Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95047 | Canola | nucleus | 95.45 | 96.28 |
| AT1G08600.3 | Thale cress | nucleus | 83.46 | 84.25 |
| CDY22674 | Canola | nucleus | 39.79 | 77.14 |
| CDY06321 | Canola | nucleus | 26.39 | 67.7 |
| VIT_14s0036g01460.t01 | Wine grape | nucleus | 60.55 | 61.21 |
| KRH34128 | Soybean | nucleus | 45.14 | 59.7 |
| KRG92726 | Soybean | nucleus | 59.01 | 59.33 |
| Solyc04g050150.2.1 | Tomato | nucleus | 46.75 | 57.35 |
| GSMUA_Achr4P25080_001 | Banana | nucleus | 42.93 | 56.83 |
| Bra018612.1-P | Field mustard | nucleus | 98.12 | 56.54 |
| Solyc04g050160.2.1 | Tomato | nucleus | 11.32 | 53.65 |
| GSMUA_Achr4P25070_001 | Banana | golgi | 8.77 | 51.78 |
| CDX78226 | Canola | cytosol | 3.35 | 27.03 |
| CDX92308 | Canola | nucleus | 13.73 | 22.5 |
| CDX99258 | Canola | nucleus | 13.53 | 22.27 |
| CDY67491 | Canola | cytosol | 2.34 | 22.15 |
| CDX77430 | Canola | nucleus | 9.65 | 21.4 |
| Os07t0692600-01 | Rice | mitochondrion | 6.36 | 20.0 |
| CDY59589 | Canola | nucleus | 2.34 | 19.89 |
| CDY29038 | Canola | nucleus | 2.34 | 19.89 |
| CDY23754 | Canola | cytosol | 10.25 | 19.84 |
| CDY37734 | Canola | nucleus | 10.05 | 19.84 |
| CDX92882 | Canola | nucleus | 14.47 | 19.13 |
| CDY51705 | Canola | nucleus | 14.6 | 18.81 |
| CDX89710 | Canola | nucleus | 9.91 | 17.13 |
| CDX84469 | Canola | cytosol, mitochondrion, nucleus, plastid | 12.32 | 16.06 |
| CDY16534 | Canola | nucleus | 4.69 | 16.05 |
| CDY43772 | Canola | mitochondrion | 12.26 | 15.78 |
| CDX93009 | Canola | nucleus | 10.25 | 15.77 |
| CDX94823 | Canola | nucleus | 10.18 | 15.61 |
| CDY66441 | Canola | nucleus | 10.25 | 14.81 |
| CDY56857 | Canola | cytosol | 10.65 | 12.57 |
| CDX92463 | Canola | nucleus | 10.45 | 12.33 |
| CDY10115 | Canola | nucleus | 10.98 | 11.89 |
| CDY47279 | Canola | nucleus | 10.65 | 11.89 |
| CDY37413 | Canola | mitochondrion, nucleus | 12.32 | 11.49 |
| CDY32510 | Canola | mitochondrion, nucleus | 12.32 | 11.46 |
| CDX73492 | Canola | mitochondrion | 14.87 | 10.67 |
| CDX78225 | Canola | mitochondrion | 11.79 | 8.72 |
| Os02t0161200-01 | Rice | nucleus | 2.01 | 7.04 |
| CDY13196 | Canola | cytosol, nucleus, plastid | 1.14 | 4.34 |
| Os07t0692500-01 | Rice | cytosol | 1.27 | 3.34 |
| KRH28211 | Soybean | mitochondrion | 0.13 | 2.17 |
| KRH77275 | Soybean | cytosol | 0.13 | 2.17 |
| Os07t0692401-00 | Rice | mitochondrion | 0.27 | 0.83 |
Protein Annotations
| MapMan:12.4.1.3.2 | Gene3D:3.40.50.10810 | GO:A0A078DW58 | InterPro:ADD | EnsemblPlants:CDX93550 | ProteinID:CDX93550 |
| ProteinID:CDX93550.1 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00156226001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR025766 |
| InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51533 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF843 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf |
| InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI0004EEC7F9 | SEG:seg | : | : |
Description
BnaA06g04980D
Coordinates
chrLK031876:-:676980..686759
Molecular Weight (calculated)
170085.0 Da
IEP (calculated)
5.169
GRAVY (calculated)
-0.644
Length
1493 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDGREDTVEG KEEDRMEVEI DKVEAREEEQ NDEVMMEENN NQDEQKDDEE MQDTDLRSES SVSNSDEEEG LRSGNDDELD LEKPLSEEEV DELISDLLGV
0101: ESKAAEAQEA LEKESLSKVE SEVREELAQT LDGDELDKAV EAEMITFKDE WEATLDELEI ESANLLEQLD GAGIELPKLY EMIESQAPNG CYTEAWKKRA
0201: HWVGTQVTKE TGESLANAES FLLTHRPVRK RHGKLLEEGA SGFLEKKFAD DAVKECLTGT SELDWPSLNK VFSEKKDEAI SFGSKHWASV YLASTPQQAA
0301: AMGLEFPGVN EVEEIEEIDE SLADPFFADA IENERELALT EEQKKNYIRV KEEDDINIDR ELQLRLKRKR RMKRSKQVLR HTAEDRDDDS AYLYGNSIAP
0401: DPAKDQVKCP ENSTEFQNNE VNKEANGNLS NSDADKMVPV ADLNVDTMRD DSQNPASNFR CTACNNVTVE VHSHPLLEVI VCMDCKRLIE DRVAKVDASL
0501: ERHCEWCGHI ADLINCRSCE KLFCASCIKR NIGEEYLSEA QSSGWDCCCC APIPLRRLTL ELEKAMGDKK SMESSSDSSS DSSSDSSSDN NSVDTDADVN
0601: VAVSSKKKSK KKIRRIIDDA ELGKDTRSKI AIEKKRQERL RSLQFSARYK TISSMGDVKI PEGAEAEVLG DAHSGYIVNV AREIGEEAVR VPRSISAKLK
0701: PHQVTGIRFM WENIIQSINS VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK SALIVTPVNV LHNWRSEFTK WMPSEVKPLR IFMLEDVSRE
0801: RRLDLLRKWR NKGGVFLMGY AAFRNLSLGR GVKDINAAKE FCSALRDGPD ILVCDEAHII KNTRADTTQA LKQVKCQRRI ALTGSPLQNN LMEYYCMVDF
0901: VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEELKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR KLYKRFLKLY GFNDGRADER
1001: MRKNFFAAYQ VLAQILNHPG IPQLRSEDKK QGRRGSIVDI PDDCSSDENL DCNMVAGEKQ RNMSDLQDKV DGYLQKDWWV DLLQKNNYKV SEYSGKMILL
1101: LDILSMCAHV GDKALVFSQS IPTLDLIELY LSRVARHGKH GKCWKKGKDW YRIDGKTESS ERQKLVDKFN EPENKRVKCT LISTRAGSLG INLYAANRVI
1201: IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVNKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD DEKSDAVTEI SKRKEAATSS
1301: RGCDSDKLME NLLQRHSPDW ISSFHEHETL LQENEDERLT KEEKDMAWEV YRKALQWEEV QRTPVNEAPV LQKPSPSPQI QPLRHPRGFN RSRFVNRSCT
1401: RIAHELTLIS QRRKLGSSTI CGECGCVITW EDVLPAPKLS ESNHIIARFC FSNLNLRIIL ADDHVLGNSI WNRTRHYQDS QDSHCFIHLI DSG
0101: ESKAAEAQEA LEKESLSKVE SEVREELAQT LDGDELDKAV EAEMITFKDE WEATLDELEI ESANLLEQLD GAGIELPKLY EMIESQAPNG CYTEAWKKRA
0201: HWVGTQVTKE TGESLANAES FLLTHRPVRK RHGKLLEEGA SGFLEKKFAD DAVKECLTGT SELDWPSLNK VFSEKKDEAI SFGSKHWASV YLASTPQQAA
0301: AMGLEFPGVN EVEEIEEIDE SLADPFFADA IENERELALT EEQKKNYIRV KEEDDINIDR ELQLRLKRKR RMKRSKQVLR HTAEDRDDDS AYLYGNSIAP
0401: DPAKDQVKCP ENSTEFQNNE VNKEANGNLS NSDADKMVPV ADLNVDTMRD DSQNPASNFR CTACNNVTVE VHSHPLLEVI VCMDCKRLIE DRVAKVDASL
0501: ERHCEWCGHI ADLINCRSCE KLFCASCIKR NIGEEYLSEA QSSGWDCCCC APIPLRRLTL ELEKAMGDKK SMESSSDSSS DSSSDSSSDN NSVDTDADVN
0601: VAVSSKKKSK KKIRRIIDDA ELGKDTRSKI AIEKKRQERL RSLQFSARYK TISSMGDVKI PEGAEAEVLG DAHSGYIVNV AREIGEEAVR VPRSISAKLK
0701: PHQVTGIRFM WENIIQSINS VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK SALIVTPVNV LHNWRSEFTK WMPSEVKPLR IFMLEDVSRE
