Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G082200.2 | Wheat | nucleus | 96.35 | 97.38 |
| HORVU3Hr1G014660.2 | Barley | nucleus | 94.89 | 95.98 |
| TraesCS3B01G097000.1 | Wheat | nucleus | 96.35 | 93.11 |
| Os01t0102800-01 | Rice | cytosol, nucleus, plastid | 63.7 | 85.71 |
| KRH32203 | Soybean | cytosol, mitochondrion, nucleus | 18.64 | 83.33 |
| EES02658 | Sorghum | nucleus | 79.66 | 81.37 |
| Zm00001d040203_P003 | Maize | cytosol | 78.85 | 77.41 |
| GSMUA_AchrUn_... | Banana | cytosol | 58.59 | 65.31 |
| CDX92882 | Canola | nucleus | 58.51 | 63.95 |
| Bra024192.1-P | Field mustard | nucleus | 59.89 | 63.65 |
| CDY51705 | Canola | nucleus | 59.72 | 63.59 |
| VIT_07s0005g03670.t01 | Wine grape | nucleus | 62.16 | 62.51 |
| PGSC0003DMT400026641 | Potato | nucleus | 60.53 | 61.58 |
| KRH19578 | Soybean | nucleus | 60.62 | 61.06 |
| Solyc09g066480.2.1 | Tomato | nucleus | 59.97 | 61.01 |
| AT2G18760.3 | Thale cress | nucleus | 60.45 | 59.87 |
| TraesCS3A01G015600.1 | Wheat | endoplasmic reticulum, golgi | 16.05 | 32.78 |
| TraesCS2A01G185300.1 | Wheat | plastid | 16.86 | 23.99 |
| TraesCS2A01G561600.1 | Wheat | mitochondrion | 19.21 | 22.17 |
| TraesCS6A01G321200.1 | Wheat | nucleus | 16.05 | 20.35 |
| TraesCS3A01G220700.1 | Wheat | nucleus | 12.97 | 15.15 |
| TraesCS1A01G144000.3 | Wheat | nucleus | 18.31 | 15.08 |
| TraesCS3A01G238800.1 | Wheat | nucleus | 12.8 | 14.95 |
| TraesCS5A01G340400.1 | Wheat | nucleus | 9.97 | 12.84 |
| TraesCS2A01G140400.2 | Wheat | cytosol | 9.81 | 12.66 |
| TraesCS2A01G182200.1 | Wheat | plastid | 10.29 | 12.22 |
| TraesCS6A01G241100.1 | Wheat | nucleus | 11.26 | 12.2 |
| TraesCS4A01G022800.1 | Wheat | mitochondrion, plastid | 9.56 | 11.85 |
| TraesCS2A01G089500.1 | Wheat | plastid | 11.51 | 11.26 |
| TraesCS1A01G442400.2 | Wheat | mitochondrion | 17.67 | 10.54 |
| TraesCS1A01G245700.1 | Wheat | mitochondrion, nucleus | 12.64 | 10.48 |
Protein Annotations
| MapMan:12.4.1.4.3 | MapMan:14.6.2.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF837 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf |
| InterPro:SNF2_N | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS3A01G081900 | EnsemblPlants:TraesCS3A01G081900.1 | TIGR:cd00046 | TIGR:cd00079 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:53182804..53188067
Molecular Weight (calculated)
136448.0 Da
IEP (calculated)
7.460
GRAVY (calculated)
-0.606
Length
