Factsheet for HORVU7Hr1G091450.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G071540.2
HORVU3Hr1G015880.36
HORVU3Hr1G017990.10
HORVU5Hr1G040730.2
HORVU6Hr1G078680.2
HORVU7Hr1G091450.2
HORVU7Hr1G119270.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20850.1	HORVU1Hr1G071540.2	AT3G19210.1	17227544
AT5G20850.1	HORVU6Hr1G078680.2	AT3G19210.1	17227544
AT5G20850.1	HORVU7Hr1G119270.3	AT3G19210.1	17227544
AT5G20850.1	HORVU1Hr1G071540.2	AT3G19210.1	18430956
AT5G20850.1	HORVU6Hr1G078680.2	AT3G19210.1	18430956
AT5G20850.1	HORVU7Hr1G119270.3	AT3G19210.1	18430956
AT5G20850.1	HORVU5Hr1G040730.2	AT3G22880.1	15014444
AT5G20850.1	HORVU5Hr1G040730.2	AT3G22880.1	16415210
AT5G20850.1	HORVU3Hr1G015880.36	AT5G01630.1	15014444
AT5G20850.1	HORVU3Hr1G017990.10	AT5G01630.1	15014444
AT5G20850.1	HORVU3Hr1G015880.36	AT5G01630.1	16415210
AT5G20850.1	HORVU3Hr1G017990.10	AT5G01630.1	16415210
AT5G20850.1	HORVU7Hr1G091450.2	AT5G20850.1	15014444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G287700.1	Wheat	cytosol	92.14	99.13
TraesCS7A01G384800.1	Wheat	cytosol	91.6	98.54
TraesCS7D01G381300.1	Wheat	cytosol	91.33	98.54
Os12t0497300-01	Rice	cytosol	86.18	93.26
Zm00001d041757_P001	Maize	cytosol	85.91	93.24
OQU79150	Sorghum	cytosol	86.18	90.34
VIT_11s0016g00340.t01	Wine grape	cytosol	81.57	89.32
Solyc07g017540.2.1	Tomato	cytosol	81.03	87.43
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	26.02	85.71
Bra006580.1-P	Field mustard	cytosol	79.13	85.38
AT5G20850.1	Thale cress	cytosol	78.86	85.09
Bra002334.1-P	Field mustard	cytosol	78.59	84.8
KRH02540	Soybean	cytosol	78.59	84.55
KRH19405	Soybean	cytosol	78.59	84.3
CDY16571	Canola	cytosol	72.63	84.01
CDX92430	Canola	cytosol	72.63	84.01
CDX88837	Canola	cytosol	73.44	83.64
CDX70947	Canola	cytosol	73.44	83.64
HORVU5Hr1G040730.2	Barley	nucleus	46.07	49.13
HORVU1Hr1G011840.1	Barley	cytosol, nucleus, plastid	21.68	21.68
HORVU0Hr1G003380.15	Barley	cytosol	13.55	20.41
HORVU6Hr1G046290.5	Barley	plastid	20.05	19.58

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.3.2.4	Gene3D:3.40.50.300	UniProt:A0A287XB78	InterPro:AAA+_ATPase	InterPro:DNA_recomb/repair_Rad51
InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx	GO:GO:0000150	GO:GO:0000166	GO:GO:0000724
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003697	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006302	GO:GO:0006310
GO:GO:0006355	GO:GO:0006950	GO:GO:0006974	GO:GO:0007049	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0010332	GO:GO:0016787
GO:GO:0045003	GO:GO:1990426	EnsemblPlantsGene:HORVU7Hr1G091450	EnsemblPlants:HORVU7Hr1G091450.2	InterPro:IPR020587	InterPro:IPR020588
InterPro:P-loop_NTPase	PFAM:PF08423	PFAM:PF14520	PIRSF:PIRSF005856	PFscan:PS50162	PFscan:PS50163
PANTHER:PTHR22942	PANTHER:PTHR22942:SF45	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface	SMART:SM00382
SUPFAM:SSF47794	SUPFAM:SSF52540	TIGRFAMs:TIGR02239	UniParc:UPI000B4843D1	SEG:seg	:

Description

DNA repair protein RAD51 homolog [Source:UniProtKB/TrEMBL;Acc:A0A287XB78]

Coordinates

chrchr7H:-:559423123..559427439

Molecular Weight (calculated)

39664.7 Da

IEP (calculated)

6.320

GRAVY (calculated)

-0.083

Length

369 amino acids

Sequence
(BLAST)

001: PPPLLEKREK LTSSASLSLS LQVVGPMSSS AAHQKAAAAA PVEEEEAGEH GPFPIEHLQA SGIAAVDVKK LKDAGLCTVE SVAYSPRKDL LQIKGISEAK
101: VDKIMEAASK LVPLGFTSAT QLHAQRLEII QVTTGSRELD RILDGGIETG SITELYGEFR CGKTQLCHTL CVTCQLPLDQ GGGEGKALYI DAEGTFRPQR
201: LLQIADRFGL NGADVLENVA YARAYNTDHQ SRLLLEAASM MVETRFALMV IDSATALYRT DFSGRGELSA RQMHLAKFLR SLQKLADEFG VAVVISNQVV
301: AQVDGGAMFA GPQIKPIGGN IMAHASTTRL YLRKGRAEER ICKVVSSPCL AEAEARFQIS PEGVTDVKD

Best Arabidopsis Sequence Match ( AT5G20850.1 )
(BLAST)

001: MTTMEQRRNQ NAVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGVAYTPR KDLLQIKGIS DAKVDKIVEA ASKLVPLGFT SASQLHAQRQ
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMIETRFA LLIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD

Arabidopsis Description

RAD51DNA repair protein RAD51 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P94102]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.