0801: RRLDLLRKWR NKGGVFLMGY AAFRNLSLGR GVKDINAAKE FCSALRDGPD ILVCDEAHII KNTRADTTQA LKQVKCQRRI ALTGSPLQNN LMEYYCMVDF
0901: VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEELKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR KLYKRFLKLY GFNDGRADER
1001: MRKNFFAAYQ VLAQILNHPG IPQLRSEDKK QGRRGSIVDI PDDCSSDENL DCNMVAGEKQ RNMSDLQDKV DGYLQKDWWV DLLQKNNYKV SEYSGKMILL
1101: LDILSMCAHV GDKALVFSQS IPTLDLIELY LSRVARHGKH GKCWKKGKDW YRIDGKTESS ERQKLVDKFN EPENKRVKCT LISTRAGSLG INLYAANRVI
1201: IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVNKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD DEKSDAVTEI SKRKEAATSS
1301: RGCDSDKLME NLLQRHSPDW ISSFHEHETL LQENEDERLT KEEKDMAWEV YRKALQWEEV QRTPVNEAPV LQKPSPSPQI QPLRHPRGFN RSRFVNRSCT
1401: RIAHELTLIS QRRKLGSSTI CGECGCVITW EDVLPAPKLS ESNHIIARFC FSNLNLRIIL ADDHVLGNSI WNRTRHYQDS QDSHCFIHLI DSG
0001: MEANEESLKG KIEKLEGKEV IVESKEDEMD IIIEENREAE QEVMEVKARD GRGEQNDVLM EENNNQGEQK DEEMQDASSR SESSDFNSDE DEQILSRRDD
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRE RRFDLLTKWR KKGGVFLMGY TNFRNLSLGR GVKDLNAARG ICNALRDGPD ILVCDEAHII KNTKADTTQA LKQVKCQRRI
0901: ALTGSPLQNN LMEYYCMVDF VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEQLKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR
1001: ILYQRFLELY GFSDGRTDER MRKNFFAAYQ VLAQILNHPG IPQLRSEDSK NGRRGSIVDI PDDCSSDENI DYNMVTGEKQ RTMNDLQDKV DGYLQKDWWV
1101: DLLQKNNYKV SDFSGKMILL LDILSMSADV GDKALVFSQS IPTLDLIELY LSRVPRHGKQ GKFWKKGKDW YRIDGKTESS ERQKLVDRFN EPDNKRVKCT
1201: LISTRAGSLG INLYAANRVI IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVTKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD
1301: DEKSEAVTEI SKQNEAGHSN LVEQAILWTK KATLSRVGGD KLMENLLQRH GPNWISSFHE HETLLQENEE ERLTKEEKDM AWEVYRRALE WEEVQRVPFS
1401: ESPVVPKPSP STQTEPLPQP KGFNRSRFVN RNCTRIAHQL TLISQGLKVG SSTVCGECGR VIRWEDVIPA SKLSAVIVN
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRE RRFDLLTKWR KKGGVFLMGY TNFRNLSLGR GVKDLNAARG ICNALRDGPD ILVCDEAHII KNTKADTTQA LKQVKCQRRI
0901: ALTGSPLQNN LMEYYCMVDF VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEQLKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR
1001: ILYQRFLELY GFSDGRTDER MRKNFFAAYQ VLAQILNHPG IPQLRSEDSK NGRRGSIVDI PDDCSSDENI DYNMVTGEKQ RTMNDLQDKV DGYLQKDWWV
1101: DLLQKNNYKV SDFSGKMILL LDILSMSADV GDKALVFSQS IPTLDLIELY LSRVPRHGKQ GKFWKKGKDW YRIDGKTESS ERQKLVDRFN EPDNKRVKCT
1201: LISTRAGSLG INLYAANRVI IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVTKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD
1301: DEKSEAVTEI SKQNEAGHSN LVEQAILWTK KATLSRVGGD KLMENLLQRH GPNWISSFHE HETLLQENEE ERLTKEEKDM AWEVYRRALE WEEVQRVPFS
1401: ESPVVPKPSP STQTEPLPQP KGFNRSRFVN RNCTRIAHQL TLISQGLKVG SSTVCGECGR VIRWEDVIPA SKLSAVIVN
Arabidopsis Description
ATRXCHR20 [Source:UniProtKB/TrEMBL;Acc:A0A178VZQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.