Factsheet for Bra023796.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002334.1-P
Bra004222.1-P
Bra005674.1-P
Bra006580.1-P
Bra023796.1-P
Bra024159.1-P
Bra025394.1-P
Bra036215.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22880.1	Bra004222.1-P	AT1G67370.1	17937504
AT3G22880.1	Bra023796.1-P	AT3G22880.1	15014444
AT3G22880.1	Bra025394.1-P	AT3G29350.1	17937504
AT3G22880.1	Bra036215.1-P	AT3G29350.1	17937504
AT3G22880.1	Bra024159.1-P	AT4G29170.1	17937504
AT3G22880.1	Bra005674.1-P	AT5G01630.1	15014444
AT3G22880.1	Bra005674.1-P	AT5G01630.1	16415210
AT3G22880.1	Bra002334.1-P	AT5G20850.1	15014444
AT3G22880.1	Bra006580.1-P	AT5G20850.1	15014444
AT3G22880.1	Bra002334.1-P	AT5G20850.1	16415210
AT3G22880.1	Bra006580.1-P	AT5G20850.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g082790.2.1	Tomato	nucleus	88.86	88.32
AT3G22880.1	Thale cress	nucleus	91.27	88.08
CDY34225	Canola	mitochondrion	99.7	87.8
VIT_05s0020g04170.t01	Wine grape	nucleus	90.66	86.49
KRH35438	Soybean	nucleus	89.46	86.09
PGSC0003DMT400077570	Potato	nucleus	85.54	83.28
Bra001890.1-P	Field mustard	nucleus	20.48	80.95
OQU78622	Sorghum	nucleus	81.93	80.95
OQU84696	Sorghum	nucleus	81.93	79.07
Os11t0146800-01	Rice	nucleus	81.93	79.07
HORVU5Hr1G040730.2	Barley	nucleus	82.23	78.9
TraesCS5D01G141200.1	Wheat	nucleus	81.33	78.49
TraesCS5A01G133000.1	Wheat	nucleus	81.63	78.32
Os12t0143800-01	Rice	mitochondrion	81.02	78.2
TraesCS5B01G131900.1	Wheat	nucleus	80.72	77.91
GSMUA_Achr8P26880_001	Banana	nucleus	84.64	72.8
Zm00001d044629_P001	Maize	nucleus	82.83	72.56
KRG91377	Soybean	cytosol	31.33	71.72
Zm00001d050876_P001	Maize	cytosol	17.77	71.08
Zm00001d035787_P001	Maize	cytosol	29.82	60.0
Zm00001d016055_P001	Maize	plastid	45.78	55.27
Bra006580.1-P	Field mustard	cytosol	50.0	48.54
Bra002334.1-P	Field mustard	cytosol	50.0	48.54
Bra004897.1-P	Field mustard	nucleus	27.71	24.86
Bra006820.1-P	Field mustard	mitochondrion	18.37	18.43
Bra035691.1-P	Field mustard	cytosol	22.59	16.16
Bra037372.1-P	Field mustard	extracellular, nucleus, plastid	11.45	14.67

Protein Annotations

Gene3D:1.10.150.20	MapMan:13.3.6.4.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra023796	EnsemblPlants:Bra023796.1	EnsemblPlants:Bra023796.1-P
InterPro:DMC1_rcmbase	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx	GO:GO:0000003	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0051026	InterPro:IPR020587
InterPro:IPR020588	UniProt:M4E4U2	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162
PFscan:PS50163	PANTHER:PTHR22942	PANTHER:PTHR22942:SF30	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface
SUPFAM:SSF47794	SUPFAM:SSF52540	TIGRFAMs:TIGR02238	UniParc:UPI0002544166	:	:

Description

AT3G22880 (E=6e-171) ATDMC1, DMC1, ARLIM15 | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1); ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding

Coordinates

chrA01:+:19987883..19990319

Molecular Weight (calculated)

36195.8 Da

IEP (calculated)

5.944

GRAVY (calculated)

-0.118

Length

332 amino acids

Sequence
(BLAST)

001: MLSALKSEEA SMQLVEREEI DEDDELFEAI DKLIAQGINA GDVKKLQDAG IHTCNGLMMH TKKNLTGIKG LSEAKVDKIC EAAEKIVNFG YMTGSDALLK
101: RKSVVRITTG SQALDDLLGG GIETAAITEA FGEFRSGKTQ LAHTLCVTTQ LPTSMKGGNG KVAYIDTEGT FRPDRIVQIA ERFGMDPGAV LDNIIYARAY
201: TYEHQHNLLL GLAAKMSEEP FKILIVDSII ALFRVDFTGR GELADRQQKL AQMLSRIIKI AEEFNVAVYM TNQVISDPGG GMFISDPKKP AGGHVLAHAV
301: TIRLSFRKGK GEQRVCKVFD APNLPEGEAI SF

Best Arabidopsis Sequence Match ( AT3G22880.2 )
(BLAST)

001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA ISF

Arabidopsis Description

DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.