Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G115500.3 | Wheat | nucleus | 97.73 | 97.85 |
| TraesCS3A01G099300.4 | Wheat | nucleus | 94.35 | 97.03 |
| HORVU3Hr1G017990.10 | Barley | nucleus, plastid | 90.85 | 88.46 |
| TraesCS3D01G089500.2 | Wheat | nucleus | 43.43 | 81.55 |
| Os01t0164800-01 | Rice | cytosol, mitochondrion | 11.12 | 71.54 |
| Zm00001d024953_P024 | Maize | nucleus | 59.15 | 62.41 |
| VIT_08s0058g00500.t01 | Wine grape | cytosol | 18.8 | 55.94 |
| GSMUA_Achr5P28060_001 | Banana | nucleus | 25.98 | 46.03 |
| CDY08306 | Canola | nucleus | 16.22 | 45.99 |
| Solyc02g050210.1.1 | Tomato | cytosol | 9.64 | 44.23 |
| KRH17731 | Soybean | mitochondrion | 25.06 | 38.42 |
| CDY64035 | Canola | nucleus | 22.97 | 35.35 |
| AT5G01630.1 | Thale cress | nucleus | 25.0 | 35.24 |
| CDX80759 | Canola | nucleus | 23.71 | 34.87 |
| Bra005674.1-P | Field mustard | nucleus | 22.6 | 34.72 |
| CDY11187 | Canola | nucleus | 24.08 | 33.82 |
| AT4G00020.2 | Thale cress | nucleus | 24.14 | 33.11 |
| Solyc02g050200.1.1 | Tomato | nucleus | 16.03 | 32.95 |
| Bra037060.1-P | Field mustard | nucleus | 22.91 | 32.21 |
| Os01t0164900-01 | Rice | cytosol, mitochondrion | 7.25 | 24.53 |
Protein Annotations
| MapMan:13.3.6.4.2 | MapMan:14.3.2.1 | Gene3D:2.40.50.140 | InterPro:BRCA2_OB_1 | InterPro:BRCA2_hlx | InterPro:BRCA2_hlx_sf |
| InterPro:BRCA2_repeat | GO:GO:0000724 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR002093 | InterPro:NA-bd_OB-fold | PFAM:PF00634 | PFAM:PF09103 |
| PFAM:PF09169 | PFscan:PS50138 | SMART:SM01341 | SUPFAM:SSF50249 | SUPFAM:SSF81872 | SUPFAM:SSF81878 |
| InterPro:Tower_dom | EnsemblPlantsGene:TraesCS3D01G099600 | EnsemblPlants:TraesCS3D01G099600.1 | TIGR:cd04493 | SEG:seg | : |
Description
No Description!
Coordinates
chr3D:+:51108752..51120020
Molecular Weight (calculated)
177628.0 Da
IEP (calculated)
8.565
GRAVY (calculated)
-0.445
Length
1628 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPGRWRVWGQ PDGRLVWVPA PEPDAPPSPA AASPLPPPLP PGCGAGIAAA SSEDALAKGR GAADGCRVES MADLLVQARN TLLEGDGMSG ATVDAGQGQL
0101: FCTGSGRSVS VSERAIRRAR ALVGEEVEKA GNKRKQPFDD VPGAEGELRE MDAPFRGGVH NTAVPPVFQT GSGKAVLLGK DSIQKARAIL GEQPFDHVPD
0201: AERESSEMDA PFRGGVYNTT MPPVFQTGSG KAVLLGKDSI QKARVLLEDV DSAAGAVQPM FRTGMGRPVP VSRTSIDKAR AVLEGQTVAE KGVNGMEQFP
0301: LFQTGSGRVV SVSAASVQKA KSVLKDNNTS EENTESFGRP NQPMMFQTGS GRPAMISERS IERSRAVANE GDAEKSGHWD TDCQFPMFQT GLGKPVAVSW
0401: SSVQKAKAVL EEEKIKTTGR GESSDCATTL QTETPTSVLM SSSLIMNSRS VTPKEDSAMQ VTRTEKNHKD DDHVPLFQTG LGRSIAISKS SLKRASAVLE
0501: PRNIAKELED EAHLDGAHDT PVFRTGLGRS IIASENSRKE LPILEAEEAV KSVNNYNGET FVEEATFQAG IQKFVPQNRI SSHKASMLLE QRNFMEKGYK
0601: DSGSQLPMFR TGSGKSVLIS ENSVQKARAV LEEQGINKDN HKLLNMDKKI PVFASPLKTS CARTVNISSV GVSRAATLLG LEENTLSTQF FGHVGDKLGT
0701: KINFEQENPE QRLGLASYPT ENQVHKEQHR PFELSNNTVS DSGEHSIRFS TAGGRSMAIS SDALERAKSL LGESDLMVST NNLSYPLGSA CNDKMQNSTV
0801: APKEGGSDLS KRRRVSGRTE LATFSHQAMS DRKDTGSFGN AVSDIHPTSE NTNRFHVGSR STSEIPKIVK PSSRCLSETD NTNDTKDKTR QLHMPAGALV
