Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH34128 | Soybean | nucleus | 60.31 | 65.01 |
| KRG92726 | Soybean | nucleus | 64.58 | 52.93 |
| AT1G08600.3 | Thale cress | nucleus | 57.77 | 47.53 |
| CDX95047 | Canola | nucleus | 57.19 | 47.03 |
| CDX93550 | Canola | nucleus | 57.35 | 46.75 |
| HORVU1Hr1G038370.1 | Barley | nucleus | 53.41 | 43.68 |
| TraesCS1A01G144000.3 | Wheat | nucleus | 53.66 | 43.56 |
| TraesCS1D01G143000.1 | Wheat | nucleus | 53.41 | 43.54 |
| KXG38419 | Sorghum | nucleus | 52.42 | 43.02 |
| Zm00001d032801_P005 | Maize | nucleus | 52.26 | 42.86 |
| TraesCS1B01G161400.5 | Wheat | nucleus | 53.41 | 40.96 |
| Solyc08g077650.1.1 | Tomato | cytosol | 1.64 | 38.46 |
| Solyc08g061350.1.1 | Tomato | mitochondrion | 1.64 | 28.17 |
| Bra018612.1-P | Field mustard | nucleus | 57.35 | 26.94 |
| Solyc03g061640.1.1 | Tomato | cytosol | 3.62 | 26.51 |
| Solyc08g061420.1.1 | Tomato | cytosol | 1.81 | 24.72 |
| Solyc08g061370.1.1 | Tomato | cytosol | 3.53 | 24.71 |
| Solyc08g062080.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 2.38 | 24.37 |
| Solyc08g077590.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 3.45 | 24.14 |
| Solyc08g077580.1.1 | Tomato | cytosol | 3.37 | 23.7 |
| Solyc01g068300.1.1 | Tomato | cytosol | 7.48 | 23.33 |
| Solyc04g054440.1.1 | Tomato | nucleus | 11.67 | 21.68 |
| Solyc08g061340.1.1 | Tomato | cytosol | 3.86 | 21.08 |
| Solyc01g068320.1.1 | Tomato | cytosol | 11.5 | 20.96 |
| Solyc08g062000.1.1 | Tomato | cytosol | 6.66 | 20.72 |
| Solyc08g061990.1.1 | Tomato | mitochondrion | 6.49 | 20.52 |
| Solyc04g056410.2.1 | Tomato | nucleus | 9.78 | 20.27 |
| Solyc02g033050.1.1 | Tomato | nucleus | 10.35 | 20.03 |
| Solyc08g077610.1.1 | Tomato | nucleus | 11.01 | 20.03 |
| Solyc01g049740.1.1 | Tomato | endoplasmic reticulum, extracellular | 3.94 | 19.92 |
| Solyc07g053870.2.1 | Tomato | plastid | 14.3 | 19.62 |
| Solyc08g062070.1.1 | Tomato | cytosol | 2.14 | 19.55 |
| Solyc08g077690.2.1 | Tomato | nucleus | 11.59 | 19.03 |
| Solyc04g056400.2.1 | Tomato | cytosol, nucleus, plastid | 5.67 | 18.7 |
| Solyc01g060460.1.1 | Tomato | nucleus | 11.67 | 18.66 |
| Solyc08g077600.1.1 | Tomato | cytosol | 5.92 | 18.32 |
| Solyc08g061410.1.1 | Tomato | cytosol | 6.49 | 18.0 |
| Solyc08g062060.1.1 | Tomato | nucleus | 1.56 | 17.92 |
| Solyc09g066480.2.1 | Tomato | nucleus | 17.5 | 17.56 |
| Solyc01g109970.2.1 | Tomato | extracellular | 11.91 | 15.99 |
| Solyc08g077670.1.1 | Tomato | cytosol | 5.92 | 15.89 |
| Solyc08g061390.1.1 | Tomato | cytosol | 3.12 | 15.32 |
| Solyc01g068280.2.1 | Tomato | nucleus | 14.87 | 14.9 |
| Solyc08g074500.2.1 | Tomato | cytosol, nucleus, plastid | 14.79 | 14.2 |
| Solyc06g050510.2.1 | Tomato | nucleus | 12.08 | 11.42 |
| Solyc04g050160.2.1 | Tomato | nucleus | 1.81 | 6.98 |
