Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra024192.1-P | Field mustard | nucleus | 98.05 | 95.35 |
CDY51705 | Canola | nucleus | 97.79 | 95.25 |
KRH32203 | Soybean | cytosol, mitochondrion, nucleus | 19.93 | 81.52 |
AT2G18760.3 | Thale cress | nucleus | 87.07 | 78.89 |
Os01t0102800-01 | Rice | cytosol, nucleus, plastid | 54.38 | 66.96 |
VIT_07s0005g03670.t01 | Wine grape | nucleus | 69.62 | 64.06 |
KRH19578 | Soybean | nucleus | 68.56 | 63.18 |
PGSC0003DMT400026641 | Potato | nucleus | 67.58 | 62.9 |
Solyc09g066480.2.1 | Tomato | nucleus | 67.23 | 62.57 |
GSMUA_AchrUn_... | Banana | cytosol | 60.23 | 61.43 |
EES02658 | Sorghum | nucleus | 65.1 | 60.84 |
HORVU3Hr1G014660.2 | Barley | nucleus | 64.04 | 59.26 |
TraesCS3D01G082200.2 | Wheat | nucleus | 63.86 | 59.05 |
TraesCS3A01G081900.1 | Wheat | nucleus | 63.95 | 58.51 |
Zm00001d040203_P003 | Maize | cytosol | 63.51 | 57.04 |
TraesCS3B01G097000.1 | Wheat | nucleus | 63.86 | 56.46 |
CDX78226 | Canola | cytosol | 4.96 | 30.27 |
CDX84469 | Canola | cytosol, mitochondrion, nucleus, plastid | 22.05 | 21.73 |
CDY43772 | Canola | mitochondrion | 21.97 | 21.38 |
CDX92308 | Canola | nucleus | 16.74 | 20.75 |
CDX99258 | Canola | nucleus | 16.65 | 20.73 |
CDX77430 | Canola | nucleus | 10.81 | 18.13 |
CDY59589 | Canola | nucleus | 2.75 | 17.61 |
CDY29038 | Canola | nucleus | 2.66 | 17.05 |
CDX95047 | Canola | nucleus | 19.22 | 14.66 |
CDX93550 | Canola | nucleus | 19.13 | 14.47 |
CDX93009 | Canola | nucleus | 11.87 | 13.81 |
CDY37734 | Canola | nucleus | 9.21 | 13.76 |
CDY23754 | Canola | cytosol | 9.39 | 13.75 |
CDX94823 | Canola | nucleus | 11.69 | 13.55 |
CDY66441 | Canola | nucleus | 11.96 | 13.07 |
CDY22674 | Canola | nucleus | 8.86 | 12.99 |
CDY37413 | Canola | mitochondrion, nucleus | 18.42 | 12.98 |
CDX89710 | Canola | nucleus | 9.83 | 12.85 |
CDY32510 | Canola | mitochondrion, nucleus | 18.25 | 12.83 |
CDY67491 | Canola | cytosol | 1.77 | 12.66 |
CDY56857 | Canola | cytosol | 12.4 | 11.07 |
CDX92463 | Canola | nucleus | 12.22 | 10.91 |
CDX73492 | Canola | mitochondrion | 19.57 | 10.62 |
CDY47279 | Canola | nucleus | 11.96 | 10.1 |
CDY10115 | Canola | nucleus | 12.05 | 9.86 |
CDY16534 | Canola | nucleus | 3.37 | 8.72 |
CDX78225 | Canola | mitochondrion | 14.97 | 8.37 |
CDY06321 | Canola | nucleus | 2.75 | 5.33 |
CDY13196 | Canola | cytosol, nucleus, plastid | 0.71 | 2.04 |
Protein Annotations
MapMan:12.4.1.4.3 | MapMan:14.6.2.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:A0A078DVH2 | EnsemblPlants:CDX92882 |
ProteinID:CDX92882 | ProteinID:CDX92882.1 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00154722001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