0901: DISNFMGSYS GNIDHVVNEK RRIGGRNSAS SFKRPRSSRF ITPISTNRQS SAGVPKLPPT QITSCRTKLS AYYPFQHKRK TWKEYFGGPP CFNCLAEHII
1001: DEVKLMDAKG AERYKFHNMN TGAEEFHKLL IACGASLTYA TKEWVNNHYK WIIWKLASLE RCYPTKAAGK FLTVANVLDE LKYRYDREVN NGHRSAIKKI
1101: LEGNALPSLM MVLCISAIYS HPDVHKLEAV GTDENENSIK NKSLLAAKRN MPAHIELTDG WYALEASLDV ALSEQLQKRK LFIGQKLRIW GASLCGWTGP
1201: VSFHEASGTV KLMVHVNGSY RARWDDPLGF CKHVGPPLAF KCIKASGGRV PRTLVGVARI YPVLYKERLP DGSSIVRSER MERKALQLYH QRVSKIAEDI
1301: MSEQDENCAS TDDSEEGAKI CKMLEQAAEP EVMMAGLTSE QMISFSSYQA KQKEARQNEV AKKVENALEV AGLSSRDVTP FLKVRVTGLA HKISATKTIN
1401: KEGLITIWNP TEKQKADLVE GQVYIATGLL PSAHCTNILY LHARGSSTMW KPLASAQAAD FQPFFTPRKA VELSLIGEVP LASEFDIAGV VLHVGDVYLC
1501: SNQKRQWLFL TDGSKFISAS QSTDQDDCLL AVSFSCSSAS DDGAFFSYAL SGNTVGFSNL VKRQKDQTRR IWVAEATQSS TYTLSHEISK KSHLKEAATC
1601: AEKWASSSFD KIQQLKERVL CIIGDSGG
0101: FCTGSGRSVS VSERAIRRAR ALVGEEVEKA GNKRKQPFDD VPGAEGELRE MDAPFRGGVH NTAVPPVFQT GSGKAVLLGK DSIQKARAIL GEQPFDHVPD
0201: AERESSEMDA PFRGGVYNTT MPPVFQTGSG KAVLLGKDSI QKARVLLEDV DSAAGAVQPM FRTGMGRPVP VSRTSIDKAR AVLEGQTVAE KGVNGMEQFP
0301: LFQTGSGRVV SVSAASVQKA KSVLKDNNTS EENTESFGRP NQPMMFQTGS GRPAMISERS IERSRAVANE GDAEKSGHWD TDCQFPMFQT GLGKPVAVSW
0401: SSVQKAKAVL EEEKIKTTGR GESSDCATTL QTETPTSVLM SSSLIMNSRS VTPKEDSAMQ VTRTEKNHKD DDHVPLFQTG LGRSIAISKS SLKRASAVLE
0501: PRNIAKELED EAHLDGAHDT PVFRTGLGRS IIASENSRKE LPILEAEEAV KSVNNYNGET FVEEATFQAG IQKFVPQNRI SSHKASMLLE QRNFMEKGYK
0601: DSGSQLPMFR TGSGKSVLIS ENSVQKARAV LEEQGINKDN HKLLNMDKKI PVFASPLKTS CARTVNISSV GVSRAATLLG LEENTLSTQF FGHVGDKLGT
0701: KINFEQENPE QRLGLASYPT ENQVHKEQHR PFELSNNTVS DSGEHSIRFS TAGGRSMAIS SDALERAKSL LGESDLMVST NNLSYPLGSA CNDKMQNSTV
0801: APKEGGSDLS KRRRVSGRTE LATFSHQAMS DRKDTGSFGN AVSDIHPTSE NTNRFHVGSR STSEIPKIVK PSSRCLSETD NTNDTKDKTR QLHMPAGALV
0901: DISNFMGSYS GNIDHVVNEK RRIGGRNSAS SFKRPRSSRF ITPISTNRQS SAGVPKLPPT QITSCRTKLS AYYPFQHKRK TWKEYFGGPP CFNCLAEHII
1001: DEVKLMDAKG AERYKFHNMN TGAEEFHKLL IACGASLTYA TKEWVNNHYK WIIWKLASLE RCYPTKAAGK FLTVANVLDE LKYRYDREVN NGHRSAIKKI
1101: LEGNALPSLM MVLCISAIYS HPDVHKLEAV GTDENENSIK NKSLLAAKRN MPAHIELTDG WYALEASLDV ALSEQLQKRK LFIGQKLRIW GASLCGWTGP
1201: VSFHEASGTV KLMVHVNGSY RARWDDPLGF CKHVGPPLAF KCIKASGGRV PRTLVGVARI YPVLYKERLP DGSSIVRSER MERKALQLYH QRVSKIAEDI
1301: MSEQDENCAS TDDSEEGAKI CKMLEQAAEP EVMMAGLTSE QMISFSSYQA KQKEARQNEV AKKVENALEV AGLSSRDVTP FLKVRVTGLA HKISATKTIN
1401: KEGLITIWNP TEKQKADLVE GQVYIATGLL PSAHCTNILY LHARGSSTMW KPLASAQAAD FQPFFTPRKA VELSLIGEVP LASEFDIAGV VLHVGDVYLC
1501: SNQKRQWLFL TDGSKFISAS QSTDQDDCLL AVSFSCSSAS DDGAFFSYAL SGNTVGFSNL VKRQKDQTRR IWVAEATQSS TYTLSHEISK KSHLKEAATC
1601: AEKWASSSFD KIQQLKERVL CIIGDSGG
0001: MSTWHLFSDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIERE ESMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAENVAYSD
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
Arabidopsis Description
BRCA2BProtein BREAST CANCER SUSCEPTIBILITY 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q7Y1C4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.