Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G245400.1 | Wheat | nucleus | 96.98 | 97.24 |
| TraesCS1B01G256700.1 | Wheat | mitochondrion, nucleus | 96.51 | 96.25 |
| Os05t0392400-01 | Rice | cytosol, nucleus | 28.34 | 93.78 |
| HORVU1Hr1G062970.3 | Barley | mitochondrion | 91.47 | 91.9 |
| Solyc08g077650.1.1 | Tomato | cytosol | 2.35 | 67.31 |
| Zm00001d038113_P001 | Maize | mitochondrion, nucleus | 63.33 | 65.71 |
| OQU77943 | Sorghum | mitochondrion | 62.59 | 63.92 |
| GSMUA_Achr7P06840_001 | Banana | nucleus | 33.71 | 53.23 |
| VIT_02s0012g00110.t01 | Wine grape | cytosol | 21.09 | 48.68 |
| PGSC0003DMT400033315 | Potato | nucleus | 4.7 | 48.28 |
| Solyc08g077590.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 5.64 | 48.28 |
| PGSC0003DMT400088837 | Potato | cytosol | 6.11 | 48.15 |
| Solyc08g077580.1.1 | Tomato | cytosol | 5.51 | 47.4 |
| Solyc03g061640.1.1 | Tomato | cytosol | 5.1 | 45.78 |
| CDX77430 | Canola | nucleus | 20.62 | 45.62 |
| Solyc01g068300.1.1 | Tomato | cytosol | 11.69 | 44.62 |
| Solyc08g077610.1.1 | Tomato | nucleus | 19.88 | 44.25 |
| CDY59589 | Canola | nucleus | 5.17 | 43.75 |
| CDY29038 | Canola | nucleus | 5.17 | 43.75 |
| Solyc04g054440.1.1 | Tomato | nucleus | 19.21 | 43.66 |
| Solyc01g068320.1.1 | Tomato | cytosol | 19.54 | 43.56 |
| PGSC0003DMT400017302 | Potato | nucleus | 18.0 | 43.02 |
| Solyc02g033050.1.1 | Tomato | nucleus | 18.07 | 42.77 |
| Solyc08g062000.1.1 | Tomato | cytosol | 11.22 | 42.71 |
| PGSC0003DMT400096321 | Potato | nucleus | 3.56 | 42.4 |
| Solyc08g061350.1.1 | Tomato | mitochondrion | 2.01 | 42.25 |
| PGSC0003DMT400090992 | Potato | mitochondrion | 6.92 | 42.04 |
| Solyc08g061410.1.1 | Tomato | cytosol | 12.29 | 41.69 |
| Solyc08g062060.1.1 | Tomato | nucleus | 2.96 | 41.51 |
| Solyc08g077690.2.1 | Tomato | nucleus | 19.81 | 39.81 |
| Solyc01g049740.1.1 | Tomato | endoplasmic reticulum, extracellular | 6.38 | 39.42 |
| Solyc01g060460.1.1 | Tomato | nucleus | 20.08 | 39.29 |
| Solyc08g061370.1.1 | Tomato | cytosol | 4.57 | 39.08 |
| Solyc08g061340.1.1 | Tomato | cytosol | 5.71 | 38.12 |
| KRH39939 | Soybean | nucleus | 15.78 | 38.09 |
| PGSC0003DMT400085993 | Potato | cytosol | 4.23 | 37.5 |
| Solyc08g077600.1.1 | Tomato | cytosol | 9.6 | 36.39 |
| Solyc08g061390.1.1 | Tomato | cytosol | 5.98 | 35.89 |
| CDX93009 | Canola | nucleus | 23.3 | 35.77 |
| TraesCS3A01G220700.1 | Wheat | nucleus | 25.25 | 35.61 |
| CDX94823 | Canola | nucleus | 23.17 | 35.42 |
| Solyc08g062070.1.1 | Tomato | cytosol | 3.16 | 35.34 |
| Solyc08g061990.1.1 | Tomato | mitochondrion | 9.13 | 35.32 |
| TraesCS3A01G238800.1 | Wheat | nucleus | 25.05 | 35.29 |
| PGSC0003DMT400004629 | Potato | nucleus | 20.89 | 34.87 |
| Bra015035.1-P | Field mustard | nucleus | 24.38 | 34.84 |
| PGSC0003DMT400004673 | Potato | nucleus | 21.42 | 34.83 |
| CDY66441 | Canola | nucleus | 24.04 | 34.66 |
