Factsheet for TraesCS6A01G241100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G053900.1	Wheat	nucleus	88.41	92.73
HORVU6Hr1G061720.1	Barley	cytosol	26.78	85.92
HORVU6Hr1G061730.1	Barley	cytosol, nucleus	25.81	83.29
Solyc08g077650.1.1	Tomato	cytosol	2.72	59.62
TraesCS3A01G220700.1	Wheat	nucleus	45.65	49.24
TraesCS3A01G238800.1	Wheat	nucleus	45.48	49.01
PGSC0003DMT400033315	Potato	nucleus	5.79	45.52
Solyc08g077580.1.1	Tomato	cytosol	6.76	44.51
VIT_02s0012g00110.t01	Wine grape	cytosol	23.7	41.86
CDX77430	Canola	nucleus	24.41	41.31
Solyc04g054440.1.1	Tomato	nucleus	23.53	40.92
Solyc08g061370.1.1	Tomato	cytosol	6.15	40.23
KXG31163	Sorghum	nucleus	44.51	39.67
Solyc08g077590.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	6.06	39.66
Solyc01g068300.1.1	Tomato	cytosol	13.52	39.49
PGSC0003DMT400096321	Potato	nucleus	4.3	39.2
PGSC0003DMT400017302	Potato	nucleus	21.42	39.17
Solyc08g062000.1.1	Tomato	cytosol	13.43	39.13
Solyc08g077610.1.1	Tomato	nucleus	22.83	38.86
Solyc01g068320.1.1	Tomato	cytosol	22.48	38.32
Zm00001d051324_P001	Maize	nucleus	44.6	38.0
Solyc02g033050.1.1	Tomato	nucleus	20.9	37.84
Solyc08g061410.1.1	Tomato	cytosol	14.57	37.81
Solyc03g061640.1.1	Tomato	cytosol	5.44	37.35
Solyc08g077690.2.1	Tomato	nucleus	23.7	36.44
CDY29038	Canola	nucleus	5.62	36.36
CDY59589	Canola	nucleus	5.62	36.36
Solyc01g060460.1.1	Tomato	nucleus	24.23	36.27
Solyc08g062060.1.1	Tomato	nucleus	3.34	35.85
Solyc08g061350.1.1	Tomato	mitochondrion	2.19	35.21
KRH39939	Soybean	nucleus	19.05	35.17
Solyc08g061990.1.1	Tomato	mitochondrion	11.24	33.25
PGSC0003DMT400088837	Potato	cytosol	5.44	32.8
Solyc08g061390.1.1	Tomato	cytosol	7.02	32.26
PGSC0003DMT400004629	Potato	nucleus	25.02	31.95
Solyc01g049740.1.1	Tomato	endoplasmic reticulum, extracellular	6.67	31.54
Solyc08g077600.1.1	Tomato	cytosol	10.8	31.3
CDX93009	Canola	nucleus	26.43	31.03
CDX94823	Canola	nucleus	26.16	30.6
PGSC0003DMT400085993	Potato	cytosol	4.48	30.36
PGSC0003DMT400004673	Potato	nucleus	24.32	30.24
Solyc08g061340.1.1	Tomato	cytosol	5.88	30.04
CDY66441	Canola	nucleus	26.87	29.62
Solyc08g077670.1.1	Tomato	cytosol	11.68	29.36
Bra001944.1-P	Field mustard	nucleus	27.3	29.17
PGSC0003DMT400090992	Potato	mitochondrion	6.23	28.98
Bra015035.1-P	Field mustard	nucleus	26.43	28.89
PGSC0003DMT400004672	Potato	nucleus	25.2	28.84
Solyc08g062070.1.1	Tomato	cytosol	3.25	27.82
PGSC0003DMT400085944	Potato	cytosol	5.62	27.23
KRH23851	Soybean	mitochondrion, nucleus	27.66	27.02
AT3G24340.1	Thale cress	nucleus	26.34	26.5
KRH46527	Soybean	nucleus	26.51	26.31
PGSC0003DMT400037430	Potato	nucleus	15.45	26.19
TraesCS1A01G245700.1	Wheat	mitochondrion, nucleus	32.66	24.98
KRH46528	Soybean	cytosol, extracellular, nucleus	27.13	24.8
PGSC0003DMT400038789	Potato	nucleus	24.06	24.77
PGSC0003DMT400017313	Potato	nucleus	26.16	24.73
CDY47279	Canola	nucleus	28.45	24.23
CDY10115	Canola	nucleus	28.71	23.71
AT1G05490.1	Thale cress	mitochondrion, nucleus	28.8	23.26
TraesCS5A01G340400.1	Wheat	nucleus	18.17	21.61
TraesCS2A01G140400.2	Wheat	cytosol	17.38	20.71
Bra015430.1-P	Field mustard	nucleus	28.53	20.53
TraesCS2A01G182200.1	Wheat	plastid	18.44	20.21
TraesCS4A01G022800.1	Wheat	mitochondrion, plastid	17.03	19.48
TraesCS2A01G089500.1	Wheat	plastid	19.58	17.68
TraesCS3A01G015600.1	Wheat	endoplasmic reticulum, golgi	8.69	16.39
TraesCS6A01G321200.1	Wheat	nucleus	11.24	13.16
TraesCS2A01G185300.1	Wheat	plastid	9.83	12.92
TraesCS2A01G561600.1	Wheat	mitochondrion	10.71	11.41
TraesCS3A01G081900.1	Wheat	nucleus	12.2	11.26
TraesCS1A01G144000.3	Wheat	nucleus	13.87	10.54
TraesCS1A01G442400.2	Wheat	mitochondrion	12.55	6.91

