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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 1
  • nucleus 2
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU7Hr1G091450.2

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU1Hr1G071540.2 Barley nucleus 95.71 98.17
Solyc04g056400.2.1 Tomato cytosol, nucleus, plastid 42.5 32.25
HORVU6Hr1G078680.2 Barley nucleus 83.57 23.95
TraesCS6A01G321200.1 Wheat nucleus 82.86 23.84
TraesCS6B01G351900.1 Wheat nucleus 82.14 22.93
Zm00001d018151_P003 Maize nucleus 77.14 22.31
EES07568 Sorghum nucleus 77.14 22.27
TraesCS6D01G300900.1 Wheat cytosol 82.86 21.91
Os02t0762800-00 Rice nucleus 76.43 21.84
HORVU1Hr1G064000.1 Barley cytosol, nucleus 23.93 20.94
GSMUA_Achr5P24600_001 Banana nucleus 68.21 20.45
KRH77966 Soybean nucleus 65.71 20.44
CDX99258 Canola nucleus 65.36 20.18
CDX92308 Canola nucleus 65.36 20.09
Bra022395.1-P Field mustard nucleus 65.36 20.04
AT3G19210.1 Thale cress nucleus 65.0 20.0
HORVU6Hr1G021370.1 Barley cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole 16.43 19.17
VIT_03s0063g00580.t01 Wine grape nucleus 66.43 19.02
Solyc04g056410.2.1 Tomato nucleus 19.29 9.2
HORVU6Hr1G061730.1 Barley cytosol, nucleus 11.43 9.07
HORVU2Hr1G037590.4 Barley plastid 25.36 8.1
HORVU2Hr1G127340.1 Barley cytosol 28.57 7.23
HORVU5Hr1G085320.1 Barley plastid 20.36 5.85
HORVU2Hr1G034330.2 Barley mitochondrion, nucleus, plastid 19.64 5.64
HORVU4Hr1G074230.3 Barley nucleus, plastid 19.29 5.26
HORVU3Hr1G014660.2 Barley nucleus 22.86 5.25
HORVU1Hr1G038370.1 Barley nucleus 27.86 5.24
HORVU6Hr1G061720.1 Barley cytosol 6.43 5.07
HORVU3Hr1G054100.2 Barley nucleus 18.21 4.01
HORVU2Hr1G014660.2 Barley nucleus 16.79 3.72
HORVU1Hr1G062970.3 Barley mitochondrion 18.57 3.51
HORVU6Hr1G021360.1 Barley cytosol, mitochondrion, nucleus 2.5 3.11
HORVU1Hr1G094870.2 Barley mitochondrion 21.43 2.9
HORVU2Hr1G024970.1 Barley nucleus 2.86 2.45
HORVU3Hr1G014630.1 Barley cytosol, nucleus, plastid 0.0 0.0
HORVU3Hr1G014620.1 Barley nucleus 0.0 0.0
Protein Annotations
EnsemblPlants:HORVU7Hr1G119270.3EnsemblPlantsGene:HORVU7Hr1G119270Gene3D:3.40.50.10810GO:GO:0000166GO:GO:0003674GO:GO:0005488
GO:GO:0005524InterPro:Helicase_ATP-bdInterPro:IPR014001InterPro:IPR038718InterPro:P-loop_NTPaseInterPro:SNF2-like_sf
InterPro:SNF2_NPANTHER:PTHR10799PANTHER:PTHR10799:SF889PFAM:PF00176PFscan:PS51192SEG:seg
SMART:SM00487SUPFAM:SSF52540UniParc:UPI000B4897C7UniProt:A0A287XZK2MapMan:35.1:
Description
No Description!
Coordinates
chrchr7H:-:649363799..649366498
Molecular Weight (calculated)
31145.0 Da
IEP (calculated)
8.802
GRAVY (calculated)
-0.020
Length
280 amino acids
Sequence
(BLAST)
001: MFDCVSGLLS DDGIAGCILV DDMGLGKTLQ SLTLLYTLLA QGFEGKPMVK RVVIVTPTSL VSNWESEISK WLKGKVHLLA LCESTRADVL FGIGSFLKPL
101: SHLQVLIISY ETFRMHSSKF EIPGSCDLLI CDEAHRLKNI QTLTNKSLAA LPCTRRILLS GTPMQNDLEE FFSMVNFTNP GVLGDAAYFR RYYEAPIIRG
201: RELTATAEEK KLGSERSLIP SFTTSAGMAS PWAPRRRRSP PLLMPLRSIY TQKAQVSVSN HFQPNQATNL LLHQQHSQVT
Best Arabidopsis Sequence Match ( AT3G19210.1 )
(BLAST)
001: MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV
Arabidopsis Description
CHR25Protein CHROMATIN REMODELING 25 [Source:UniProtKB/Swiss-Prot;Acc:Q0PCS3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.