| Solyc08g077670.1.1 | Tomato | cytosol | 10.21 | 33.55 |
| Bra001944.1-P | Field mustard | nucleus | 23.91 | 33.4 |
| PGSC0003DMT400085944 | Potato | cytosol | 5.17 | 32.77 |
| TraesCS6A01G241100.1 | Wheat | nucleus | 24.98 | 32.66 |
| PGSC0003DMT400004672 | Potato | nucleus | 21.69 | 32.46 |
| KRH23851 | Soybean | mitochondrion, nucleus | 24.45 | 31.22 |
| AT3G24340.1 | Thale cress | nucleus | 23.57 | 31.01 |
| KRH46527 | Soybean | nucleus | 23.57 | 30.57 |
| PGSC0003DMT400037430 | Potato | nucleus | 13.63 | 30.21 |
| PGSC0003DMT400017313 | Potato | nucleus | 23.64 | 29.21 |
| KRH46528 | Soybean | cytosol, extracellular, nucleus | 23.71 | 28.33 |
| PGSC0003DMT400038789 | Potato | nucleus | 20.42 | 27.49 |
| CDY47279 | Canola | nucleus | 24.31 | 27.08 |
| AT1G05490.1 | Thale cress | mitochondrion, nucleus | 25.59 | 27.02 |
| CDY10115 | Canola | nucleus | 24.65 | 26.61 |
| Bra015430.1-P | Field mustard | nucleus | 25.12 | 23.63 |
| TraesCS5A01G340400.1 | Wheat | nucleus | 14.64 | 22.76 |
| TraesCS2A01G182200.1 | Wheat | plastid | 14.78 | 21.17 |
| TraesCS2A01G140400.2 | Wheat | cytosol | 13.16 | 20.5 |
| TraesCS4A01G022800.1 | Wheat | mitochondrion, plastid | 13.3 | 19.88 |
| TraesCS2A01G089500.1 | Wheat | plastid | 16.19 | 19.11 |
| TraesCS3A01G015600.1 | Wheat | endoplasmic reticulum, golgi | 7.19 | 17.72 |
| TraesCS6A01G321200.1 | Wheat | nucleus | 9.13 | 13.98 |
| TraesCS2A01G185300.1 | Wheat | plastid | 8.06 | 13.84 |
| TraesCS3A01G081900.1 | Wheat | nucleus | 10.48 | 12.64 |
| TraesCS1A01G144000.3 | Wheat | nucleus | 12.63 | 12.54 |
| TraesCS2A01G561600.1 | Wheat | mitochondrion | 9.0 | 12.54 |
| TraesCS1A01G442400.2 | Wheat | mitochondrion | 11.01 | 7.93 |
Protein Annotations
| MapMan:16.10.1.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR10799 | PANTHER:PTHR10799:SF937 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N |
| SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS1A01G245700 | EnsemblPlants:TraesCS1A01G245700.1 | TIGR:cd00046 | TIGR:cd00079 | SEG:seg |
Description
No Description!
Coordinates
chr1A:+:435057160..435062441
Molecular Weight (calculated)
165948.0 Da
IEP (calculated)
5.663
GRAVY (calculated)
-0.742
Length
1489 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDRAARRRAR AGGGAPAAPS TRARRRDDAG TIVIDLDDDG AAPAAAAAAS RRSSSSSSSA AAMPVPLVGA VATRTRSRRL AMQPPAPEEA PTAKRRRKGA
0101: TSADADGGGG SKGAGSSKSE TRPNRRGRPP RASVRSKEAE AEADAPACGD WVEVSRGDGC DDSARRGDDA SDDDNGESRA DEACGIGQGS DEHHSAASGN
0201: RINQHQGSGA VNGSNSCHAM NEVVSGDAGG LKGRGNEGGG LGVGFHVDEE HMNEKDTVGC GNRELPTADA MMGDEAAASE DDFGDYYDDE MLEERLVADL
0301: IRTYSNGGNL EASNGAYGDG GDLEESEDEM GFTDDGDDDD SMHDADECGM SEPINGDAKA PTNDDAKAGT QDPVDHKVVA GEVRCHEEDE EEEDVIKDEV
0401: DTKREGPTGF NQGRSHIEIL DSDEEVKVLN DASKASKKKP LLRKKEPVVP CVAWRTRSLW GLKQDRLSYN AYFEELSDEP EEEDDSEVEL DGEDDDSADD
