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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 1
  • mitochondrion 4
  • plasma membrane 1
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX78226 Canola cytosol 8.84 99.46
Bra007061.1-P Field mustard mitochondrion 97.65 99.22
CDX78225 Canola mitochondrion 89.0 91.73
AT3G54280.2 Thale cress mitochondrion 89.91 87.88
CDY13196 Canola cytosol, nucleus, plastid 16.15 85.71
PGSC0003DMT400076122 Potato cytosol, nucleus, plastid 27.68 79.34
KXG34530 Sorghum endoplasmic reticulum, golgi, plasma membrane 6.25 74.29
Solyc08g074500.2.1 Tomato cytosol, nucleus, plastid 43.97 72.16
GSMUA_Achr4P27500_001 Banana mitochondrion 62.28 63.16
KXG22701 Sorghum mitochondrion 60.21 61.18
Zm00001d039160_P031 Maize cytosol, mitochondrion, nucleus, plasma membrane 60.07 61.15
HORVU1Hr1G094870.2 Barley mitochondrion 60.07 60.42
TraesCS1A01G442400.2 Wheat mitochondrion 60.02 60.37
TraesCS1B01G476500.1 Wheat mitochondrion 60.02 60.37
TraesCS1D01G450200.1 Wheat mitochondrion 59.97 60.32
CDX92308 Canola nucleus 8.79 20.09
CDX99258 Canola nucleus 8.75 20.07
CDX92882 Canola nucleus 10.62 19.57
CDY51705 Canola nucleus 10.52 18.9
CDX84469 Canola cytosol, mitochondrion, nucleus, plastid 10.24 18.59
CDY43772 Canola mitochondrion 10.33 18.53
CDY59589 Canola nucleus 1.44 17.05
CDX77430 Canola nucleus 5.48 16.94
CDY29038 Canola nucleus 1.39 16.48
CDX93550 Canola nucleus 10.67 14.87
CDX95047 Canola nucleus 10.48 14.73
CDY67491 Canola cytosol 1.06 13.92
CDY22674 Canola nucleus 5.09 13.77
CDY37734 Canola nucleus 4.95 13.62
CDY23754 Canola cytosol 5.05 13.62
CDX89710 Canola nucleus 5.62 13.54
CDY66441 Canola nucleus 6.49 13.07
CDX93009 Canola nucleus 5.72 12.27
CDX94823 Canola nucleus 5.72 12.22
CDY56857 Canola cytosol 7.16 11.78
CDX92463 Canola nucleus 7.11 11.7
CDY37413 Canola mitochondrion, nucleus 8.75 11.36
CDY32510 Canola mitochondrion, nucleus 8.75 11.33
CDY10115 Canola nucleus 7.4 11.17
CDY47279 Canola nucleus 7.16 11.14
CDY16534 Canola nucleus 2.26 10.78
CDY06321 Canola nucleus 2.21 7.9
Protein Annotations
Gene3D:1.25.10.10MapMan:12.4.1.4.2MapMan:15.3.5.7.2Gene3D:3.40.50.10810GO:A0A078C9F5InterPro:ARM-like
InterPro:ARM-type_foldEnsemblPlants:CDX73492ProteinID:CDX73492ProteinID:CDX73492.1InterPro:DUF3535GO:GO:0000166
GO:GO:0003674GO:GO:0005488GO:GO:0005524EnsemblPlantsGene:GSBRNA2T00109007001InterPro:Helicase_ATP-bdInterPro:Helicase_C
InterPro:IPR001650InterPro:IPR011989InterPro:IPR014001InterPro:IPR038718InterPro:P-loop_NTPasePFAM:PF00176
PFAM:PF00271PFAM:PF12054PFscan:PS51192PFscan:PS51194PANTHER:PTHR36498SMART:SM00487
