Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G099600.1 | Wheat | nucleus | 97.85 | 97.73 |
| TraesCS3A01G099300.4 | Wheat | nucleus | 94.9 | 97.47 |
| HORVU3Hr1G017990.10 | Barley | nucleus, plastid | 91.14 | 88.64 |
| TraesCS3B01G104500.1 | Wheat | nucleus | 41.7 | 81.39 |
| Os01t0164800-01 | Rice | cytosol, mitochondrion | 11.01 | 70.75 |
| Zm00001d024953_P024 | Maize | nucleus | 59.35 | 62.54 |
| VIT_08s0058g00500.t01 | Wine grape | cytosol | 18.82 | 55.94 |
| GSMUA_Achr5P28060_001 | Banana | nucleus | 26.08 | 46.14 |
| CDY08306 | Canola | nucleus | 16.24 | 45.99 |
| Solyc02g050210.1.1 | Tomato | cytosol | 9.53 | 43.66 |
| KRH17731 | Soybean | mitochondrion | 24.97 | 38.23 |
| CDY64035 | Canola | nucleus | 23.06 | 35.44 |
| AT5G01630.1 | Thale cress | nucleus | 25.09 | 35.32 |
| CDX80759 | Canola | nucleus | 23.68 | 34.78 |
| Bra005674.1-P | Field mustard | nucleus | 22.57 | 34.62 |
| CDY11187 | Canola | nucleus | 24.05 | 33.74 |
| AT4G00020.2 | Thale cress | nucleus | 24.23 | 33.19 |
| Solyc02g050200.1.1 | Tomato | nucleus | 16.11 | 33.08 |
| Bra037060.1-P | Field mustard | nucleus | 22.94 | 32.21 |
| Os01t0164900-01 | Rice | cytosol, mitochondrion | 7.07 | 23.91 |
Protein Annotations
| MapMan:13.3.6.4.2 | MapMan:14.3.2.1 | Gene3D:2.40.50.140 | InterPro:BRCA2_OB_1 | InterPro:BRCA2_hlx | InterPro:BRCA2_hlx_sf |
| InterPro:BRCA2_repeat | GO:GO:0000724 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR002093 | InterPro:NA-bd_OB-fold | PFAM:PF00634 | PFAM:PF09103 |
| PFAM:PF09169 | PFscan:PS50138 | SMART:SM01341 | SUPFAM:SSF50249 | SUPFAM:SSF81872 | SUPFAM:SSF81878 |
| InterPro:Tower_dom | EnsemblPlantsGene:TraesCS3B01G115500 | EnsemblPlants:TraesCS3B01G115500.3 | TIGR:cd04493 | SEG:seg | : |
Description
No Description!
Coordinates
chr3B:+:82060459..82071589
Molecular Weight (calculated)
177090.0 Da
IEP (calculated)
8.483
GRAVY (calculated)
-0.439
Length
1626 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPGRWRVWGQ PDGRLVWIPA PEPDAPPPPA AAPPPLPPGR GAGLAAASSE DALAKGRGAA DGCRVESMAD LFVQARNTLL EGDGMSGATV DAGEGQLFCT
0101: GSGRSVSVSE RAIRRARALV GEGVEKAGNK RKQPFDDVPG AEGESREMDA PFRGGVHNTT VPPVFQTGSG KAVLLGKDSI QKARAILGEQ PFDHVPDAEG
0201: ELSEMDAPFR GGVYNTTMPP VFQTGSGKAV LLGKDSIQKA RVLLEDVDSA AGAVQPMFRT GMGRPVPVSR TSIDKARAVL EGQTVAEKGV DGMEQFPLFQ
0301: TGSGRVVSVS AASVQKAKSV LKDNNTSEEN TESFGRPNQP MMFQTGLGRP AMISERSIER SRAVANEGDA EKSGHWDTDC QFPMFQTGLG KPVAVSWSSV
0401: QKAKSVLEEE KNKTTGRGES SDCATTLQTE TPTSVLMSSS LIMNSRSVTP KEDSAMQVTR TEKNHKDDDH VPLFQTGLGR SIAISKSSLK RASAVLEPRN
0501: IAKELEDEAH LDGAHDTPVF RTGLGRSILA SENSRKELPI LEAEEAVKSV NNYNGETFVE EATFQAGIQK FVPQNRISSH KASMLLEQRN FMEKGYQDSG
0601: SQLPMFRTGS GKSVLISESS VQKARAVLEE QGINKDNHKL LNMDKKIPVF ASPLKTSCAR TVNISSVGVS RAATLLGLEG NTLSTQFFGH VGDKLGTKIN
0701: FEQENPEQRL GLASYPTENQ VHKEPHRPFE LSNNTVSDSG EHSIRFSTAG GRSMAISSDA LERAKSLLGE SDLVVSTNNL VSYPLGSACN DKMQNSTVAP
0801: KEGGSDLSKR RRVSGRTELA TFSHQAMSDR KDTGSLGNAV SDIHPTSENT NRFHVGSRST SEIPKIVKPS SRCLSETDNT NDTKDKTRQL HMPAGALVDI