| Solyc08g074520.1.1 | Tomato | nucleus | 0.58 | 1.07 |
Protein Annotations
| MapMan:12.4.1.3.2 | Gene3D:3.40.50.10810 | InterPro:ADD | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR025766 | InterPro:IPR038718 | UniProt:K4BRY7 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51533 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF843 | SMART:SM00487 |
| SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc04g050150.2 | EnsemblPlants:Solyc04g050150.2.1 |
| UniParc:UPI0002766BD4 | SEG:seg | : | : | : | : |
Description
Protein CHROMATIN REMODELING 20 [Source:Projected from Arabidopsis thaliana (AT1G08600) UniProtKB/Swiss-Prot;Acc:F4HW51]
Coordinates
chr4:-:45656390..45692928
Molecular Weight (calculated)
139086.0 Da
IEP (calculated)
7.850
GRAVY (calculated)
-0.555
Length
1217 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLGANVLLPF AIHNCQVEEI DDIEDSSGDP FVADAIANER ELNLSEEQKR KFKKVKEEDD LKTDLKLRRC LKQRRHKNRQ KLEEIQEDTT DVTTGYLSQD
0101: FGFDKKEYST VDDGDAPKSN EVTSVIDATV SEHEIDAEAK GLKLLHNFEE MEPQSKKARI IIPDSDEEDL PGKMLSPTCS LSETEDQSNP QRDGDNVLPV
0201: SSLPVCNEKQ NFRCTACDKV AIEVHAHPLL RVVLCLDCKT SMKTKMQDVD CSECYCRWCG RCSDLLSCKS CKRLFCSVCI RRNLGEEILT GIKTSGWQCC
0301: CCSPSILLPL VSVLEKIMES QGLVDSNTDT DSDNSDADIN EHKSTKRRPK KKIRRILDDT ELGEETKRKI AIEKERQERL KSLGAKFSSK TMFMDSGGCS
0401: KSSYETGSLE MLGDIQTGYI VNVVREEGEE AVRIPRSISA KLKSHQVAGI RFMWENIIQS IRKVKAGDKG LGCILAHTMG LGKTFQVISF LYAAMRCVDL
0501: GLRTALIVTP VSVLHNWRQE FIKWEPSEMK PLRVFMLEEV PRERRAELLQ KWRVKGGVFL IGYTAFRNLT LGKNIKERHV AREICQALQD GPDILVCDEA
0601: HIIKNTRADV TQALKQVKCQ RRIALTGSPL QNNLMEYYCM VDFVREGFLG SSHEFRNRFQ NPIENGQHTN STADDVKIMN QRSHILYEQL KGFVQRMDMN
0701: VVKMDLPPKT VYVMSVKLSP LQRKLYKRFL DVHGFTKDKV SGEKIMKRSF FAGYQALAQI WNHPGILQLT RENRISSRPE DPVEILLADD CSSDENTYYN
0801: VVSGEKTNSN NEALKKNHNG FLHGDWWSDL LDNNCKEVDY SGKMVLLLDI LTMSSNVGDK ALVFSQSLST LDLIEQYLSK LTRPGKKGKY WKRRKDWYRI
0901: DGRTESSERQ KLVDCFNSPL NRRVKCVLIS TRAGSLGINL YAANRVIIVD GSWNPTHDLQ AIYRAWRYGQ TKPVFAYRLL AHGTMEEKIY KRQVTKEGLA
1001: ARVVDRQQVH RTISKEEMLH LFEFGDDESC DIPLELKQVR EHAGEANSNV NVGSVQKQKL TFPNGSSSSD KLMQSLIDRH HPRWIANYHE HESLLQENED
1101: EKLSKEEQEM AWEVYRRSIE WEERRVLPDE PVEQQHISTT ESLLKQKPFV PRATVFPPAD RNLVFAVGSS RCRLVHRKCT KLSHLLTLRS QGTKWGCSTV
1201: CGECAQEIKW EGVRSAK
0101: FGFDKKEYST VDDGDAPKSN EVTSVIDATV SEHEIDAEAK GLKLLHNFEE MEPQSKKARI IIPDSDEEDL PGKMLSPTCS LSETEDQSNP QRDGDNVLPV
0201: SSLPVCNEKQ NFRCTACDKV AIEVHAHPLL RVVLCLDCKT SMKTKMQDVD CSECYCRWCG RCSDLLSCKS CKRLFCSVCI RRNLGEEILT GIKTSGWQCC
0301: CCSPSILLPL VSVLEKIMES QGLVDSNTDT DSDNSDADIN EHKSTKRRPK KKIRRILDDT ELGEETKRKI AIEKERQERL KSLGAKFSSK TMFMDSGGCS
0401: KSSYETGSLE MLGDIQTGYI VNVVREEGEE AVRIPRSISA KLKSHQVAGI RFMWENIIQS IRKVKAGDKG LGCILAHTMG LGKTFQVISF LYAAMRCVDL