SMART:SM00490InterPro:SNF2-like_sfInterPro:SNF2_NSUPFAM:SSF48371SUPFAM:SSF52540TMHMM:TMhelix
UniParc:UPI0004EEDF06SEG:seg::::
Description
BnaC08g25110D
Coordinates
chrLK031799:-:704020..716160
Molecular Weight (calculated)
231517.0 Da
IEP (calculated)
6.067
GRAVY (calculated)
-0.146
Length
2081 amino acids
Sequence
(BLAST)
0001: MAQQQQSSRL SRLLTLLDTG STQTTRLTAA RQIGDIAKSH PQDLCSLLRK VLHYLRSRKW DTRVAAAHAI GAIVLNVKHT SLSELLNSLA TKLGEAGLSG
0101: NVDEVVASGN LQSKLLENAP FRSFEMNKVL EFGALLASGG QEYDILNDNS KNPRDRMARQ KKNLRRRLGL DMCEQFMDVN EMIGDEDLIE QKSNVHANGV
0201: GNRLYANYSP HHIQQFVSRM VPRVAHRRPS ARELNLLKRK AKISSKDQAK GNCEGADVEM SSSHASTSKR TLSDSMDSNK ANIGNEDDME PDADGRWPFH
0301: SFVEQLILDM FDPAWEIRHG SVMALREILM LHGGSAGVST AEFSSDNGFD LNEDLTKVTR EKEIDLNMQF SVNELEPLRK RPKIEDPSKS FVGNTVLEPM
0401: VSDYENSVKD EEVESLLPPV KVNGQVNFIS TKEEPESSID GSSCQSDRNH VAEVSNHVED KSFVEKPLLP NKNQEENIEV LDLVKQARHS WIKNFEFLQD
0501: CTIRFLCVLS LDRFGDYISD QVVAPVREAC AQALGATFKY MSPSLIYETL NILLQMQRRP EWEIRHGSLL GIKYLVAVRQ EMLQDLLGHI LPACKAGLED
0601: SDDDVRAVAA DALIPAAAAI VSLRGQTLLS IVMLLWDILL ELDDLSPSTS SVMNLLAEIY SQDDMTVVMH EELSVGEGQK VDLNEMVHVE SVRERRDVRE
0701: SPYALSGLAP RLWPFTRHDI TSVRFSAIRT LERLLEAGCR KNISEQSKSS FWPSSILGDT LRIVFQNLLL ESTEEILECS ERVWRLLVQC PVEDLEEAAK
0801: SYMASWIELA ATPYGSTLDA TKMFWPVAPP RMSHFKAAAK MKAVQLENEA SSTLGFDYVR SFASLGKNED ASARSTKIIV GSDMEMSVTR TRVVTASALG
0901: ILASRLSDRS MQFVVDPLSS TLTSLSGVQR QVASVVLISW FREIKCKVPS PSDGSGSLPG FPTPLKKWML DLLACSHPAF PTKDILLPYA ELSRTYTKMR
1001: NEASQLLHTV ETYHCFDKLL STTKLNADSL SADETIEFAS TLALWNKDSA EKESLEKQVF EDVESSRQQL LSTAGYLKCV QNNLHITVTS LIAAAVVWMS
1101: EFPSRLNPII LPLMASIKRE QEQILQQKAA EALAELIAYC VDRKPSPNDK LIKNICSLTC MDPGETPQAS IIRSIDIVDD LDFLSSRSNA GKQKSKAVLA
1201: GGEDRSKVEG FITRRGAELA LKHLSVKFGG SLFDKLPKLW ECLTEVLVPV TPEDQQNFDL KIESVSDPQV LINNIQVVRS VAPVMEETLK PRLLSLLPCI
1301: FKCVRHSHVA VRLAASRCVM TMAKSMTTNV MAAVVENAIP MLGDLTCVNA RQGAGMLIGL LVQGLGVELV PYSPLLVVPL LRCMSDVDSS VRQSVTRSFA
1401: ALVPMLPLAR GVPPPVGLSQ DLSSNAEDAK FLEQLLDNSH IDDYKLCTEL KVTLRRYQQE GINWLGFLKR FKLHGILCDD MGLGKTLQAS AIVASDAAER
1501: RGVTDEPDVF PSIIVCPSTL VGHWAFEIEK YIDLSLLSVL QYVGSAQDRV SLRELFKNHN VIITSYDVVR KDADYLTQFS WNYCILDEGH IIKNAKSKIT
1601: SAVKQLKAQH RLILSGTPIQ NNIIELWSLF DFLMPGFLGT ERQFQASYGK PLLAARDPKC SAKDAEAGVL AMEALHKQVM PFLLRRTKEE VLSDLPEKII
1701: QDRYCDLSPV QLKLYEQFSG SHAKREISTI IKVDGSADSS NVEVAPTKAS THVFQALQYL LKLCSHPLLV LGEKVTEPVA SDLAAMLNGC SDIITELHKV
1801: QHSPKLVALQ EILEECGIGS EASSSDGTLS VGQHRVLIFA QHKALLDIIE KDLFQAHMKR RVQLVNLHFL LYNDLVYWTI LLLICLCLFL ESSVTYMRLD
1901: GSVVPEKRFE IVKAFNSDPT IDVLLLTTHV GGLGLNLTSA DTIVFMEHDW NPMRDHQAMD RAHRLGQKRV VNVHRLIMRG TLEEKVMSLQ RFKVSVANTV
