Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47279 | Canola | nucleus | 81.93 | 97.01 |
| CDY10115 | Canola | nucleus | 82.88 | 95.14 |
| AT1G05490.1 | Thale cress | mitochondrion, nucleus | 59.13 | 66.38 |
| VIT_02s0012g00110.t01 | Wine grape | cytosol | 21.16 | 51.94 |
| KRH39939 | Soybean | nucleus | 18.51 | 47.49 |
| HORVU6Hr1G061730.1 | Barley | cytosol, nucleus | 10.49 | 47.03 |
| Os05t0392400-01 | Rice | cytosol, nucleus | 13.27 | 46.67 |
| Bra015035.1-P | Field mustard | nucleus | 28.17 | 42.8 |
| Bra001944.1-P | Field mustard | nucleus | 27.98 | 41.56 |
| Os02t0650800-00 | Rice | cytosol | 20.85 | 35.22 |
| GSMUA_Achr7P06840_001 | Banana | nucleus | 20.59 | 34.57 |
| KRH23851 | Soybean | mitochondrion, nucleus | 25.14 | 34.13 |
| KRH46527 | Soybean | nucleus | 24.32 | 33.54 |
| KRH46528 | Soybean | cytosol, extracellular, nucleus | 25.52 | 32.42 |
| TraesCS3B01G251000.1 | Wheat | nucleus | 21.29 | 31.76 |
| TraesCS3A01G220700.1 | Wheat | nucleus | 21.16 | 31.72 |
| TraesCS3A01G238800.1 | Wheat | nucleus | 20.91 | 31.32 |
| HORVU6Hr1G061720.1 | Barley | cytosol | 6.44 | 28.73 |
| TraesCS6A01G241100.1 | Wheat | nucleus | 20.53 | 28.53 |
| TraesCS2D01G053900.1 | Wheat | nucleus | 19.46 | 28.36 |
| TraesCS3D01G231800.1 | Wheat | nucleus | 22.3 | 27.8 |
| KXG31163 | Sorghum | nucleus | 22.11 | 27.39 |
| HORVU3Hr1G054100.2 | Barley | nucleus | 21.98 | 27.36 |
| Zm00001d051324_P001 | Maize | nucleus | 22.49 | 26.63 |
| Zm00001d038113_P001 | Maize | mitochondrion, nucleus | 23.12 | 25.51 |
| Bra021841.1-P | Field mustard | cytosol | 12.19 | 25.26 |
| OQU77943 | Sorghum | mitochondrion | 23.25 | 25.24 |
| HORVU1Hr1G062970.3 | Barley | mitochondrion | 23.56 | 25.17 |
| TraesCS1D01G245400.1 | Wheat | nucleus | 23.56 | 25.12 |
| TraesCS1A01G245700.1 | Wheat | mitochondrion, nucleus | 23.63 | 25.12 |
| TraesCS1B01G256700.1 | Wheat | mitochondrion, nucleus | 23.69 | 25.12 |
| Bra021058.1-P | Field mustard | nucleus | 16.36 | 20.38 |
| Bra002302.1-P | Field mustard | cytosol | 15.92 | 20.22 |
| Bra000888.1-P | Field mustard | cytosol | 5.5 | 18.95 |
| Bra022395.1-P | Field mustard | nucleus | 8.46 | 14.68 |
| Bra024192.1-P | Field mustard | nucleus | 8.78 | 11.97 |
| Bra024250.1-P | Field mustard | cytosol | 8.34 | 11.45 |
| Bra032544.1-P | Field mustard | nucleus | 8.15 | 7.85 |