1234 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEEDDDQRL LHSLGVTSAN IDDIERKILS QAKTDPQKGD TEASGLTAVG DQENKLTTLQ DDAQAKLHQQ LRSVQLEIDA VASTLGGAKQ AAGKKSGGGS
0101: SGSTDAEDKK KKKKEKVKEE ENAEEDAPRG GALQQALAAE RLRSLKRAKV QIQKEILQSG PGPSGSGNQK DKMLAMLVED ELRRKKSLKP PGGPKKKSPT
0201: RRMKTVTYDD DDDFDAVLDG ASAGFMETER EELIRKGLLT PFHKLKGFEK RVESPGTPSR QNDSAEQAEE TMEASSIAKV AQAMQNMAQS RPTTKLLDAE
0301: FLPKLDAPTA PFQRLGVPLK RPGLPSSDER KNKRLKSKTK RPLPGKKWMK ANSKKESLLD VADEDVGDAA ASASVADEDV GDAAASASVS ENEDEVIEGS
0401: DGLPPVILEG GLRIPGSVYT QLFDYQKVGV QWLWELHCQR AGGIIGDEMG LGKTVQVLSF LGALHDSGMY KPSIVICPVT LLQQWRREAS KWYPKFKVEI
0501: LHDSANSSSK KGKRYSDSES DVSWDSDQEE VTRTKPAQKW DDLISRVVNS GSGLLLTTYE QLRIIREKLL DVEWGYAVLD EGHRIRNPNA EVTLVCKQLQ
0601: TVHRIIMTGA PIQNKLSELW SLFDFVFPGK LGVLPVFETE FSVPITVGGY ANATPLQVST AYRCAVVLRD LIMPYLLRRM KADVNAQLPK KTEQVLFCSL
0701: TQEQRATYRA FLASSEVEQI FDGNRNSLYG IDVLRKICNH PDLLEREQAA QNPDYGNIER SGKMKVVEQV LKVWKDQGHR VLLFAQTQQM LDILENFLTA
0801: RDYQYRRMDG LTPPKQRMAL IDEFNNTNEI FIFILTTKVG GLGTNLTGAN RVIIFDPDWN PSTDMQARER AWRIGQKRDV TVYRLITRGT IEEKVYHRQI
0901: YKHFLTNKVL KNPQQRRFFK ARDMKDLFTL QDDDKNGSTE TSNIFGQLSE DVNIGAPDGE ERGERSSALP TSAEAEPSVD GDGKSDLRSD QADEESNILK
1001: SLFDGQGVHS AINHDAIMSA NDDQKLRLEA EASQVAQRAA EALRQSRMLR SRDDFAVPTW TGRAGAAGAP SSVRRKFGST LNTQLVSSSQ PSEGSSSSRV
1101: QSLQVGALHG KALSSAELLA KMRGTREGAA SDALEHQLSL GSASNQRPGS TENGRSSNSS SSRNMIVQPE VLIRQLCTFI QRNGGSASST SLTEHFKNRI
1201: QPKDMLVFKN LLKEIATLQR GAGGATWVLK PEYG
0101: SGSTDAEDKK KKKKEKVKEE ENAEEDAPRG GALQQALAAE RLRSLKRAKV QIQKEILQSG PGPSGSGNQK DKMLAMLVED ELRRKKSLKP PGGPKKKSPT
0201: RRMKTVTYDD DDDFDAVLDG ASAGFMETER EELIRKGLLT PFHKLKGFEK RVESPGTPSR QNDSAEQAEE TMEASSIAKV AQAMQNMAQS RPTTKLLDAE
0301: FLPKLDAPTA PFQRLGVPLK RPGLPSSDER KNKRLKSKTK RPLPGKKWMK ANSKKESLLD VADEDVGDAA ASASVADEDV GDAAASASVS ENEDEVIEGS
0401: DGLPPVILEG GLRIPGSVYT QLFDYQKVGV QWLWELHCQR AGGIIGDEMG LGKTVQVLSF LGALHDSGMY KPSIVICPVT LLQQWRREAS KWYPKFKVEI
0501: LHDSANSSSK KGKRYSDSES DVSWDSDQEE VTRTKPAQKW DDLISRVVNS GSGLLLTTYE QLRIIREKLL DVEWGYAVLD EGHRIRNPNA EVTLVCKQLQ
0601: TVHRIIMTGA PIQNKLSELW SLFDFVFPGK LGVLPVFETE FSVPITVGGY ANATPLQVST AYRCAVVLRD LIMPYLLRRM KADVNAQLPK KTEQVLFCSL
0701: TQEQRATYRA FLASSEVEQI FDGNRNSLYG IDVLRKICNH PDLLEREQAA QNPDYGNIER SGKMKVVEQV LKVWKDQGHR VLLFAQTQQM LDILENFLTA
0801: RDYQYRRMDG LTPPKQRMAL IDEFNNTNEI FIFILTTKVG GLGTNLTGAN RVIIFDPDWN PSTDMQARER AWRIGQKRDV TVYRLITRGT IEEKVYHRQI
0901: YKHFLTNKVL KNPQQRRFFK ARDMKDLFTL QDDDKNGSTE TSNIFGQLSE DVNIGAPDGE ERGERSSALP TSAEAEPSVD GDGKSDLRSD QADEESNILK
