Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005674.1-P | Field mustard | nucleus | 84.9 | 92.83 |
| CDX80759 | Canola | nucleus | 84.81 | 88.8 |
| CDY08306 | Canola | nucleus | 37.96 | 76.66 |
| AT5G01630.1 | Thale cress | nucleus | 74.37 | 74.63 |
| AT4G00020.2 | Thale cress | nucleus | 71.61 | 69.92 |
| CDY64035 | Canola | nucleus | 59.97 | 65.69 |
| VIT_08s0058g00500.t01 | Wine grape | cytosol | 28.39 | 60.15 |
| Solyc02g050210.1.1 | Tomato | cytosol | 15.01 | 49.01 |
| KRH17731 | Soybean | mitochondrion | 40.38 | 44.07 |
| Os01t0164800-01 | Rice | cytosol, mitochondrion | 9.49 | 43.48 |
| GSMUA_Achr5P28060_001 | Banana | nucleus | 31.67 | 39.93 |
| Solyc02g050200.1.1 | Tomato | nucleus | 25.19 | 36.87 |
| Zm00001d024953_P024 | Maize | nucleus | 34.43 | 25.86 |
| TraesCS3A01G099300.4 | Wheat | nucleus | 33.48 | 24.51 |
| TraesCS3D01G099600.1 | Wheat | nucleus | 33.82 | 24.08 |
| TraesCS3B01G115500.3 | Wheat | nucleus | 33.74 | 24.05 |
| HORVU3Hr1G017990.10 | Barley | nucleus, plastid | 33.56 | 23.27 |
| Os01t0164900-01 | Rice | cytosol, mitochondrion | 7.42 | 17.88 |
| TraesCS3B01G104500.1 | Wheat | nucleus | 6.73 | 9.36 |
| TraesCS3D01G089500.2 | Wheat | nucleus | 6.64 | 8.88 |
| TraesCS3A01G089200.3 | Wheat | nucleus | 6.64 | 8.75 |
| HORVU3Hr1G015880.36 | Barley | cytosol, mitochondrion, nucleus | 6.56 | 8.23 |
Protein Annotations
| MapMan:13.3.6.4.2 | MapMan:14.3.2.1 | Gene3D:2.40.50.140 | GO:A0A078FDW4 | UniProt:A0A078FDW4 | InterPro:BRCA2 |
| InterPro:BRCA2_OB_1 | InterPro:BRCA2_hlx | InterPro:BRCA2_hlx_sf | InterPro:BRCA2_repeat | EnsemblPlants:CDY11187 | ProteinID:CDY11187 |
| ProteinID:CDY11187.1 | ncoils:Coil | GO:GO:0000724 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00049205001 | InterPro:IPR002093 |
| InterPro:NA-bd_OB-fold | PFAM:PF00634 | PFAM:PF09103 | PFAM:PF09169 | PFscan:PS50138 | PANTHER:PTHR11289 |
| SUPFAM:SSF50249 | SUPFAM:SSF81872 | SUPFAM:SSF81878 | UniParc:UPI0004EE6F8D | SEG:seg | : |
Description
BnaA03g00230DBnaA03g00230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDW4]
Coordinates
chrLK032010:+:90272..96033
Molecular Weight (calculated)
128207.0 Da
IEP (calculated)
9.345
GRAVY (calculated)
-0.332
Length
1159 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSTWSLLPDS SGDCFRWEVA GRILQSDSED YAIESTAPLP SMNDLLLQGW SNLKQGDEAI LRTGLGNSII FSLIFCISCS FHSFGVIYLH NIGGSSLQVD
0101: SAATLPMFRT ASGRSVPLKD SSIAKALSIL GTHSDNVPLR ESGFGDPNSF FQTASNKKVF VSSAADDFNG FNHVKRSNSS HQKRGCSELK THATGVQHHS
0201: EIPGQYECHV FEKISDNLYT SAVVPPTMFQ TAGGKTLSVS VQALKRARNL LGDPESGTLF DDVAAGDQFA TPQKVQRLGD TAIKNRNANT GYNAYEGKTS