| Bra007061.1-P | Field mustard | mitochondrion | 9.6 | 7.42 |
| Bra018612.1-P | Field mustard | nucleus | 10.49 | 6.41 |
| Bra031634.1-P | Field mustard | nucleus | 1.58 | 4.3 |
| HORVU3Hr1G014620.1 | Barley | nucleus | 0.19 | 2.78 |
| Os02t0762600-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.10.1.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EnsemblPlantsGene:Bra015430 | EnsemblPlants:Bra015430.1 | EnsemblPlants:Bra015430.1-P |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M4DG07 | InterPro:P-loop_NTPase | PFAM:PF00176 |
| PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF858 | SMART:SM00487 |
| SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI00025438EC | SEG:seg |
Description
AT1G05490 (E=0.0) chr31 | chr31 (chromatin remodeling 31); ATP binding / DNA binding / helicase/ nucleic acid binding
Coordinates
chrA10:+:1811485..1816421
Molecular Weight (calculated)
178845.0 Da
IEP (calculated)
5.036
GRAVY (calculated)
-0.745
Length
1583 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDWIGSRIKF RNKERLEEVK KMKPAEEEAH VSSRRKRKRK RRHRDHDSDL EDITETYHNN NLPADVTQSK SSGSVRRRRR RKDHDSDIED ITEAYHKDHD
0101: SDLVDVTETC NTDHDSDLVD VTVTYNNNLP AEVTDNNFSD GDGVKRTESE HNMEEEEEGL FSVRVEEVDT SVPGPSGLSI KEKLLSDEVL DLDMVKSAPS
0201: LPDEVLGLDV VKSVPVLSDE IPDLDVIKSV PSCSSESSIQ QKLCDEIMDV IRSAESSSES SIKEKLSEEI MDVDVVKPVP KLSDGIMDVD VVKSVPSSSG
0301: SSNKGNESLD SDVVKSVTSS SGSEENTCVK DKCSSEVRGV EAAKPVPAEI EIISDSESET KHSTKKKLSF AECSRVLDST SESSEEEGAS ETNNNAKEDV
0401: TVESLSSSSS SSSSSSSSAS ALSLSSSSSS SSEDEVSSKE VVGESDDDDC RKASSPIRKV SEVRRKPLGR YKRAGPSSIT PRKQFQKIRK LNHPEEEEED
0501: RLQAKPKEFK MIQKLNRPEE EEEDRFQAKP VKEFKRLQKV NRQEEEEERF QAKPVQEFKR LQKLNRQEEE DDRFQTKPRN EDKTIQKFNL QEEEEDRFQD
0601: KPRNEDRRIQ KFHCPEEEQQ HIGVERVTKE HSNVVFTCVH CDKENTGIFD SDSFCFRPHA ITRGEEDADD LNKHDYVPIN TEKSPEKPST SRPETENPKE
0701: VITPARPSTS RPETVKAKEI QAPEMPPRQF SLKTSMPVTP AEGLATPSLV NETVDNESAS SIISGDESGY ESEPSLKEKE AAKSNNNNSG WRMLDGSRKE
0801: VDLFRLLVNS VRENDRLGEE EEDDILVSSP EEEQPEEQDE RKYDDDGLLI IRPPPLVEMF GMVEPAPPVV SEAQIEEDTM WEEVAFYTNA NEIEKEISAD
0901: DSPGAACRQG NHELCLDLEI GLKCIHCCFV LREIRGLDVS EWGERNTSGR RKNDRSEEEE NSNFIGNLDF EANSNNNLKE GSESTQGTVW DKIPGVKSQM
1001: YPHQQEGFEF IWRNLAGTIM LNELQDFENS EETGGCIMSH APGTGKTRLT IIFLQSYLEC FPNCKPVIIA PASLLLTWAE EFKKWNISIP FHNLSSLEFT
