Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08306 | Canola | nucleus | 50.85 | 93.73 |
| Bra037060.1-P | Field mustard | nucleus | 90.83 | 82.99 |
| CDX80759 | Canola | nucleus | 63.52 | 60.7 |
| CDY11187 | Canola | nucleus | 65.69 | 59.97 |
| VIT_08s0058g00500.t01 | Wine grape | cytosol | 29.68 | 57.4 |
| Solyc02g050210.1.1 | Tomato | cytosol | 15.6 | 46.48 |
| KRH17731 | Soybean | mitochondrion | 44.14 | 43.97 |
| Os01t0164800-01 | Rice | cytosol, mitochondrion | 9.45 | 39.53 |
| GSMUA_Achr5P28060_001 | Banana | nucleus | 33.93 | 39.06 |
| Solyc02g050200.1.1 | Tomato | nucleus | 28.64 | 38.26 |
| Zm00001d024953_P024 | Maize | nucleus | 37.05 | 25.41 |
| TraesCS3A01G099300.4 | Wheat | nucleus | 35.07 | 23.44 |
| TraesCS3B01G115500.3 | Wheat | nucleus | 35.44 | 23.06 |
| TraesCS3D01G099600.1 | Wheat | nucleus | 35.35 | 22.97 |
| HORVU3Hr1G017990.10 | Barley | nucleus, plastid | 35.35 | 22.37 |
| Os01t0164900-01 | Rice | cytosol, mitochondrion | 8.98 | 19.75 |
| TraesCS3B01G104500.1 | Wheat | nucleus | 7.28 | 9.24 |
| TraesCS3D01G089500.2 | Wheat | nucleus | 7.09 | 8.65 |
| TraesCS3A01G089200.3 | Wheat | nucleus | 6.99 | 8.41 |
| HORVU3Hr1G015880.36 | Barley | cytosol, mitochondrion, nucleus | 7.18 | 8.23 |
Protein Annotations
| MapMan:13.3.6.4.2 | MapMan:14.3.2.1 | Gene3D:2.40.50.140 | GO:A0A078JD11 | UniProt:A0A078JD11 | InterPro:BRCA2 |
| InterPro:BRCA2_OB_1 | InterPro:BRCA2_hlx | InterPro:BRCA2_hlx_sf | InterPro:BRCA2_repeat | EnsemblPlants:CDY64035 | ProteinID:CDY64035 |
| ProteinID:CDY64035.1 | GO:GO:0000724 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00040821001 | InterPro:IPR002093 | InterPro:NA-bd_OB-fold |
| PFAM:PF00634 | PFAM:PF09103 | PFAM:PF09169 | PFscan:PS50138 | PANTHER:PTHR11289 | SUPFAM:SSF50249 |
| SUPFAM:SSF81872 | SUPFAM:SSF81878 | UniParc:UPI0004EF49F6 | SEG:seg | : | : |
Description
BnaC06g42060DBnaC06g42060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JD11]
Coordinates
chrLK034390:-:15448..21001
Molecular Weight (calculated)
117229.0 Da
IEP (calculated)
8.707
GRAVY (calculated)
-0.385
Length
1058 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSTWQLLPDS SGDGFRWDAA GRILQSGKSD SPPTAAPPRP SMADLLLRGC SKLIEPEESK PTMFTTALGK SVALKESSIS RAKSILTDSD DIARFGVPNS
0101: CFQTASNKKV NVSSAGMARA KALLGLEEDD DFSGFKHVNH RLPSSHQQHG LTTPETFGAQ NRSVTPGGHY VPGKRSEILS SSPKVPQTKF QTAGGRSLSV
0201: SVEALNRARS LLGDPELGPF FDDVHHFVTP QKDKWIGGDI AHESNKHTSN SFISPLQSSS KQFRSVKLED VASGVNLINK FDAAVDETHG NRPLASDKAV
