Factsheet for Bra005674.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002334.1-P
Bra004106.1-P
Bra006580.1-P
Bra023796.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01630.1	Bra023796.1-P	AT3G22880.1	15014444
AT5G01630.1	Bra023796.1-P	AT3G22880.1	16415210
AT5G01630.1	Bra002334.1-P	AT5G20850.1	15014444
AT5G01630.1	Bra006580.1-P	AT5G20850.1	15014444
AT5G01630.1	Bra002334.1-P	AT5G20850.1	16415210
AT5G01630.1	Bra006580.1-P	AT5G20850.1	16415210
AT5G01630.1	Bra004106.1-P	AT5G45010.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11187	Canola	nucleus	92.83	84.9
AT5G01630.1	Thale cress	nucleus	78.49	72.03
AT4G00020.2	Thale cress	nucleus	75.0	66.98
VIT_08s0058g00500.t01	Wine grape	cytosol	29.81	57.77
Bra037060.1-P	Field mustard	nucleus	61.32	56.13
Solyc02g050210.1.1	Tomato	cytosol	15.85	47.32
Os01t0164800-01	Rice	cytosol, mitochondrion	10.28	43.08
KRH17731	Soybean	mitochondrion	42.36	42.28
GSMUA_Achr5P28060_001	Banana	nucleus	33.49	38.63
Solyc02g050200.1.1	Tomato	nucleus	25.94	34.72
Zm00001d024953_P024	Maize	nucleus	35.85	24.63
TraesCS3A01G099300.4	Wheat	nucleus	34.34	22.99
TraesCS3D01G099600.1	Wheat	nucleus	34.72	22.6
TraesCS3B01G115500.3	Wheat	nucleus	34.62	22.57
HORVU3Hr1G017990.10	Barley	nucleus, plastid	34.53	21.89
Os01t0164900-01	Rice	cytosol, mitochondrion	7.55	16.63
TraesCS3B01G104500.1	Wheat	nucleus	6.79	8.64
TraesCS3A01G089200.3	Wheat	nucleus	6.6	7.95
TraesCS3D01G089500.2	Wheat	nucleus	6.32	7.73
HORVU3Hr1G015880.36	Barley	cytosol, mitochondrion, nucleus	6.32	7.25

Protein Annotations

MapMan:13.3.6.4.2	MapMan:14.3.2.1	Gene3D:2.40.50.140	InterPro:BRCA2	InterPro:BRCA2_OB_1	InterPro:BRCA2_hlx
InterPro:BRCA2_hlx_sf	InterPro:BRCA2_repeat	EnsemblPlantsGene:Bra005674	EnsemblPlants:Bra005674.1	EnsemblPlants:Bra005674.1-P	GO:GO:0000724
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:IPR002093	UniProt:M4CN86	InterPro:NA-bd_OB-fold	PFAM:PF00634	PFAM:PF09103
PFAM:PF09169	PFscan:PS50138	PANTHER:PTHR11289	SUPFAM:SSF50249	SUPFAM:SSF81872	SUPFAM:SSF81878
UniParc:UPI000253F9C8	SEG:seg	:	:	:	:

Description

AT4G00020 (E=3e-211) MEE43, EDA20, BRCA2(IV), BRCA2A | protein binding / single-stranded DNA binding

Coordinates

chrA03:+:81301..86974

Molecular Weight (calculated)

116715.0 Da

IEP (calculated)

9.431

GRAVY (calculated)

-0.317

Length

1060 amino acids

Sequence
(BLAST)

0001: MSTWSLFPDS SGDCFRWEGA GRILQSDSQD YAIESTAPLP SMNDLLLRDL HNIGGSSLQV DSAATLPMFR TASGRSVPLK DSSIAKAISI LGPHSDNVPL
0101: RESGFGDPNS FFQTASNKKV FVSSAGLSRA NALLGLEADD FNGFNHVKRS NSSHQKRGCS ELKTHATGVQ HHSETPGQYE CHVFEKISDN LYPSAVVPPT
0201: MFQTAGGKTL SVSVQALKRA RNLLGDPESG TLFDDVAAGD QFATPQKVQR LVDIAYEGKT SNKHTATSFV SPLRSSSKKF RSVKLEDLAS GGNLIKKFDT
0301: AVDETDCALN ITKVATHGVS NNRPLASYMA VNSAKANGFI PIAKQFGQPL VDITNRSANN KQDSTQKKRL GKTIFVSPFK RPRNSSFKTP LKKNAQHALS
0401: GLSIVSSDTL NSKMVLCTRY PQRSPRVYIK DYFRMHPIVT TKMNYVPDHV RRIKSSNADK YVFRDESSSN MVGAETFFQM LAESGASLQQ ASRKWVINHY
0501: RWIVWKLACY ETCYPVICRG NFLTITNVLE ELKYRYEREV NHGHCSAIKR ILSGDAPASS MMVLYISAIN PKTDNDSQEA LGSGSGNNVK VELSDGWYSM
0601: NAALDVKLTK QLNAGKLFVG QKLRHAYVRI SYLKILGAGL SGWATPTSPL EAVISNTICL LLNINGTYRA HWADRLGFCK EVGVPLAFNC IKGDGGPVPK
0701: TLAGITRIYP ILYKERRSAL VEGLMCEYER GVNGFHSQND TDSEEGAKVF KLLETASEPE LLMAEMSLEQ LTSFTTYKSK FEAAKHIQME KSVAKALEEA
0801: GLSERDVTPF MRIRLVGLTS LSYEGEHNPK EGIVTIWNPT ERQRIELTEG KIYIVKGLVP TISDSETLYL HARGSSSRWE PLSPKASSSF QPFFNPRKPI
0901: SLSNFGGIPL SSEFDLAAYV VYVGNVYTGV EQKKQWVFVT DGSTQRSRSG EISNSLLAIS FSTPSMDDLP TPHISHSLVG SVVGFCNLIK KAKDAKNDMW
1001: VGEATENSVY SINAEAAYSS HLKTSSSHIQ TWAKLSSSNS VTYKLRQRVL FIIGASTCSR

Best Arabidopsis Sequence Match ( AT5G01630.1 )
(BLAST)

0001: MSTWHLFSDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIERE ESMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAENVAYSD
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC

Arabidopsis Description

BRCA2BProtein BREAST CANCER SUSCEPTIBILITY 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q7Y1C4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.