Protein Annotations

MapMan:16.10.1.2	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR038718	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR10799	PANTHER:PTHR10799:SF858	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS6A01G241100	EnsemblPlants:TraesCS6A01G241100.1	TIGR:cd00079	SEG:seg	:

Description

No Description!

Coordinates

chr6A:+:452626962..452630983

Molecular Weight (calculated)

128370.0 Da

IEP (calculated)

5.230

GRAVY (calculated)

-0.859

Length

1139 amino acids

Sequence
(BLAST)

0001: MRGKNKDDES DDNEEEEEDD SEEEDDVMRR NVDVMKGKSK GGDDVMRKKK EDVDVMKGKN KGGDDVMKRK KEDVDVIKGK NKEDDNGNSH GRCKSVEEEA
0101: GGEDDGNTSH DDSSDDNADE EESDDTTDTE TEEEEEEEEA GEEEEEESDE AEQERRVAPR RNGEAGQDQR VTPGSNGEAG GRARPAVEGL QRVRKRRFEG
0201: LWIVEEPDTT APPPGRGLIS ERTRSRLSCS NKKLLKRGTV SRPVLLDTSS SGSEPEEAVP PPQPSSWAAE DDSSGEDRRP AKKKKKRRCR EQIAQGGLSE
0301: EEDDHSDDPD AEPDDDRTFP RNARKGPSSS RPKTGASNRQ QSAAKERGNT HAGSSTNPRR AKNRAANAAE GRGLQDDIFF KKSSLSHRKR KHTEEEDIPC
0401: NDLLSNLFDG IPSYRNGSAP ADAQQGGGDT MPLVFKFGEE AEVKSEHDEL EDQLWGDYDF VLEANNANAH SSDEVEESQG QDIPSDQKTL CSQGKHDLFT
0501: DDQIGTWCKH CKFVLEIKYV MAPMGNYSAE REPTARELNM DYIIFNGILT TMGYEGEYIT GSHKSGPVWN LIPGVREDMF PHQQEAFEFM WKKLAGGIDI
0601: EEVKKFVKTD TLSGCVISHA PGTGKTRLAI TFVQSYLELF PQCFPVIIAP KGMLDTWETE FRKWNVKIPF HILNSRDIHW HGDKTVEKLA SNDKELARRL
0701: SISSIDKNYM RALKLRSWAE GSSIIGLSYS LFQKLTKGEG NDDDKLRQML LQRPDLLILD EGHTPRNKES NIFKALAEVR TKRRIILSGT PFQNNFEELR
0801: SIFSLLLPAN YEAMDFFPSS KLHNVTDVMV EEIRKKLDPF VHIHNGDILQ KSLKGLRESV VILNPLPSQK RIIAMMEKHK TRGKRPQKEK THSGTFESEY
0901: KISLASVHPS LAAGMKKLPK EVTSVLDELP LERLRLKPSE GVKTRFVYEV VRLCQALKER VLVFSQFLEP LELIMQQLRK AFNWTKGKEI LYMSGKISPK
1001: TRKALMVAFN DVESEAKVML ASTKACGEGI TLVGASRVVL LDVVWNPSVG RQAIGRAYRI GQQKIVHTYN LIAEGTQEKA KYDTQAKKDQ MSKLLFSSEP
1101: QPAECSRSSE FISNDRILEQ MTEDENLKEM FVSILPSQW

Best Arabidopsis Sequence Match ( AT1G05490.1 )
(BLAST)

0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP

Arabidopsis Description

CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.