PANTHER:PTHR10799 | PANTHER:PTHR10799:SF837 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N |
SUPFAM:SSF52540 | UniParc:UPI0004EDE684 | SEG:seg | : | : | : |
Description
BnaC07g41400D
Coordinates
chrLK031873:-:1320002..1324489
Molecular Weight (calculated)
126473.0 Da
IEP (calculated)
6.564
GRAVY (calculated)
-0.592
Length
1129 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEEEDRFLS SLGVTSANPA DIEQTILDEA TKKLDNDESV EERLEGTNLL PPSQSELLNK LRAVKFEIDA VASTVEQAEE EDGLQSGSVL QNALAKDRLR
0101: SLGKRKNELE KELSGLHGQG GTSGGADRGD MQRDLVKGEP SLKRKLKEVR KPSKREGKKV KVVSFHEDTD FDAVFDAASA GFVETERDEL VRKGILTPFH
0201: KLEGFERRLQ QPGPSNSRNL PEGEDDNEDS SSIDRAVQSM SLAAKARPTT KLLDAQDLPK LEPTPVPFRR LRKLYKTNDS SDSDAKKSEG GKGKKKRPLP
0301: KRKWTKRISN EDSSLQENED GRRISATSSC EEEELDDFDE VDDSEKSFVP LEGGLNIPEG IFIKLFDYQR VGVQWLWELH CQKAGGIIGD EMGLGKTVQV
0401: LSFLGSLHFS KMYKPSIVIC PVTLLRQWRR EARTCEVSVD GDHEQKSKNT KKWSSLINRV LNSDSGLLIT TYEQLRLHGE KLLNIEWGYA VLDEGHRIRN
0501: PNAEITLVCK QLQTVHRIIM TGAPIQNKLT ELWSLFDFVF PGKLGVLPVF EAEFSVPITV GGYANASPLQ VSTAYRCAVV LRDLIMPYLL RRMKADVNAH
0601: LTKKTEHVLF CSLTVEQRST YRAFLASSEV EDIFDGNKNS LYGIDVMRKI CNHPDLLERE HSHQNPDYGN PERSGKMKVV AEVLKVWKQQ GHRVLLFSQT
0701: QQMLDILESF LVANEYSYRR MDGLTPVKQR MALIDEFNNS DDVFVFVLTT KVGGLGTNLT GANRVIIFDP DWNPSNDMQA RERAWRIGQK KDVTVYRLIT
0801: RGTIEEKVYH RQIYKHFLTN RILKNPQQRR FFKARDMKDL FILNDDGDSN ASTETSNIFS QLSEDINIVG AQTENTSTTD STTQLDTHDA AEELSGEKDA
0901: ETNGEPVDEE TNILKSLFDA HGIHSAVNHD AIINANDEEE KMRLEHQASQ VAQRAAEALR QSRMLRSRES ISVPTWTGRS GCAGAPSSVR RRFGSTVNSR
1001: LTTADKSSTV KNGISAGLSS GKAPSSAELL NKIRGSREQA IGVGLEQTQS SSSSSSRVGS LQPEVLIRQI CSFVQRKGGS TDTSSIVNHF SDRVLAKDVP
1101: LFKSLLKEIA TLRKDPNGSV WVLKPEYKD
0101: SLGKRKNELE KELSGLHGQG GTSGGADRGD MQRDLVKGEP SLKRKLKEVR KPSKREGKKV KVVSFHEDTD FDAVFDAASA GFVETERDEL VRKGILTPFH
0201: KLEGFERRLQ QPGPSNSRNL PEGEDDNEDS SSIDRAVQSM SLAAKARPTT KLLDAQDLPK LEPTPVPFRR LRKLYKTNDS SDSDAKKSEG GKGKKKRPLP
0301: KRKWTKRISN EDSSLQENED GRRISATSSC EEEELDDFDE VDDSEKSFVP LEGGLNIPEG IFIKLFDYQR VGVQWLWELH CQKAGGIIGD EMGLGKTVQV
0401: LSFLGSLHFS KMYKPSIVIC PVTLLRQWRR EARTCEVSVD GDHEQKSKNT KKWSSLINRV LNSDSGLLIT TYEQLRLHGE KLLNIEWGYA VLDEGHRIRN
0501: PNAEITLVCK QLQTVHRIIM TGAPIQNKLT ELWSLFDFVF PGKLGVLPVF EAEFSVPITV GGYANASPLQ VSTAYRCAVV LRDLIMPYLL RRMKADVNAH
0601: LTKKTEHVLF CSLTVEQRST YRAFLASSEV EDIFDGNKNS LYGIDVMRKI CNHPDLLERE HSHQNPDYGN PERSGKMKVV AEVLKVWKQQ GHRVLLFSQT
0701: QQMLDILESF LVANEYSYRR MDGLTPVKQR MALIDEFNNS DDVFVFVLTT KVGGLGTNLT GANRVIIFDP DWNPSNDMQA RERAWRIGQK KDVTVYRLIT