1001: SLFDGQGVHS AINHDAIMSA NDDQKLRLEA EASQVAQRAA EALRQSRMLR SRDDFAVPTW TGRAGAAGAP SSVRRKFGST LNTQLVSSSQ PSEGSSSSRV
1101: QSLQVGALHG KALSSAELLA KMRGTREGAA SDALEHQLSL GSASNQRPGS TENGRSSNSS SSRNMIVQPE VLIRQLCTFI QRNGGSASST SLTEHFKNRI
1201: QPKDMLVFKN LLKEIATLQR GAGGATWVLK PEYG
0001: MEEDEDQFLL SSLGVTSANP EDLEQKILDE ATKKPDNDEG GSVEEKSTQL EGTNLLSSSQ NELLNKLRAV KFEIDAVAST VENVDEIAAE KGLKKDDESD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSSC EEEELDDFDD ADDNERSSVQ LEGGLNIPEC IFRKLFDYQR VGVQWLWELH
0401: CQRAGGIIGD EMGLGKTIQV LSFLGSLHFS KMYKPSIIIC PVTLLRQWRR EAQKWYPDFH VEILHDSAQD SGHGKGQGKA SESDYDSESS VDSDHEPKSK
0501: NTKKWDSLLN RVLNSESGLL ITTYEQLRLQ GEKLLNIEWG YAVLDEGHRI RNPNSDITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP
0601: VFEAEFSVPI TVGGYANASP LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEQIFDGNR NSLYGIDVMR
0701: KICNHPDLLE REHSHQNPDY GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSEDMFVFVL
0801: TTKVGGLGTN LTGANRVIIF DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNKILKNPQQ RRFFKARDMK DLFILKDDGD
0901: SNASTETSNI FSQLAEEINI VGVQSDKKPE SDTQLALHKT AEGSSEQTDV EMTDKTGEAM DEETNILKSL FDAHGIHSAV NHDAIMNAND EEEKMRLEHQ
1001: ASQVAQRAAE ALRQSRMLRS RESISVPTWT GRSGCAGAPS SVRRRFGSTV NSRLTQTGDK PSAIKNGISA GLSSGKAPSS AELLNRIRGS REQAIGVGLE
1101: QPQSSFPSSS GSSSRVGSLQ PEVLIRKICS FVQQKGGSAD TTSIVNHFRD IVSFNDKQLF KNLLKEIATL EKDQNRSFWV LKSEYKD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSSC EEEELDDFDD ADDNERSSVQ LEGGLNIPEC IFRKLFDYQR VGVQWLWELH
0401: CQRAGGIIGD EMGLGKTIQV LSFLGSLHFS KMYKPSIIIC PVTLLRQWRR EAQKWYPDFH VEILHDSAQD SGHGKGQGKA SESDYDSESS VDSDHEPKSK
0501: NTKKWDSLLN RVLNSESGLL ITTYEQLRLQ GEKLLNIEWG YAVLDEGHRI RNPNSDITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP
0601: VFEAEFSVPI TVGGYANASP LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEQIFDGNR NSLYGIDVMR
0701: KICNHPDLLE REHSHQNPDY GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSEDMFVFVL
0801: TTKVGGLGTN LTGANRVIIF DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNKILKNPQQ RRFFKARDMK DLFILKDDGD
0901: SNASTETSNI FSQLAEEINI VGVQSDKKPE SDTQLALHKT AEGSSEQTDV EMTDKTGEAM DEETNILKSL FDAHGIHSAV NHDAIMNAND EEEKMRLEHQ
1001: ASQVAQRAAE ALRQSRMLRS RESISVPTWT GRSGCAGAPS SVRRRFGSTV NSRLTQTGDK PSAIKNGISA GLSSGKAPSS AELLNRIRGS REQAIGVGLE
1101: QPQSSFPSSS GSSSRVGSLQ PEVLIRKICS FVQQKGGSAD TTSIVNHFRD IVSFNDKQLF KNLLKEIATL EKDQNRSFWV LKSEYKD
Arabidopsis Description
CHR8chromatin remodeling 8 [Source:TAIR;Acc:AT2G18760]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.