0501: DNSASHDSEV ELEEEDANKK AKEEEEAEMR KRKKEIASSL AKIRAGPLPL YTNTGKRIRK ATPNSCNNSK RRRRIQTHHR IDSSDDEIID HTVADGFKWE
0601: VHKKPGIQPL NFDKDGSEGP VGNDITQHQK QTHFTWDLER RKRLKLETTT KERQLFERHL DSDSSPSSSD QNKRHGDDSK TGKEKKHLSS KSGKSAKKFS
0701: RSGSKMLKRQ SLLKLLMDKM SGDKDGGFSP FDQHLQFDYN FKDPHPLVFS FGTENSTPAD IPEQNAKENM LWGDFDFALE SENIGTYYDD EHQGESNVLD
0801: LGLPSKTPCS RGKHEFIIDD QIGIRCKYCS LVNLEIRFVL PSMVSNYAEK TPWRNGSCLK EALMYHDLCE QAGSVDGQSQ DFHLYGTVWD LIPGVITSMY
0901: QHQREAFEFM WTNLVGDIRL DELKHGAKPD VVGGCVICHA PGTGKTRLAI VFIQTYMKVF PDCRPVIIAP RGMLFAWEEE FKKWDVNVPF HIMNTTDFSG
1001: KEDRDICRLI KKEHRTEKLT RLVKLLSWNK GHGILGISYG LYMKLTSEKK SGCTEGNKVR TILLENPGLL VLDEGHTPRN ERSIMWKTLG KVKTEKRIIL
1101: SGTPFQNNFL ELYNILCLVR PRFGEMFLTE KKVGRRHYVS KKRQDKFSDK YEKGVWASLT SNVTDDNAEK VRSILKPFVH IHNGTILRTL PGLRESVIVL
1201: KPPPLQKSII RKVENIGSGN NFEHEYVISL ASTHPSLVTA INMSEEEASL IDKPMLERLR SNPYEGVKTR FVIEVVRLCE ALKEKVLIFS QFIQPLELIK
1301: EHLSKLFKWR VGKEILQMDG KIQPRYRQTS IEVFNNPDSD AKVLLASTRA CCEGISLTGA SRVVLLDVVW NPAVGRQAIS RAFRIGQKKF VYTYNLITYG
1401: TGEGDKYDRQ AEKDHLSKLV FSQEDEFNNV RNMLSKAEMD HCSKLISQDK VLEEMTSHDQ LKGMFLKIHY PPTESNMVFT YNQIAPELS
0101: TSADADGGGG SKGAGSSKSE TRPNRRGRPP RASVRSKEAE AEADAPACGD WVEVSRGDGC DDSARRGDDA SDDDNGESRA DEACGIGQGS DEHHSAASGN
0201: RINQHQGSGA VNGSNSCHAM NEVVSGDAGG LKGRGNEGGG LGVGFHVDEE HMNEKDTVGC GNRELPTADA MMGDEAAASE DDFGDYYDDE MLEERLVADL
0301: IRTYSNGGNL EASNGAYGDG GDLEESEDEM GFTDDGDDDD SMHDADECGM SEPINGDAKA PTNDDAKAGT QDPVDHKVVA GEVRCHEEDE EEEDVIKDEV
0401: DTKREGPTGF NQGRSHIEIL DSDEEVKVLN DASKASKKKP LLRKKEPVVP CVAWRTRSLW GLKQDRLSYN AYFEELSDEP EEEDDSEVEL DGEDDDSADD
0501: DNSASHDSEV ELEEEDANKK AKEEEEAEMR KRKKEIASSL AKIRAGPLPL YTNTGKRIRK ATPNSCNNSK RRRRIQTHHR IDSSDDEIID HTVADGFKWE
0601: VHKKPGIQPL NFDKDGSEGP VGNDITQHQK QTHFTWDLER RKRLKLETTT KERQLFERHL DSDSSPSSSD QNKRHGDDSK TGKEKKHLSS KSGKSAKKFS
0701: RSGSKMLKRQ SLLKLLMDKM SGDKDGGFSP FDQHLQFDYN FKDPHPLVFS FGTENSTPAD IPEQNAKENM LWGDFDFALE SENIGTYYDD EHQGESNVLD
0801: LGLPSKTPCS RGKHEFIIDD QIGIRCKYCS LVNLEIRFVL PSMVSNYAEK TPWRNGSCLK EALMYHDLCE QAGSVDGQSQ DFHLYGTVWD LIPGVITSMY
0901: QHQREAFEFM WTNLVGDIRL DELKHGAKPD VVGGCVICHA PGTGKTRLAI VFIQTYMKVF PDCRPVIIAP RGMLFAWEEE FKKWDVNVPF HIMNTTDFSG
1001: KEDRDICRLI KKEHRTEKLT RLVKLLSWNK GHGILGISYG LYMKLTSEKK SGCTEGNKVR TILLENPGLL VLDEGHTPRN ERSIMWKTLG KVKTEKRIIL
1101: SGTPFQNNFL ELYNILCLVR PRFGEMFLTE KKVGRRHYVS KKRQDKFSDK YEKGVWASLT SNVTDDNAEK VRSILKPFVH IHNGTILRTL PGLRESVIVL
1201: KPPPLQKSII RKVENIGSGN NFEHEYVISL ASTHPSLVTA INMSEEEASL IDKPMLERLR SNPYEGVKTR FVIEVVRLCE ALKEKVLIFS QFIQPLELIK
1301: EHLSKLFKWR VGKEILQMDG KIQPRYRQTS IEVFNNPDSD AKVLLASTRA CCEGISLTGA SRVVLLDVVW NPAVGRQAIS RAFRIGQKKF VYTYNLITYG
1401: TGEGDKYDRQ AEKDHLSKLV FSQEDEFNNV RNMLSKAEMD HCSKLISQDK VLEEMTSHDQ LKGMFLKIHY PPTESNMVFT YNQIAPELS
0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP
Arabidopsis Description
CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.