0501: GLRTALIVTP VSVLHNWRQE FIKWEPSEMK PLRVFMLEEV PRERRAELLQ KWRVKGGVFL IGYTAFRNLT LGKNIKERHV AREICQALQD GPDILVCDEA
0601: HIIKNTRADV TQALKQVKCQ RRIALTGSPL QNNLMEYYCM VDFVREGFLG SSHEFRNRFQ NPIENGQHTN STADDVKIMN QRSHILYEQL KGFVQRMDMN
0701: VVKMDLPPKT VYVMSVKLSP LQRKLYKRFL DVHGFTKDKV SGEKIMKRSF FAGYQALAQI WNHPGILQLT RENRISSRPE DPVEILLADD CSSDENTYYN
0801: VVSGEKTNSN NEALKKNHNG FLHGDWWSDL LDNNCKEVDY SGKMVLLLDI LTMSSNVGDK ALVFSQSLST LDLIEQYLSK LTRPGKKGKY WKRRKDWYRI
0901: DGRTESSERQ KLVDCFNSPL NRRVKCVLIS TRAGSLGINL YAANRVIIVD GSWNPTHDLQ AIYRAWRYGQ TKPVFAYRLL AHGTMEEKIY KRQVTKEGLA
1001: ARVVDRQQVH RTISKEEMLH LFEFGDDESC DIPLELKQVR EHAGEANSNV NVGSVQKQKL TFPNGSSSSD KLMQSLIDRH HPRWIANYHE HESLLQENED
1101: EKLSKEEQEM AWEVYRRSIE WEERRVLPDE PVEQQHISTT ESLLKQKPFV PRATVFPPAD RNLVFAVGSS RCRLVHRKCT KLSHLLTLRS QGTKWGCSTV
1201: CGECAQEIKW EGVRSAK
0001: MEANEESLKG KIEKLEGKEV IVESKEDEMD IIIEENREAE QEVMEVKARD GRGEQNDVLM EENNNQGEQK DEEMQDASSR SESSDFNSDE DEQILSRRDD
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRE RRFDLLTKWR KKGGVFLMGY TNFRNLSLGR GVKDLNAARG ICNALRDGPD ILVCDEAHII KNTKADTTQA LKQVKCQRRI
0901: ALTGSPLQNN LMEYYCMVDF VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEQLKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR
1001: ILYQRFLELY GFSDGRTDER MRKNFFAAYQ VLAQILNHPG IPQLRSEDSK NGRRGSIVDI PDDCSSDENI DYNMVTGEKQ RTMNDLQDKV DGYLQKDWWV
1101: DLLQKNNYKV SDFSGKMILL LDILSMSADV GDKALVFSQS IPTLDLIELY LSRVPRHGKQ GKFWKKGKDW YRIDGKTESS ERQKLVDRFN EPDNKRVKCT
1201: LISTRAGSLG INLYAANRVI IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVTKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD
1301: DEKSEAVTEI SKQNEAGHSN LVEQAILWTK KATLSRVGGD KLMENLLQRH GPNWISSFHE HETLLQENEE ERLTKEEKDM AWEVYRRALE WEEVQRVPFS
1401: ESPVVPKPSP STQTEPLPQP KGFNRSRFVN RNCTRIAHQL TLISQGLKVG SSTVCGECGR VIRWEDVIPA SKLSAVIVN
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRE RRFDLLTKWR KKGGVFLMGY TNFRNLSLGR GVKDLNAARG ICNALRDGPD ILVCDEAHII KNTKADTTQA LKQVKCQRRI
0901: ALTGSPLQNN LMEYYCMVDF VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEQLKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR
1001: ILYQRFLELY GFSDGRTDER MRKNFFAAYQ VLAQILNHPG IPQLRSEDSK NGRRGSIVDI PDDCSSDENI DYNMVTGEKQ RTMNDLQDKV DGYLQKDWWV
1101: DLLQKNNYKV SDFSGKMILL LDILSMSADV GDKALVFSQS IPTLDLIELY LSRVPRHGKQ GKFWKKGKDW YRIDGKTESS ERQKLVDRFN EPDNKRVKCT
1201: LISTRAGSLG INLYAANRVI IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVTKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD
1301: DEKSEAVTEI SKQNEAGHSN LVEQAILWTK KATLSRVGGD KLMENLLQRH GPNWISSFHE HETLLQENEE ERLTKEEKDM AWEVYRRALE WEEVQRVPFS
1401: ESPVVPKPSP STQTEPLPQP KGFNRSRFVN RNCTRIAHQL TLISQGLKVG SSTVCGECGR VIRWEDVIPA SKLSAVIVN
Arabidopsis Description
ATRXCHR20 [Source:UniProtKB/TrEMBL;Acc:A0A178VZQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.