Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc07g017540.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G19210.1 | Solyc07g017540.2.1 | AT5G20850.1 | 17227544 |
| AT3G19210.1 | Solyc07g017540.2.1 | AT5G20850.1 | 18430956 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G071540.2 | Barley | nucleus | 31.98 | 43.22 |
| HORVU7Hr1G119270.3 | Barley | nucleus | 32.25 | 42.5 |
| VIT_03s0063g00580.t01 | Wine grape | nucleus | 70.19 | 26.48 |
| AT3G19210.1 | Thale cress | nucleus | 65.04 | 26.37 |
| Bra022395.1-P | Field mustard | nucleus | 63.96 | 25.85 |
| Solyc08g061420.1.1 | Tomato | cytosol | 6.23 | 25.84 |
| CDX92308 | Canola | nucleus | 63.69 | 25.8 |
| CDX99258 | Canola | nucleus | 63.14 | 25.69 |
| KRH77966 | Soybean | nucleus | 60.98 | 25.0 |
| TraesCS6A01G321200.1 | Wheat | nucleus | 63.96 | 24.25 |
| HORVU6Hr1G078680.2 | Barley | nucleus | 63.69 | 24.05 |
| GSMUA_Achr5P24600_001 | Banana | nucleus | 60.7 | 23.98 |
| Os02t0762800-00 | Rice | nucleus | 63.69 | 23.98 |
| Zm00001d018151_P003 | Maize | nucleus | 62.33 | 23.76 |
| EES07568 | Sorghum | nucleus | 62.06 | 23.61 |
| Solyc08g062080.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 7.59 | 23.53 |
| TraesCS6B01G351900.1 | Wheat | nucleus | 62.87 | 23.13 |
| TraesCS6D01G300900.1 | Wheat | cytosol | 63.96 | 22.29 |
| Solyc08g061370.1.1 | Tomato | cytosol | 9.76 | 20.69 |
| Solyc03g061640.1.1 | Tomato | cytosol | 8.67 | 19.28 |
| Solyc08g061350.1.1 | Tomato | mitochondrion | 3.52 | 18.31 |
| Solyc08g062060.1.1 | Tomato | nucleus | 4.88 | 16.98 |
| Solyc08g077590.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 7.59 | 16.09 |
| Solyc01g049740.1.1 | Tomato | endoplasmic reticulum, extracellular | 8.13 | 12.45 |
| Solyc08g061390.1.1 | Tomato | cytosol | 7.86 | 11.69 |
| Solyc08g077600.1.1 | Tomato | cytosol | 11.92 | 11.2 |
| Solyc08g061340.1.1 | Tomato | cytosol | 6.5 | 10.76 |
| Solyc08g062070.1.1 | Tomato | cytosol | 3.52 | 9.77 |
| Solyc08g077670.1.1 | Tomato | cytosol | 11.11 | 9.05 |
| Solyc01g068320.1.1 | Tomato | cytosol | 15.72 | 8.68 |
| Solyc04g054440.1.1 | Tomato | nucleus | 15.18 | 8.55 |
| Solyc01g060460.1.1 | Tomato | nucleus | 16.8 | 8.15 |
| Solyc08g077690.2.1 | Tomato | nucleus | 16.26 | 8.1 |
| Solyc08g077610.1.1 | Tomato | nucleus | 14.36 | 7.92 |
| Solyc07g053870.2.1 | Tomato | plastid | 18.7 | 7.78 |
| Solyc02g033050.1.1 | Tomato | nucleus | 12.2 | 7.15 |
| Solyc08g062000.1.1 | Tomato | cytosol | 7.32 | 6.91 |
| Solyc08g061410.1.1 | Tomato | cytosol | 7.05 | 5.92 |
| Solyc04g050150.2.1 | Tomato | nucleus | 18.7 | 5.67 |
| Solyc08g061990.1.1 | Tomato | mitochondrion | 5.69 | 5.45 |
| Solyc08g074500.2.1 | Tomato | cytosol, nucleus, plastid | 18.16 | 5.28 |
| Solyc01g109970.2.1 | Tomato | extracellular | 12.74 | 5.18 |
| Solyc01g068280.2.1 | Tomato | nucleus | 15.99 | 4.86 |
| Solyc09g066480.2.1 | Tomato | nucleus | 15.18 | 4.62 |
| Solyc06g050510.2.1 | Tomato | nucleus | 15.18 | 4.35 |
| Solyc01g068300.1.1 | Tomato | cytosol | 4.07 | 3.85 |
| Solyc04g050160.2.1 | Tomato | nucleus | 2.71 | 3.17 |
| Solyc08g074520.1.1 | Tomato | nucleus | 4.61 | 2.59 |
| Solyc04g056410.2.1 | Tomato | nucleus | 1.63 | 1.02 |
| Solyc08g077580.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc08g077650.1.1 | Tomato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc04g056400.2.1 | EnsemblPlantsGene:Solyc04g056400.2 | Gene3D:3.40.50.10810 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:IPR014001 | InterPro:IPR038718 | InterPro:P-loop_NTPase | InterPro:SNF2-like_sf |
| InterPro:SNF2_N | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF889 | PFAM:PF00176 | PFscan:PS51192 | SEG:seg |
| SMART:SM00487 | SUPFAM:SSF52540 | UniParc:UPI0002765C65 | UniProt:K4BST8 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr4:+:54181333..54183761
Molecular Weight (calculated)
40756.5 Da
IEP (calculated)
4.865
GRAVY (calculated)
-0.207
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAEGEALSA SSDESLRVPE KDIDCVSNSG DDDDDDDEWN VASQTGTSSP DEDRKSQNVD ALVRGNLIVK RQSLLPRVYS VTDAAANLRK PFKPPSSNGY
101: SSSNEHLARR LCARKRFVPW GSTSPTLIAI TNRLKAPEAA EIDVVEDNLE LPPGVEPLVL WQPEEIVEEG YSLVPIIVDL LLVRFLRPHQ REGVQFMFDC
201: VSGALSSFNI NGCILADDMG LGKTLQSITL LYTLLRQGFD GKPMVRKAII ATPTSLVSNW EAEINKWVGE RVKLVALCES TRDDVVSGIE SFINPHSNIQ
301: VLIVSYETFR MHSSKFSNSG SCDLLICDEA HRLKNDQTLT NRALASLACK RRVLLSGTPM QVRSYLTFL
101: SSSNEHLARR LCARKRFVPW GSTSPTLIAI TNRLKAPEAA EIDVVEDNLE LPPGVEPLVL WQPEEIVEEG YSLVPIIVDL LLVRFLRPHQ REGVQFMFDC
201: VSGALSSFNI NGCILADDMG LGKTLQSITL LYTLLRQGFD GKPMVRKAII ATPTSLVSNW EAEINKWVGE RVKLVALCES TRDDVVSGIE SFINPHSNIQ
301: VLIVSYETFR MHSSKFSNSG SCDLLICDEA HRLKNDQTLT NRALASLACK RRVLLSGTPM QVRSYLTFL
001: MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVPSCA CY
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVPSCA CY
Arabidopsis Description
CHR25Protein CHROMATIN REMODELING 25 [Source:UniProtKB/Swiss-Prot;Acc:Q0PCS3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.