Factsheet for PGSC0003DMT400033315

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400096321	Potato	nucleus	61.38	71.2
Solyc04g054440.1.1	Tomato	nucleus	97.24	21.53
PGSC0003DMT400017302	Potato	nucleus	91.03	21.19
Os05t0392400-01	Rice	cytosol, nucleus	48.28	15.56
PGSC0003DMT400004673	Potato	nucleus	91.03	14.41
PGSC0003DMT400004629	Potato	nucleus	87.59	14.24
VIT_02s0012g00110.t01	Wine grape	cytosol	55.86	12.56
PGSC0003DMT400038789	Potato	nucleus	86.21	11.3
PGSC0003DMT400017313	Potato	nucleus	91.03	10.95
KRH39939	Soybean	nucleus	45.52	10.7
PGSC0003DMT400085993	Potato	cytosol	10.34	8.93
GSMUA_Achr7P06840_001	Banana	nucleus	48.28	7.42
PGSC0003DMT400004672	Potato	nucleus	50.34	7.34
Os02t0650800-00	Rice	cytosol	45.52	7.04
KRH46527	Soybean	nucleus	51.03	6.45
AT3G24340.1	Thale cress	nucleus	49.66	6.36
TraesCS3B01G251000.1	Wheat	nucleus	46.21	6.31
TraesCS3A01G220700.1	Wheat	nucleus	45.52	6.25
TraesCS3A01G238800.1	Wheat	nucleus	45.52	6.24
KRH23851	Soybean	mitochondrion, nucleus	48.97	6.09
TraesCS2D01G053900.1	Wheat	nucleus	44.14	5.89
TraesCS6A01G241100.1	Wheat	nucleus	45.52	5.79
KRH46528	Soybean	cytosol, extracellular, nucleus	48.97	5.7
KXG31163	Sorghum	nucleus	46.21	5.24
TraesCS3D01G231800.1	Wheat	nucleus	45.52	5.2
PGSC0003DMT400079488	Potato	nucleus	32.41	5.08
AT1G05490.1	Thale cress	mitochondrion, nucleus	48.97	5.04
OQU77943	Sorghum	mitochondrion	47.59	4.73
TraesCS1D01G245400.1	Wheat	nucleus	48.28	4.71
TraesCS1A01G245700.1	Wheat	mitochondrion, nucleus	48.28	4.7
TraesCS1B01G256700.1	Wheat	mitochondrion, nucleus	48.28	4.69
PGSC0003DMT400076122	Potato	cytosol, nucleus, plastid	22.76	4.55
PGSC0003DMT400082782	Potato	plastid	24.83	4.05
PGSC0003DMT400061540	Potato	nucleus	35.86	4.04
PGSC0003DMT400026641	Potato	nucleus	28.28	3.38
PGSC0003DMT400085944	Potato	cytosol	3.45	2.13
HORVU3Hr1G014630.1	Barley	cytosol, nucleus, plastid	2.76	1.32
Bra031634.1-P	Field mustard	nucleus	2.76	0.69
CDY06321	Canola	nucleus	2.76	0.69
Zm00001d047708_P001	Maize	cytosol	0.69	0.58
PGSC0003DMT400090992	Potato	mitochondrion	0.0	0.0
PGSC0003DMT400088837	Potato	cytosol	0.0	0.0
PGSC0003DMT400037430	Potato	nucleus	0.0	0.0
Os02t0762600-01	Rice	cytosol	0.0	0.0
Os02t0161300-01	Rice	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400033315	EnsemblPlantsGene:PGSC0003DMG400012796	Gene3D:3.40.50.300	InterPro:Helicase_C	InterPro:IPR001650	InterPro:P-loop_NTPase
PANTHER:PTHR10799	PANTHER:PTHR10799:SF858	PFAM:PF00271	PFscan:PS51194	PGSC:PGSC0003DMG400012796	SUPFAM:SSF52540
UniParc:UPI0002965752	UniProt:M1AYY1	MapMan:35.1	:	:	:

Description

DNA repair protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012796]

Coordinates

chr4:-:52745143..52745597

Molecular Weight (calculated)

16382.7 Da

IEP (calculated)

9.162

GRAVY (calculated)

-0.411

Length

145 amino acids

Sequence
(BLAST)

001: MDGKLDVKQR QISINSLNDP NSDVKVLLAS IKACSEGISL IGASRVVLLD VLWNPSVQQQ AISRAYRNGQ TKVVHVYNPV ISKWEVDKIE QQTRKKYHSD
101: VLLSRNEVKM DTSRSVSEDN ILESMVKHEG LRHIFEKLSH APCTT

Best Arabidopsis Sequence Match ( AT3G24340.1 )
(BLAST)

0001: MDMTSCVARR TRSRTESYLN SILNKSKGIS GEEEDQSLGC VNSRTEKRRV NMRDACSPSP RKKKRRRRKD DDDDVVFVRT EYPEGKRDDE NVGSTSGNLQ
0101: SKSFDFGDRV CDFDADDRNL GCEEKASNFN PIDDDDDVVF VGTVQRENDH VEDDDNVGSA SVISPRVCDF DEDDAKVSGK ENPLSPDDDD DVVFLGTIAG
0201: ENQHVEDVNA GSEVCDILLD DANLRGEEKT YVSDEVVSLS SSSDDEEDPL EELGTDSREE VSGEDRDSGE SDMDEDANDS DSSDYVGESS DSSDVESSDS
0301: DFVCSEDEEG GTRDDATCEK NPSEKVYHHK KSRTFRRKHN FDVINLLAKS MLESKDVFKE DIFSWDKIAE VDSREDPVVR ESSSEKVNEH GKPRERRSFH
0401: RVREKNHLNG ESFYGGEKLC DGEETINYST EDSPPLNLRF GCEEPVLIEK TEEEKELDSL WEDMNVALTL EGMHSSTPDK NGDMLCSKGT HDFVLDDEIG
0501: LKCVHCAYVA VEIKDISPAM DKYRPSVNDN KKCSDRKGDP LPNRLEFDAS DPSSFVAPLD NIEGTVWQYV PGIKDTLYPH QQEGFEFIWK NLAGTTKINE
0601: LNSVGVKGSG GCIISHKAGT GKTRLTVVFL QSYLKRFPNS HPMVIAPATL MRTWEDEVRK WNVNIPFYNM NSLQLSGYED AEAVSRLEGN RHHNSIRMVK
0701: LVSWWKQKSI LGISYPLYEK LAANKNTEGM QVFRRMLVEL PGLLVLDEGH TPRNQSSLIW KVLTEVRTEK RIFLSGTLFQ NNFKELSNVL CLARPADKDT
0801: ISSRIHELSK CSQEGEHGRV NEENRIVDLK AMIAHFVHVH EGTILQESLP GLRDCVVVLN PPFQQKKILD RIDTSQNTFE FEHKLSAVSV HPSLYLCCNP
0901: TKKEDLVIGP ATLGTLKRLR LKYEEGVKTK FLIDFIRISG TVKEKVLVYS QYIDTLKLIM EQLIAECDWT EGEQILLMHG KVEQRDRQHM IDNFNKPDSG
1001: SKVLLASTKA CSEGISLVGA SRVVILDVVW NPSVESQAIS RAFRIGQKRA VFIYHLMVKD TSEWNKYCKQ SEKHRISELV FSSTNEKDKP INNEVVSKDR
1101: ILDEMVRHEK LKHIFEKILY HPKKSDMNTS FF

Arabidopsis Description

CLSY4SNF2 domain-containing protein CLASSY 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.