0801: RGTIEEKVYH RQIYKHFLTN RILKNPQQRR FFKARDMKDL FILNDDGDSN ASTETSNIFS QLSEDINIVG AQTENTSTTD STTQLDTHDA AEELSGEKDA
0901: ETNGEPVDEE TNILKSLFDA HGIHSAVNHD AIINANDEEE KMRLEHQASQ VAQRAAEALR QSRMLRSRES ISVPTWTGRS GCAGAPSSVR RRFGSTVNSR
1001: LTTADKSSTV KNGISAGLSS GKAPSSAELL NKIRGSREQA IGVGLEQTQS SSSSSSRVGS LQPEVLIRQI CSFVQRKGGS TDTSSIVNHF SDRVLAKDVP
1101: LFKSLLKEIA TLRKDPNGSV WVLKPEYKD
0001: MEEDEDQFLL SSLGVTSANP EDLEQKILDE ATKKPDNDEG GSVEEKSTQL EGTNLLSSSQ NELLNKLRAV KFEIDAVAST VENVDEIAAE KGLKKDDESD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSSC EEEELDDFDD ADDNERSSVQ LEGGLNIPEC IFRKLFDYQR VGVQWLWELH
0401: CQRAGGIIGD EMGLGKTIQV LSFLGSLHFS KMYKPSIIIC PVTLLRQWRR EAQKWYPDFH VEILHDSAQD SGHGKGQGKA SESDYDSESS VDSDHEPKSK
0501: NTKKWDSLLN RVLNSESGLL ITTYEQLRLQ GEKLLNIEWG YAVLDEGHRI RNPNSDITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP
0601: VFEAEFSVPI TVGGYANASP LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEQIFDGNR NSLYGIDVMR
0701: KICNHPDLLE REHSHQNPDY GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSEDMFVFVL
0801: TTKVGGLGTN LTGANRVIIF DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNKILKNPQQ RRFFKARDMK DLFILKDDGD
0901: SNASTETSNI FSQLAEEINI VGVQSDKKPE SDTQLALHKT AEGSSEQTDV EMTDKTGEAM DEETNILKSL FDAHGIHSAV NHDAIMNAND EEEKMRLEHQ
1001: ASQVAQRAAE ALRQSRMLRS RESISVPTWT GRSGCAGAPS SVRRRFGSTV NSRLTQTGDK PSAIKNGISA GLSSGKAPSS AELLNRIRGS REQAIGVGLE
1101: QPQSSFPSSS GSSSRVGSLQ PEVLIRKICS FVQQKGGSAD TTSIVNHFRD IVSFNDKQLF KNLLKEIATL EKDQNRSFWV LKSEYKD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSSC EEEELDDFDD ADDNERSSVQ LEGGLNIPEC IFRKLFDYQR VGVQWLWELH
0401: CQRAGGIIGD EMGLGKTIQV LSFLGSLHFS KMYKPSIIIC PVTLLRQWRR EAQKWYPDFH VEILHDSAQD SGHGKGQGKA SESDYDSESS VDSDHEPKSK
0501: NTKKWDSLLN RVLNSESGLL ITTYEQLRLQ GEKLLNIEWG YAVLDEGHRI RNPNSDITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP
0601: VFEAEFSVPI TVGGYANASP LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEQIFDGNR NSLYGIDVMR
0701: KICNHPDLLE REHSHQNPDY GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSEDMFVFVL
0801: TTKVGGLGTN LTGANRVIIF DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNKILKNPQQ RRFFKARDMK DLFILKDDGD
0901: SNASTETSNI FSQLAEEINI VGVQSDKKPE SDTQLALHKT AEGSSEQTDV EMTDKTGEAM DEETNILKSL FDAHGIHSAV NHDAIMNAND EEEKMRLEHQ
1001: ASQVAQRAAE ALRQSRMLRS RESISVPTWT GRSGCAGAPS SVRRRFGSTV NSRLTQTGDK PSAIKNGISA GLSSGKAPSS AELLNRIRGS REQAIGVGLE
1101: QPQSSFPSSS GSSSRVGSLQ PEVLIRKICS FVQQKGGSAD TTSIVNHFRD IVSFNDKQLF KNLLKEIATL EKDQNRSFWV LKSEYKD
Arabidopsis Description
CHR8chromatin remodeling 8 [Source:TAIR;Acc:AT2G18760]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.