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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra024192.1-P Field mustard nucleus 98.05 95.35
CDY51705 Canola nucleus 97.79 95.25
KRH32203 Soybean cytosol, mitochondrion, nucleus 19.93 81.52
AT2G18760.3 Thale cress nucleus 87.07 78.89
Os01t0102800-01 Rice cytosol, nucleus, plastid 54.38 66.96
VIT_07s0005g03670.t01 Wine grape nucleus 69.62 64.06
KRH19578 Soybean nucleus 68.56 63.18
PGSC0003DMT400026641 Potato nucleus 67.58 62.9
Solyc09g066480.2.1 Tomato nucleus 67.23 62.57
GSMUA_AchrUn_... Banana cytosol 60.23 61.43
EES02658 Sorghum nucleus 65.1 60.84
HORVU3Hr1G014660.2 Barley nucleus 64.04 59.26
TraesCS3D01G082200.2 Wheat nucleus 63.86 59.05
TraesCS3A01G081900.1 Wheat nucleus 63.95 58.51
Zm00001d040203_P003 Maize cytosol 63.51 57.04
TraesCS3B01G097000.1 Wheat nucleus 63.86 56.46
CDX78226 Canola cytosol 4.96 30.27
CDX84469 Canola cytosol, mitochondrion, nucleus, plastid 22.05 21.73
CDY43772 Canola mitochondrion 21.97 21.38
CDX92308 Canola nucleus 16.74 20.75
CDX99258 Canola nucleus 16.65 20.73
CDX77430 Canola nucleus 10.81 18.13
CDY59589 Canola nucleus 2.75 17.61
CDY29038 Canola nucleus 2.66 17.05
CDX95047 Canola nucleus 19.22 14.66
CDX93550 Canola nucleus 19.13 14.47
CDX93009 Canola nucleus 11.87 13.81
CDY37734 Canola nucleus 9.21 13.76
CDY23754 Canola cytosol 9.39 13.75
CDX94823 Canola nucleus 11.69 13.55
CDY66441 Canola nucleus 11.96 13.07
CDY22674 Canola nucleus 8.86 12.99
CDY37413 Canola mitochondrion, nucleus 18.42 12.98
CDX89710 Canola nucleus 9.83 12.85
CDY32510 Canola mitochondrion, nucleus 18.25 12.83
CDY67491 Canola cytosol 1.77 12.66
CDY56857 Canola cytosol 12.4 11.07
CDX92463 Canola nucleus 12.22 10.91
CDX73492 Canola mitochondrion 19.57 10.62
CDY47279 Canola nucleus 11.96 10.1
CDY10115 Canola nucleus 12.05 9.86
CDY16534 Canola nucleus 3.37 8.72
CDX78225 Canola mitochondrion 14.97 8.37
CDY06321 Canola nucleus 2.75 5.33
CDY13196 Canola cytosol, nucleus, plastid 0.71 2.04
Protein Annotations
MapMan:12.4.1.4.3MapMan:14.6.2.2Gene3D:3.40.50.10810Gene3D:3.40.50.300GO:A0A078DVH2EnsemblPlants:CDX92882
ProteinID:CDX92882ProteinID:CDX92882.1ncoils:CoilGO:GO:0000166GO:GO:0003674GO:GO:0005488
GO:GO:0005524EnsemblPlantsGene:GSBRNA2T00154722001InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001
InterPro:IPR038718InterPro:P-loop_NTPasePFAM:PF00176PFAM:PF00271PFscan:PS51192PFscan:PS51194
PANTHER:PTHR10799PANTHER:PTHR10799:SF837SMART:SM00487SMART:SM00490InterPro:SNF2-like_sfInterPro:SNF2_N
SUPFAM:SSF52540UniParc:UPI0004EDE684SEG:seg:::
Description
BnaC07g41400D
Coordinates
chrLK031873:-:1320002..1324489
Molecular Weight (calculated)
126473.0 Da
IEP (calculated)
6.564
