Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G040730.2 | |
| HORVU7Hr1G091450.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G115500.3 | Wheat | nucleus | 88.64 | 91.14 |
| TraesCS3D01G099600.1 | Wheat | nucleus | 88.46 | 90.85 |
| TraesCS3A01G099300.4 | Wheat | nucleus | 85.71 | 90.52 |
| HORVU3Hr1G015880.36 | Barley | cytosol, mitochondrion, nucleus | 41.69 | 75.43 |
| Os01t0164800-01 | Rice | cytosol, mitochondrion | 10.77 | 71.15 |
| Zm00001d024953_P024 | Maize | nucleus | 57.18 | 61.96 |
| VIT_08s0058g00500.t01 | Wine grape | cytosol | 18.0 | 55.03 |
| GSMUA_Achr5P28060_001 | Banana | nucleus | 25.54 | 46.46 |
| CDY08306 | Canola | nucleus | 15.91 | 46.34 |
| Solyc02g050210.1.1 | Tomato | cytosol | 9.33 | 43.94 |
| KRH17731 | Soybean | mitochondrion | 24.16 | 38.04 |
| AT5G01630.1 | Thale cress | nucleus | 24.52 | 35.5 |
| CDY64035 | Canola | nucleus | 22.37 | 35.35 |
| CDX80759 | Canola | nucleus | 22.91 | 34.6 |
| Bra005674.1-P | Field mustard | nucleus | 21.89 | 34.53 |
| CDY11187 | Canola | nucleus | 23.27 | 33.56 |
| AT4G00020.2 | Thale cress | nucleus | 23.68 | 33.36 |
| Solyc02g050200.1.1 | Tomato | nucleus | 15.73 | 33.21 |
| Bra037060.1-P | Field mustard | nucleus | 22.25 | 32.12 |
| Os01t0164900-01 | Rice | cytosol, mitochondrion | 7.06 | 24.53 |
Protein Annotations
| MapMan:13.3.6.4.2 | MapMan:14.3.2.1 | Gene3D:2.40.50.140 | UniProt:A0A287KAI0 | InterPro:BRCA2_OB_1 | InterPro:BRCA2_hlx |
| InterPro:BRCA2_hlx_sf | InterPro:BRCA2_repeat | GO:GO:0000724 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:HORVU3Hr1G017990 | EnsemblPlants:HORVU3Hr1G017990.10 |
| InterPro:IPR002093 | InterPro:NA-bd_OB-fold | PFAM:PF00634 | PFAM:PF09103 | PFAM:PF09169 | PFscan:PS50138 |
| SMART:SM01341 | SUPFAM:SSF50249 | SUPFAM:SSF81872 | SUPFAM:SSF81878 | InterPro:Tower_dom | UniParc:UPI000B467F35 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:46529324..46546244
Molecular Weight (calculated)
182203.0 Da
IEP (calculated)
8.682
GRAVY (calculated)
-0.460
Length
1672 amino acids
Sequence
(BLAST)
(BLAST)
0001: PFRTTLSLAS SDFEKRFVPN LFSLGSVAPA AASERFPPGL RESSPVAMPG RWRVWGQPDG SLVWIPAPEL GAPLPPAAAP PPPPPLPPGR GAGIADASSE
0101: DALSKGRGAA DGCRVESMAD LLVQARNTLL EGDRMSGATV DAGEGQLFCT GSGRSVSVSE RAIRRARALV GEDVEKAGTK RKQPFDDVPG AEGELRETDA
0201: LFRGGVHNTT MPPVFQTGSG KTVLLGKDSI QKARAILGEQ PFDDVPDAEG ESSEMDAPFR GGAYNATRPP VFQTGSGKAV LLGKDSIQKA RVLLEDVDRA
0301: AGVVEPMFRT GMGRPVPVSR TSIDKARAAL EGQTVAEKGV DGMEQFPLFQ TGSGRVVSVS AASVQKAKSV LKDNSTSEEN TESFGRSNQA MMFPTGSGRP
0401: AMISERSIER SRVVGNKGDA KKSGHWDADC QFPMFQTGLG KPVAVSWSSV QKARAVLEEE KIKTTGRGDS SDCATTLQTE TPTSVMSSSL IMNDRSVTPK
0501: EDSAMQVTRI EKNHKDDDHV PLFQTGLGRS IAISKSSLKR ASAVLEPRNI AKELEDEVHL DGAHDTPVSR TGLGRSILAS ENSRKELPIL EAEEAVRSVN
0601: NYNGETFVEE ATFQAGIQKF VPQNRSSSHK ASMLLEQRNF MEKGYEDCGS QLPMFRTGSG KSVLISENSV QKARAVLEEQ GKISRDNPKL LNMDKKIPVF
0701: ASPLKTSCAR TVNISSVGVS RAATLLGLEE NTLSTQFFGH VGDKLGRKIN FERENPEQRP GLAPYPTENQ VHKEPHRPFE LSNKTASDSG EHSIRFSTAG
0801: GRSMAISSDA LQRAKNLLGE SDLVVSTNNL VGYSLASACN DKMENSTAAP KEGGPDLSKR RRASGRTELA TFSHQAMSDR KHTGSFGNAA PTNESTNMFH