0301: NKHTATSFVS PLRSSSKQFR SAKLEDLASG GNLIKKFDAA VDETDCALNT TKVATHGVSY NRPLASNMAV NNAKANGFIP IAKQFGQPLV DITNRSANNK
0401: QDSTQKKRLG KTISVSPFKR PRNSSFKTPL KKNAQHALSG LSIVSSDTLN SKKVLSTRYP ERSPRVYIKD YFRMHPTVTT KMNYVPDHVR RIKSSNADKY
0501: VFRDESSSNM VGAETFFQIL AESGASLQQA SRKWIINHYR WIVWKLACYE TCYPLICRGN FLTITNVLEE LKYRYEREVN HGHCSAIKKI LSGDAPASSM
0601: MVLYISAIYP KTDNDSQEAL GSGSGSNVKV ELSDGWYSMN AALDVSLTKQ LNAGKLFVGQ KLRILGAGLS GWATPTSPLE AVISNTICLL LNINGTYRAH
0701: WADRLGFCKE VGVPLAFNCI KGNGGPVPKT LAGITRIYPI LYKERLGERK SIIRSERMES RMTELHNQRQ VLYIQNFRFE VAFFKDIQTI FVYNRKSSEL
0801: LNTDRLTYYS NQLALRSALV EGLMCEYERG VNGVHSQNDT DSEEGAKVFK LLETASEPEL LMAEMSLEQL TSFTTYKSKF EAAKQIQMEK SVAKALEEAG
0901: LSERDVTPFM RIRLVGLTSL SYEGEHNPKE GIVTIWNPTE RQRTELTEGK IYIVKALVPT ISDSETLYLH ARGSSSRWEP LSPKASSSFQ PFFNPRKPIS
1001: LSNFGGIPLS SEFDIAAYVV YVGNVYTDVE QKKQWVFVTD GSTQRSRSGE ISNSLLAISF STPSMDDLPT PHISHSLVGS VVGFCNLIKR AKDAKNDMWV
1101: GEATENSVYS INAEAAYSSH LKTSSSHIQT WAKLSSSNSV TYKLRQRVLF IIGASTCSR
0101: SAATLPMFRT ASGRSVPLKD SSIAKALSIL GTHSDNVPLR ESGFGDPNSF FQTASNKKVF VSSAADDFNG FNHVKRSNSS HQKRGCSELK THATGVQHHS
0201: EIPGQYECHV FEKISDNLYT SAVVPPTMFQ TAGGKTLSVS VQALKRARNL LGDPESGTLF DDVAAGDQFA TPQKVQRLGD TAIKNRNANT GYNAYEGKTS
0301: NKHTATSFVS PLRSSSKQFR SAKLEDLASG GNLIKKFDAA VDETDCALNT TKVATHGVSY NRPLASNMAV NNAKANGFIP IAKQFGQPLV DITNRSANNK
0401: QDSTQKKRLG KTISVSPFKR PRNSSFKTPL KKNAQHALSG LSIVSSDTLN SKKVLSTRYP ERSPRVYIKD YFRMHPTVTT KMNYVPDHVR RIKSSNADKY
0501: VFRDESSSNM VGAETFFQIL AESGASLQQA SRKWIINHYR WIVWKLACYE TCYPLICRGN FLTITNVLEE LKYRYEREVN HGHCSAIKKI LSGDAPASSM
0601: MVLYISAIYP KTDNDSQEAL GSGSGSNVKV ELSDGWYSMN AALDVSLTKQ LNAGKLFVGQ KLRILGAGLS GWATPTSPLE AVISNTICLL LNINGTYRAH
0701: WADRLGFCKE VGVPLAFNCI KGNGGPVPKT LAGITRIYPI LYKERLGERK SIIRSERMES RMTELHNQRQ VLYIQNFRFE VAFFKDIQTI FVYNRKSSEL
0801: LNTDRLTYYS NQLALRSALV EGLMCEYERG VNGVHSQNDT DSEEGAKVFK LLETASEPEL LMAEMSLEQL TSFTTYKSKF EAAKQIQMEK SVAKALEEAG
0901: LSERDVTPFM RIRLVGLTSL SYEGEHNPKE GIVTIWNPTE RQRTELTEGK IYIVKALVPT ISDSETLYLH ARGSSSRWEP LSPKASSSFQ PFFNPRKPIS
1001: LSNFGGIPLS SEFDIAAYVV YVGNVYTDVE QKKQWVFVTD GSTQRSRSGE ISNSLLAISF STPSMDDLPT PHISHSLVGS VVGFCNLIKR AKDAKNDMWV
1101: GEATENSVYS INAEAAYSSH LKTSSSHIQT WAKLSSSNSV TYKLRQRVLF IIGASTCSR
0001: MSTWHLFSDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIERE ESMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAENVAYSD
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
Arabidopsis Description
BRCA2BProtein BREAST CANCER SUSCEPTIBILITY 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q7Y1C4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.