GRAVY (calculated)
-0.592
Length
1129 amino acids
Sequence
(BLAST)
0001: MEEEEDRFLS SLGVTSANPA DIEQTILDEA TKKLDNDESV EERLEGTNLL PPSQSELLNK LRAVKFEIDA VASTVEQAEE EDGLQSGSVL QNALAKDRLR
0101: SLGKRKNELE KELSGLHGQG GTSGGADRGD MQRDLVKGEP SLKRKLKEVR KPSKREGKKV KVVSFHEDTD FDAVFDAASA GFVETERDEL VRKGILTPFH
0201: KLEGFERRLQ QPGPSNSRNL PEGEDDNEDS SSIDRAVQSM SLAAKARPTT KLLDAQDLPK LEPTPVPFRR LRKLYKTNDS SDSDAKKSEG GKGKKKRPLP
0301: KRKWTKRISN EDSSLQENED GRRISATSSC EEEELDDFDE VDDSEKSFVP LEGGLNIPEG IFIKLFDYQR VGVQWLWELH CQKAGGIIGD EMGLGKTVQV
0401: LSFLGSLHFS KMYKPSIVIC PVTLLRQWRR EARTCEVSVD GDHEQKSKNT KKWSSLINRV LNSDSGLLIT TYEQLRLHGE KLLNIEWGYA VLDEGHRIRN
0501: PNAEITLVCK QLQTVHRIIM TGAPIQNKLT ELWSLFDFVF PGKLGVLPVF EAEFSVPITV GGYANASPLQ VSTAYRCAVV LRDLIMPYLL RRMKADVNAH
0601: LTKKTEHVLF CSLTVEQRST YRAFLASSEV EDIFDGNKNS LYGIDVMRKI CNHPDLLERE HSHQNPDYGN PERSGKMKVV AEVLKVWKQQ GHRVLLFSQT
0701: QQMLDILESF LVANEYSYRR MDGLTPVKQR MALIDEFNNS DDVFVFVLTT KVGGLGTNLT GANRVIIFDP DWNPSNDMQA RERAWRIGQK KDVTVYRLIT
0801: RGTIEEKVYH RQIYKHFLTN RILKNPQQRR FFKARDMKDL FILNDDGDSN ASTETSNIFS QLSEDINIVG AQTENTSTTD STTQLDTHDA AEELSGEKDA
0901: ETNGEPVDEE TNILKSLFDA HGIHSAVNHD AIINANDEEE KMRLEHQASQ VAQRAAEALR QSRMLRSRES ISVPTWTGRS GCAGAPSSVR RRFGSTVNSR
1001: LTTADKSSTV KNGISAGLSS GKAPSSAELL NKIRGSREQA IGVGLEQTQS SSSSSSRVGS LQPEVLIRQI CSFVQRKGGS TDTSSIVNHF SDRVLAKDVP
1101: LFKSLLKEIA TLRKDPNGSV WVLKPEYKD
Best Arabidopsis Sequence Match ( AT2G18760.4 )
(BLAST)
0001: MEEDEDQFLL SSLGVTSANP EDLEQKILDE ATKKPDNDEG GSVEEKSTQL EGTNLLSSSQ NELLNKLRAV KFEIDAVAST VENVDEIAAE KGLKKDDESD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSSC EEEELDDFDD ADDNERSSVQ LEGGLNIPEC IFRKLFDYQR VGVQWLWELH
0401: CQRAGGIIGD EMGLGKTIQV LSFLGSLHFS KMYKPSIIIC PVTLLRQWRR EAQKWYPDFH VEILHDSAQD SGHGKGQGKA SESDYDSESS VDSDHEPKSK
0501: NTKKWDSLLN RVLNSESGLL ITTYEQLRLQ GEKLLNIEWG YAVLDEGHRI RNPNSDITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP
0601: VFEAEFSVPI TVGGYANASP LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEQIFDGNR NSLYGIDVMR
0701: KICNHPDLLE REHSHQNPDY GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSEDMFVFVL
0801: TTKVGGLGTN LTGANRVIIF DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNKILKNPQQ RRFFKARDMK DLFILKDDGD
0901: SNASTETSNI FSQLAEEINI VGVQSDKKPE SDTQLALHKT AEGSSEQTDV EMTDKTGEAM DEETNILKSL FDAHGIHSAV NHDAIMNAND EEEKMRLEHQ
1001: ASQVAQRAAE ALRQSRMLRS RESISVPTWT GRSGCAGAPS SVRRRFGSTV NSRLTQTGDK PSAIKNGISA GLSSGKAPSS AELLNRIRGS REQAIGVGLE
1101: QPQSSFPSSS GSSSRVGSLQ PEVLIRKICS FVQQKGGSAD TTSIVNHFRD IVSFNDKQLF KNLLKEIATL EKDQNRSFWV LKSEYKD
Arabidopsis Description
CHR8chromatin remodeling 8 [Source:TAIR;Acc:AT2G18760]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.