0901: SNFMGSYSGN IDHVVNEKRR IGGRNSASSF KRPRSSRFIT PISTNRQSSA GVPKLPPTQI TSCRTKLSAY YPFQHKRKTW KEYFGGPPCF NCLAEHIIDE
1001: VKLMDAKGAE KYKFHNMNTG AEEFQKLLIA CGASLTYATK EWVNNHYKWI VWKLASLERC YPTKAAGKFL TVANVLDELK YRYDREVNNG HRSAIKKILE
1101: GNALPSLMMV LCISAIYSHP DVNKLEAVGT DGNENSIENK SLLAAKRNMP AHIELTDGWY ALEASLDVAL SEQLQKRKLF IGQKLRIWGA SLCGWTGPVS
1201: FHEASGTVKL MVHVNGSYRA RWDDPLGFCK HVGPPLAFKC IKASGGRVPR TLVGVARIYP VLYKERLPDG SSIVRSERME RKALQLYHQR VSKIAEDIMS
1301: EQDENCASTD DSEEGAKICK MLEQAAEPEV MMAGLTSEQM ISFSSYQAKQ KEARQNEVAK KVESALEVAG LSSRDVTPFL KVRVTSLAHK ISATNTIKKE
1401: GLITIWNPTE KQKADLVEGQ VYIATGLLPS AHCTNILYLH ARGSSTMWKP LASAQAADFQ PFFTPRKAVE LSLIGEVPLA SEFDIAGVVL HVGDVYLCSN
1501: QKRQWLFLTD GSKFISASQS TEQDDCLLAV SFSCSSASDD GAFFSYALSG NTVGFSNLVK RQKDQTRRIW VAEATQSSTY TLSHEISKKS HLKEAAACAE
1601: KWASSSFDKI QQLKERVLCI IGDSGG
0101: GSGRSVSVSE RAIRRARALV GEGVEKAGNK RKQPFDDVPG AEGESREMDA PFRGGVHNTT VPPVFQTGSG KAVLLGKDSI QKARAILGEQ PFDHVPDAEG
0201: ELSEMDAPFR GGVYNTTMPP VFQTGSGKAV LLGKDSIQKA RVLLEDVDSA AGAVQPMFRT GMGRPVPVSR TSIDKARAVL EGQTVAEKGV DGMEQFPLFQ
0301: TGSGRVVSVS AASVQKAKSV LKDNNTSEEN TESFGRPNQP MMFQTGLGRP AMISERSIER SRAVANEGDA EKSGHWDTDC QFPMFQTGLG KPVAVSWSSV
0401: QKAKSVLEEE KNKTTGRGES SDCATTLQTE TPTSVLMSSS LIMNSRSVTP KEDSAMQVTR TEKNHKDDDH VPLFQTGLGR SIAISKSSLK RASAVLEPRN
0501: IAKELEDEAH LDGAHDTPVF RTGLGRSILA SENSRKELPI LEAEEAVKSV NNYNGETFVE EATFQAGIQK FVPQNRISSH KASMLLEQRN FMEKGYQDSG
0601: SQLPMFRTGS GKSVLISESS VQKARAVLEE QGINKDNHKL LNMDKKIPVF ASPLKTSCAR TVNISSVGVS RAATLLGLEG NTLSTQFFGH VGDKLGTKIN
0701: FEQENPEQRL GLASYPTENQ VHKEPHRPFE LSNNTVSDSG EHSIRFSTAG GRSMAISSDA LERAKSLLGE SDLVVSTNNL VSYPLGSACN DKMQNSTVAP
0801: KEGGSDLSKR RRVSGRTELA TFSHQAMSDR KDTGSLGNAV SDIHPTSENT NRFHVGSRST SEIPKIVKPS SRCLSETDNT NDTKDKTRQL HMPAGALVDI
0901: SNFMGSYSGN IDHVVNEKRR IGGRNSASSF KRPRSSRFIT PISTNRQSSA GVPKLPPTQI TSCRTKLSAY YPFQHKRKTW KEYFGGPPCF NCLAEHIIDE
1001: VKLMDAKGAE KYKFHNMNTG AEEFQKLLIA CGASLTYATK EWVNNHYKWI VWKLASLERC YPTKAAGKFL TVANVLDELK YRYDREVNNG HRSAIKKILE
1101: GNALPSLMMV LCISAIYSHP DVNKLEAVGT DGNENSIENK SLLAAKRNMP AHIELTDGWY ALEASLDVAL SEQLQKRKLF IGQKLRIWGA SLCGWTGPVS
1201: FHEASGTVKL MVHVNGSYRA RWDDPLGFCK HVGPPLAFKC IKASGGRVPR TLVGVARIYP VLYKERLPDG SSIVRSERME RKALQLYHQR VSKIAEDIMS
1301: EQDENCASTD DSEEGAKICK MLEQAAEPEV MMAGLTSEQM ISFSSYQAKQ KEARQNEVAK KVESALEVAG LSSRDVTPFL KVRVTSLAHK ISATNTIKKE
1401: GLITIWNPTE KQKADLVEGQ VYIATGLLPS AHCTNILYLH ARGSSTMWKP LASAQAADFQ PFFTPRKAVE LSLIGEVPLA SEFDIAGVVL HVGDVYLCSN
1501: QKRQWLFLTD GSKFISASQS TEQDDCLLAV SFSCSSASDD GAFFSYALSG NTVGFSNLVK RQKDQTRRIW VAEATQSSTY TLSHEISKKS HLKEAAACAE
1601: KWASSSFDKI QQLKERVLCI IGDSGG
0001: MSTWHLFSDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIERE ESMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAENVAYSD
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
Arabidopsis Description
BRCA2BProtein BREAST CANCER SUSCEPTIBILITY 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q7Y1C4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.