Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06321 | Canola | nucleus | 62.86 | 83.16 |
| CDX95047 | Canola | nucleus | 77.4 | 40.27 |
| CDX93550 | Canola | nucleus | 77.14 | 39.79 |
| CDX78226 | Canola | cytosol | 6.1 | 25.41 |
| KXG38419 | Sorghum | nucleus | 47.79 | 24.81 |
| Os10t0457700-01 | Rice | nucleus | 42.34 | 24.72 |
| Zm00001d032801_P005 | Maize | nucleus | 47.53 | 24.66 |
| TraesCS1D01G143000.1 | Wheat | nucleus | 47.27 | 24.38 |
| TraesCS1A01G144000.3 | Wheat | nucleus | 47.01 | 24.15 |
| HORVU1Hr1G038370.1 | Barley | nucleus | 46.36 | 23.99 |
| TraesCS1B01G161400.5 | Wheat | nucleus | 47.14 | 22.87 |
| CDX92308 | Canola | nucleus | 11.69 | 9.88 |
| CDX99258 | Canola | nucleus | 11.43 | 9.7 |
| CDX77430 | Canola | nucleus | 8.18 | 9.36 |
| CDY37734 | Canola | nucleus | 8.96 | 9.13 |
| CDY23754 | Canola | cytosol | 9.09 | 9.08 |
| CDX92882 | Canola | nucleus | 12.99 | 8.86 |
| CDY51705 | Canola | nucleus | 12.86 | 8.54 |
| CDX89710 | Canola | nucleus | 9.22 | 8.22 |
| CDX84469 | Canola | cytosol, mitochondrion, nucleus, plastid | 11.95 | 8.03 |
| CDY43772 | Canola | mitochondrion | 12.08 | 8.02 |
| CDX93009 | Canola | nucleus | 9.09 | 7.22 |
| CDX94823 | Canola | nucleus | 8.96 | 7.08 |
| CDY66441 | Canola | nucleus | 9.09 | 6.78 |
| CDY47279 | Canola | nucleus | 10.26 | 5.91 |
| CDY56857 | Canola | cytosol | 9.61 | 5.85 |
| CDY10115 | Canola | nucleus | 10.39 | 5.8 |
| CDX92463 | Canola | nucleus | 9.48 | 5.77 |
| CDY32510 | Canola | mitochondrion, nucleus | 11.69 | 5.6 |
| CDY37413 | Canola | mitochondrion, nucleus | 11.56 | 5.56 |
| CDX73492 | Canola | mitochondrion | 13.77 | 5.09 |
| CDY13196 | Canola | cytosol, nucleus, plastid | 2.08 | 4.08 |
| CDX78225 | Canola | mitochondrion | 8.18 | 3.12 |
| CDY16534 | Canola | nucleus | 1.43 | 2.52 |
| CDY67491 | Canola | cytosol | 0.26 | 1.27 |
| CDY59589 | Canola | nucleus | 0.0 | 0.0 |
| CDY29038 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY22674 | EnsemblPlantsGene:GSBRNA2T00019345001 | Gene3D:3.40.50.300 | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:P-loop_NTPase |
| ncoils:Coil | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF843 | PFAM:PF00271 | PFscan:PS51194 | ProteinID:CDY22674 |
| ProteinID:CDY22674.1 | SEG:seg | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EE864A | UniProt:A0A078GBF4 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC08g43080DBnaC08g43080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBF4]
Coordinates
chrLK032134:-:418599..423221
Molecular Weight (calculated)
88371.4 Da
IEP (calculated)
4.603
GRAVY (calculated)
-0.784
Length
770 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAREENEDP MEMQDDQQME ENNNQDEEMQ DVDTRSESCV SLSDDEEQLL MGHDDELDLE KPLSEEEINE LISDLVGVES KAAEAQKAIE EESLAKVEGE
101: VREKLARTLR GVELDKSVSA EMTTFKDVWE ETLDNLEVES ANLLEQLDGA GVELPKLYKM IESQAPSRCH TEFWKKRTHW VGTQVTEETV ESLANAETFL
201: HTHRPVRKRH GILLEEGASG FLEKKFADDG VKESLAGPSE LDWSSLNKVF TEKKDEAVSF GSKNWASVYS ASTPQQAAAM GFEFPGVNEV EEIEEIDAVL
301: EGTFFADAME NERELALAEE QKKNYKRVRE DDDINIDRQL RLHLNRKRRK TRSKQVIRHE AENSDDESAC LYENNTVPNR ASIVGIPDDA SSDEHIDCNM