0301: NNTMGTGFIP RSTQFGRQAH QPLVDITNRN HIAHANNRQE SSQKKRLGKT VSVPPFKRPR TSSFKSPLMK NDQHPSNGFS VVSCDTQYSK RVFSTRTEER
0401: SPRIYIKDYF GMRPRATTKM AVPEHVRRIK SSNAEKYVFG DVSSSSVVGA ETFHQMLAES GASLQCASRE WVTNHYRWIV WKLACYETYY PAKCRGNFLT
0501: ITNVLQELRY RYEREVNHGH CSAIKRILSG DAPASSMMVL CISAINPKAR ETHGSDSGSN VKIELTDGWY SINAALDVML QKQLNAGKLF IGQKLRILGA
0601: GLSGWTTPTS PLEAVISNTI YLLLNINGTY RAHWADRLGF CKEVGVPLAL NCIKCNGGPV PKTLAGITRI YPILYKEKLG EKKSVVRSER MEWRMIELHN
0701: QRQVSIISCT EELLVTFMRS DLIEGLICEN QGGINGVDSQ NDTDSKEGAK LFKLLESAAE PDFLMADMSM EELNCFNRYK EKFEAAMEKK MEKSVAKALE
0801: DAGLGERDVT PFMRIRLVGL TSLSYDGHPN PKEAILTIWN PTETQRTELT EGKIYAMKGL VPMNIDSETL YLHARGSSSR LQPLSPKASE RFQPFFNPRK
0901: SMSLLDLGEI LLGSEFDMAA YVVYVGNAYT DVDQKKQWVF VTDGSLQYSD SGKIANSLLA ISFRTSSMDD LHSPLISHNL VGSVVGFCNL IKRANDVEND
1001: MWVCEAMENS DYFLNADPAC PSHLKTSSGH IQIWANLSFS KSIIDQLRQR ALFIVGAC
0101: CFQTASNKKV NVSSAGMARA KALLGLEEDD DFSGFKHVNH RLPSSHQQHG LTTPETFGAQ NRSVTPGGHY VPGKRSEILS SSPKVPQTKF QTAGGRSLSV
0201: SVEALNRARS LLGDPELGPF FDDVHHFVTP QKDKWIGGDI AHESNKHTSN SFISPLQSSS KQFRSVKLED VASGVNLINK FDAAVDETHG NRPLASDKAV
0301: NNTMGTGFIP RSTQFGRQAH QPLVDITNRN HIAHANNRQE SSQKKRLGKT VSVPPFKRPR TSSFKSPLMK NDQHPSNGFS VVSCDTQYSK RVFSTRTEER
0401: SPRIYIKDYF GMRPRATTKM AVPEHVRRIK SSNAEKYVFG DVSSSSVVGA ETFHQMLAES GASLQCASRE WVTNHYRWIV WKLACYETYY PAKCRGNFLT
0501: ITNVLQELRY RYEREVNHGH CSAIKRILSG DAPASSMMVL CISAINPKAR ETHGSDSGSN VKIELTDGWY SINAALDVML QKQLNAGKLF IGQKLRILGA
0601: GLSGWTTPTS PLEAVISNTI YLLLNINGTY RAHWADRLGF CKEVGVPLAL NCIKCNGGPV PKTLAGITRI YPILYKEKLG EKKSVVRSER MEWRMIELHN
0701: QRQVSIISCT EELLVTFMRS DLIEGLICEN QGGINGVDSQ NDTDSKEGAK LFKLLESAAE PDFLMADMSM EELNCFNRYK EKFEAAMEKK MEKSVAKALE
0801: DAGLGERDVT PFMRIRLVGL TSLSYDGHPN PKEAILTIWN PTETQRTELT EGKIYAMKGL VPMNIDSETL YLHARGSSSR LQPLSPKASE RFQPFFNPRK
0901: SMSLLDLGEI LLGSEFDMAA YVVYVGNAYT DVDQKKQWVF VTDGSLQYSD SGKIANSLLA ISFRTSSMDD LHSPLISHNL VGSVVGFCNL IKRANDVEND
1001: MWVCEAMENS DYFLNADPAC PSHLKTSSGH IQIWANLSFS KSIIDQLRQR ALFIVGAC
0001: MSTWHLFSDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIERE ESMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAENVAYSD
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
Arabidopsis Description
BRCA2BProtein BREAST CANCER SUSCEPTIBILITY 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q7Y1C4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.