0901: VGSRSISEIP KITELSSRCL SEIDNANDTK DKTQELHMPA GALVDISNFM GAHSGKIDHA VNEKRRIGGR NSASSFKRPR SSRFITPISI NKQSSAGVPK
1001: LPPTQITSCR TKLSSSYPFK HKRKTWKEYF GGPPCFNCLT EHITDEVKLM DAKGAEKYKF HDTNTGAEEF QKMLLACGAS LTYATKEWVN NHYKWIVWKL
1101: ASLERCYPTK AVGKFLTVPN VLDELKYRYD REVNNGHRSA IKKILEGNAL PSLMMVLCIS AIYSHPDVNK LEAGGPDGNE NSIDNKSLLA AKRNMSAHIE
1201: LTDGWYALEA SLDVALSEQL QKRKLSMGQK LRIWGASLCG WTGPVSFHEA SGTVKLTIHV NGSYRARWDD PLGFCKHIGP PLAFKCIKAS GGRVPRTLVG
1301: VARIYPVLYR ERLPEGRSVV RSERMERKAL QLYQQRVSKI AEDIMSEQDE NCANTDDSEE GAKICKMLEQ AAEPEVMMAG MTSEQILSFS SYQAKQKEAR
1401: QNEVAKKVEN ALEVAGLSSR DVTPFLKVRV TSLVHRISAT KTINKEGLIT IWNPTEKQKA DLVEGQVYIA TGLLPSAHCT NILYLHARGS STTWNSLTSA
1501: QAADFEPFFT PRKAVELSWI GEVPLTSEFD IAGVVLHVGD VYSCSSQKRQ WLFLTDGSKF ISASQSTEQD DYLLAVSFSC STVGDDSAFF SYALSGNTVG
1601: FSNLVKRHKD QTRRIWVAEA TASSTYTLSH EISKKSHLKE AATRAEKWAS SSFDKIQQLK ERVLCIIGDS GG
0101: DALSKGRGAA DGCRVESMAD LLVQARNTLL EGDRMSGATV DAGEGQLFCT GSGRSVSVSE RAIRRARALV GEDVEKAGTK RKQPFDDVPG AEGELRETDA
0201: LFRGGVHNTT MPPVFQTGSG KTVLLGKDSI QKARAILGEQ PFDDVPDAEG ESSEMDAPFR GGAYNATRPP VFQTGSGKAV LLGKDSIQKA RVLLEDVDRA
0301: AGVVEPMFRT GMGRPVPVSR TSIDKARAAL EGQTVAEKGV DGMEQFPLFQ TGSGRVVSVS AASVQKAKSV LKDNSTSEEN TESFGRSNQA MMFPTGSGRP
0401: AMISERSIER SRVVGNKGDA KKSGHWDADC QFPMFQTGLG KPVAVSWSSV QKARAVLEEE KIKTTGRGDS SDCATTLQTE TPTSVMSSSL IMNDRSVTPK
0501: EDSAMQVTRI EKNHKDDDHV PLFQTGLGRS IAISKSSLKR ASAVLEPRNI AKELEDEVHL DGAHDTPVSR TGLGRSILAS ENSRKELPIL EAEEAVRSVN
0601: NYNGETFVEE ATFQAGIQKF VPQNRSSSHK ASMLLEQRNF MEKGYEDCGS QLPMFRTGSG KSVLISENSV QKARAVLEEQ GKISRDNPKL LNMDKKIPVF
0701: ASPLKTSCAR TVNISSVGVS RAATLLGLEE NTLSTQFFGH VGDKLGRKIN FERENPEQRP GLAPYPTENQ VHKEPHRPFE LSNKTASDSG EHSIRFSTAG
0801: GRSMAISSDA LQRAKNLLGE SDLVVSTNNL VGYSLASACN DKMENSTAAP KEGGPDLSKR RRASGRTELA TFSHQAMSDR KHTGSFGNAA PTNESTNMFH
0901: VGSRSISEIP KITELSSRCL SEIDNANDTK DKTQELHMPA GALVDISNFM GAHSGKIDHA VNEKRRIGGR NSASSFKRPR SSRFITPISI NKQSSAGVPK
1001: LPPTQITSCR TKLSSSYPFK HKRKTWKEYF GGPPCFNCLT EHITDEVKLM DAKGAEKYKF HDTNTGAEEF QKMLLACGAS LTYATKEWVN NHYKWIVWKL
1101: ASLERCYPTK AVGKFLTVPN VLDELKYRYD REVNNGHRSA IKKILEGNAL PSLMMVLCIS AIYSHPDVNK LEAGGPDGNE NSIDNKSLLA AKRNMSAHIE
1201: LTDGWYALEA SLDVALSEQL QKRKLSMGQK LRIWGASLCG WTGPVSFHEA SGTVKLTIHV NGSYRARWDD PLGFCKHIGP PLAFKCIKAS GGRVPRTLVG
1301: VARIYPVLYR ERLPEGRSVV RSERMERKAL QLYQQRVSKI AEDIMSEQDE NCANTDDSEE GAKICKMLEQ AAEPEVMMAG MTSEQILSFS SYQAKQKEAR
1401: QNEVAKKVEN ALEVAGLSSR DVTPFLKVRV TSLVHRISAT KTINKEGLIT IWNPTEKQKA DLVEGQVYIA TGLLPSAHCT NILYLHARGS STTWNSLTSA
1501: QAADFEPFFT PRKAVELSWI GEVPLTSEFD IAGVVLHVGD VYSCSSQKRQ WLFLTDGSKF ISASQSTEQD DYLLAVSFSC STVGDDSAFF SYALSGNTVG
1601: FSNLVKRHKD QTRRIWVAEA TASSTYTLSH EISKKSHLKE AATRAEKWAS SSFDKIQQLK ERVLCIIGDS GG
0001: MSTWHLFSDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIERE ESMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAENVAYSD
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
Arabidopsis Description
BRCA2BProtein BREAST CANCER SUSCEPTIBILITY 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q7Y1C4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.