2001: INAENASMKT MNTDQLLDLF ASAETSKKGG ASSKKGAEDN DQTAGTGKGI KAILGNLEEL WDQSQYTEEY NLNQFLAKLN G
Best Arabidopsis Sequence Match ( AT3G54280.1 )
(BLAST)
0001: MAQQQSSRLN RLLTLLDTGS TQATRLTAAK QIGDIAKSHP QDLSSLLRKV LHHLRSKKWD TRVAAAHAIG AIVLNVKHPS LSELLNSLAT KLGEAGISDN
0101: VDEVVAFRNL QSKILANAPF RSFEMNKVLE FGALLASGGQ EYDILNDNSK NPRDRVARQK KNLRRRLGLD MCEQFMDVNE MIRDEDLIEQ KSNVPANGVG
0201: NRLYANCSPH HIQQFVSRMV PRVNSRRPSA RELNLLKRKA KISSKDQAKG SCEVADVEMS SSHVASTSKR ILSDSLDSSK ADIGNEDDIE PDGDGKWPFH
0301: SFVEQLILDM FDPAWEIRHG SVMALREILM LHGGSAGVST EEFSSDNGFE LKDVLNKVTR EREIDLNMQV SENELEPLRK RPKIEDPSKS FIDNTVLEVI
0401: GGDYDINVKD EDAEFLLPPV KVNGQTDCSS TKLEPQSSMD DSTSHSEINH VAEVNNHFED KSFIEEPVIP KQQEENLEVL DLVKQARHSW IKNFEFLQDC
0501: TIRFLCVLSL DRFGDYISDQ VVAPVREACA QALGATFKYM NPSLIYETLN ILLQMQRRPE WEIRHGSLLG IKYLVAVRQE MLQDLLGYIL PACKAGLEDS
0601: DDDVRAVAAD ALIPAAAAIV SLRGQTLLSI VMLLWDILLE LDDLSPSTSS IMNLLAEIYS QDDMTLVMHE ELSLGEEQNI ELNEMGHIES IGERRDVKES
0701: PYALSGLAPR LWPFTRHDIT SVRFSAIRTL ERLLEAGCRK NISGQSKSSF WPSSILGDTL RIVFQNLLLE STEEILECSE RVWRLLVQCP VDDLEDTAKF
0801: YMASWIELAA TPYGSTLDAT KMFWPVAPPR KSHFKAAAKM KAVKLENEAS SILGFDYARS SASLEKQEDA SARSTKIIVG SDMEMSVTRT RVVTASALGI
0901: FASRLREGSM QFVVDPLSST LTSMSGVQRQ VGSIVLISWF RETKCKAPSD GSGSLPGFPS PLKKWLLDLL ACADPAFPTK DIFLPYAELS RTYTKMRNEA
1001: SQLLHTVETC HCFDKLLSTN KLNVESVTAD ETIDFASTLD LWNKESAGNE SLEKQVFEDV ESSRQQLLST AGYLKCVQSN LHITVTSLVA AAVVWMSEFP
1101: ARLNPIILPL MASIKREQEQ ILQQIAAEAL AELIAYCVDR KPSPNDKLIK NICSLTCMDP SETPQASIIS SMDIVDDMDF LSSRSNTGKQ KAKVVLASGE
1201: DRSKVEGFIT RRGSELALKH LSLKFGGSLF DKLPKLWECL TEVLVPEIPS DQQKIDLKIE SISDPQVLIN NIQVVRSIAP VMEETLKPRL LSLLPCIFKC
1301: VRHSHVAVRL AASRCVMTMA KSMTTDVMAA VVESAIPMLG DLTCISGRQG AGMLIGLLVQ GLGVELVPYS PLLVVPLLRC MSDVDSSVRQ SVTRSFAALV
1401: PMLPLARGVP PPVGLSKDLS SNAEDAKFLE QLLDNSHIDD YKLCTELKVQ LRRYQQEGIN WLGFLKRFKL HGILCDDMGL GKTLQASAIV ASDAAERRGS
1501: TDELDVFPSI IVCPSTLVGH WAFEIEKYID LSLLSVLQYV GSAQDRVSLR EQFNNHNVII TSYDVVRKDV DYLTQFSWNY CILDEGHIIK NAKSKITAAV
1601: KQLKAQHRLI LSGTPIQNNI MELWSLFDFL MPGFLGTERQ FQASYGKPLL AARDPKCSAK DAEAGVLAME ALHKQVMPFL LRRTKEEVLS DLPEKIIQDR
1701: YCDLSPVQLK LYEQFSGSSA KQEISSIIKV DGSADSGNAD VAPTKASTHV FQALQYLLKL CSHPLLVLGD KVTEPVASDL AAMINGCSDI ITELHKVQHS
1801: PKLVALQEIL EECGIGSDAS SSDGTLSVGQ HRVLIFAQHK ALLDIIEKDL FQAHMKSVTY MRLDGSVVPE KRFEIVKAFN SDPTIDVLLL TTHVGGLGLN
1901: LTSADTLVFM EHDWNPMRDH QAMDRAHRLG QKRVVNVHRL IMRGTLEEKV MSLQKFKVSV ANTVINAENA SMKTMNTDQL LDLFASAETS KKGGGSSKKG
2001: SEDNDQIAGT GKGMKAILGN LEELWDQSQY TEEYNLSQFL TKLNG
Arabidopsis Description
RGD3ROOT GROWTH DEFECTIVE 3 [Source:UniProtKB/TrEMBL;Acc:F4JCU6]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.