401: VVGEKQRTMS GLQDEVDGYL HEDWWVDSLD KTNYKDSDYS GKMILLLDIL TMCADVGDKA LVFSQSIPTL DLIELYLSRL PRNGKQGKFW KKGKDWYRID
501: GKTVSSERQK LVDRFNEPEN KRVKCTLIST RAESLGINLY AANRVIIVDG SWNPTYDLQA IYGAWRYGQK KPVFAYRLMA RGTIEEKIYK PQVTKEGRAA
601: RVVDRQQVHR NISKEEMLHL FEFDEAEDSQ NTSQKVGCCS DKMMENLLQR HNPNLHEHET LLKENEEEKL TKEEKDKAWE VYRRAFEWEG VQRVAPELQK
701: PLPSPQTVPP RLPKRFNRSR FVIPNCTRTA HQRTFIAQGR KVDSSTVCGE CGLVLTWEDV TTPAPKIDYF
101: VREKLARTLR GVELDKSVSA EMTTFKDVWE ETLDNLEVES ANLLEQLDGA GVELPKLYKM IESQAPSRCH TEFWKKRTHW VGTQVTEETV ESLANAETFL
201: HTHRPVRKRH GILLEEGASG FLEKKFADDG VKESLAGPSE LDWSSLNKVF TEKKDEAVSF GSKNWASVYS ASTPQQAAAM GFEFPGVNEV EEIEEIDAVL
301: EGTFFADAME NERELALAEE QKKNYKRVRE DDDINIDRQL RLHLNRKRRK TRSKQVIRHE AENSDDESAC LYENNTVPNR ASIVGIPDDA SSDEHIDCNM
401: VVGEKQRTMS GLQDEVDGYL HEDWWVDSLD KTNYKDSDYS GKMILLLDIL TMCADVGDKA LVFSQSIPTL DLIELYLSRL PRNGKQGKFW KKGKDWYRID
501: GKTVSSERQK LVDRFNEPEN KRVKCTLIST RAESLGINLY AANRVIIVDG SWNPTYDLQA IYGAWRYGQK KPVFAYRLMA RGTIEEKIYK PQVTKEGRAA
601: RVVDRQQVHR NISKEEMLHL FEFDEAEDSQ NTSQKVGCCS DKMMENLLQR HNPNLHEHET LLKENEEEKL TKEEKDKAWE VYRRAFEWEG VQRVAPELQK
701: PLPSPQTVPP RLPKRFNRSR FVIPNCTRTA HQRTFIAQGR KVDSSTVCGE CGLVLTWEDV TTPAPKIDYF
0001: MEANEESLKG KIEKLEGKEV IVESKEDEMD IIIEENREAE QEVMEVKARD GRGEQNDVLM EENNNQGEQK DEEMQDASSR SESSDFNSDE DEQILSRRDD
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRE RRFDLLTKWR KKGGVFLMGY TNFRNLSLGR GVKDLNAARG ICNALRDGPD ILVCDEAHII KNTKADTTQA LKQVKCQRRI
0901: ALTGSPLQNN LMEYYCMVDF VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEQLKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR
1001: ILYQRFLELY GFSDGRTDER MRKNFFAAYQ VLAQILNHPG IPQLRSEDSK NGRRGSIVDI PDDCSSDENI DYNMVTGEKQ RTMNDLQDKV DGYLQKDWWV
1101: DLLQKNNYKV SDFSGKMILL LDILSMSADV GDKALVFSQS IPTLDLIELY LSRVPRHGKQ GKFWKKGKDW YRIDGKTESS ERQKLVDRFN EPDNKRVKCT
1201: LISTRAGSLG INLYAANRVI IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVTKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD
1301: DEKSEAVTEI SKQNEAGHSN LVEQAILWTK KATLSRVGGD KLMENLLQRH GPNWISSFHE HETLLQENEE ERLTKEEKDM AWEVYRRALE WEEVQRVPFS
1401: ESPVVPKPSP STQTEPLPQP KGFNRSRFVN RNCTRIAHQL TLISQGLKVG SSTVCGECGR VIRWEDVIPA SKLSAVIVN
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRE RRFDLLTKWR KKGGVFLMGY TNFRNLSLGR GVKDLNAARG ICNALRDGPD ILVCDEAHII KNTKADTTQA LKQVKCQRRI
0901: ALTGSPLQNN LMEYYCMVDF VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEQLKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR
1001: ILYQRFLELY GFSDGRTDER MRKNFFAAYQ VLAQILNHPG IPQLRSEDSK NGRRGSIVDI PDDCSSDENI DYNMVTGEKQ RTMNDLQDKV DGYLQKDWWV
1101: DLLQKNNYKV SDFSGKMILL LDILSMSADV GDKALVFSQS IPTLDLIELY LSRVPRHGKQ GKFWKKGKDW YRIDGKTESS ERQKLVDRFN EPDNKRVKCT
1201: LISTRAGSLG INLYAANRVI IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVTKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD
1301: DEKSEAVTEI SKQNEAGHSN LVEQAILWTK KATLSRVGGD KLMENLLQRH GPNWISSFHE HETLLQENEE ERLTKEEKDM AWEVYRRALE WEEVQRVPFS
1401: ESPVVPKPSP STQTEPLPQP KGFNRSRFVN RNCTRIAHQL TLISQGLKVG SSTVCGECGR VIRWEDVIPA SKLSAVIVN
Arabidopsis Description
ATRXCHR20 [Source:UniProtKB/TrEMBL;Acc:A0A178VZQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.