1101: GRENSAASKL LMQKNSSARS NNEIRMVKIY SWIKSKSILG ISYNLYEKLA GVKDEDRKTK GKPDKELEDI REILMDVPGL LVLDEAHTPR NQRSCIWKTL
1201: SKVETQKRIL LSGTPFQNNF LELGNVLGLA RPKYLERLMS TLKKSGMTVT KRGKKALGDK INNRGIEELK AVMLPFVHVH KGSILQKSLP GLRECVVVLN
1301: PPNLQRKVLE SIEVTHNQKT KNVFETEHKL SLVSVHPSLV SHCKLTGKES LTINEALLAQ LKKVRLDPNQ SVKTRFLMEF IKLCVVIKEK VLVFSQYIDP
1401: LKLIMKHLVN WFKWTEGEEV LYMHGKLEQK QRQTLINEFN DPKSKAKVLL ASTKACSEGI NLVGASRVIL LDVVWNPAVE RQAISRAYRI GQKRIVYTYH
1501: LVAKGTPEGT KYCKQAQKDR ISELVFACSS RPDKGKEKIA EAVTEDKVLD TMVKHLKLGD MFDNLIVQPK EADLVEGFSI LMP
0101: SDLVDVTETC NTDHDSDLVD VTVTYNNNLP AEVTDNNFSD GDGVKRTESE HNMEEEEEGL FSVRVEEVDT SVPGPSGLSI KEKLLSDEVL DLDMVKSAPS
0201: LPDEVLGLDV VKSVPVLSDE IPDLDVIKSV PSCSSESSIQ QKLCDEIMDV IRSAESSSES SIKEKLSEEI MDVDVVKPVP KLSDGIMDVD VVKSVPSSSG
0301: SSNKGNESLD SDVVKSVTSS SGSEENTCVK DKCSSEVRGV EAAKPVPAEI EIISDSESET KHSTKKKLSF AECSRVLDST SESSEEEGAS ETNNNAKEDV
0401: TVESLSSSSS SSSSSSSSAS ALSLSSSSSS SSEDEVSSKE VVGESDDDDC RKASSPIRKV SEVRRKPLGR YKRAGPSSIT PRKQFQKIRK LNHPEEEEED
0501: RLQAKPKEFK MIQKLNRPEE EEEDRFQAKP VKEFKRLQKV NRQEEEEERF QAKPVQEFKR LQKLNRQEEE DDRFQTKPRN EDKTIQKFNL QEEEEDRFQD
0601: KPRNEDRRIQ KFHCPEEEQQ HIGVERVTKE HSNVVFTCVH CDKENTGIFD SDSFCFRPHA ITRGEEDADD LNKHDYVPIN TEKSPEKPST SRPETENPKE
0701: VITPARPSTS RPETVKAKEI QAPEMPPRQF SLKTSMPVTP AEGLATPSLV NETVDNESAS SIISGDESGY ESEPSLKEKE AAKSNNNNSG WRMLDGSRKE
0801: VDLFRLLVNS VRENDRLGEE EEDDILVSSP EEEQPEEQDE RKYDDDGLLI IRPPPLVEMF GMVEPAPPVV SEAQIEEDTM WEEVAFYTNA NEIEKEISAD
0901: DSPGAACRQG NHELCLDLEI GLKCIHCCFV LREIRGLDVS EWGERNTSGR RKNDRSEEEE NSNFIGNLDF EANSNNNLKE GSESTQGTVW DKIPGVKSQM
1001: YPHQQEGFEF IWRNLAGTIM LNELQDFENS EETGGCIMSH APGTGKTRLT IIFLQSYLEC FPNCKPVIIA PASLLLTWAE EFKKWNISIP FHNLSSLEFT
1101: GRENSAASKL LMQKNSSARS NNEIRMVKIY SWIKSKSILG ISYNLYEKLA GVKDEDRKTK GKPDKELEDI REILMDVPGL LVLDEAHTPR NQRSCIWKTL
1201: SKVETQKRIL LSGTPFQNNF LELGNVLGLA RPKYLERLMS TLKKSGMTVT KRGKKALGDK INNRGIEELK AVMLPFVHVH KGSILQKSLP GLRECVVVLN
1301: PPNLQRKVLE SIEVTHNQKT KNVFETEHKL SLVSVHPSLV SHCKLTGKES LTINEALLAQ LKKVRLDPNQ SVKTRFLMEF IKLCVVIKEK VLVFSQYIDP
1401: LKLIMKHLVN WFKWTEGEEV LYMHGKLEQK QRQTLINEFN DPKSKAKVLL ASTKACSEGI NLVGASRVIL LDVVWNPAVE RQAISRAYRI GQKRIVYTYH
1501: LVAKGTPEGT KYCKQAQKDR ISELVFACSS RPDKGKEKIA EAVTEDKVLD TMVKHLKLGD MFDNLIVQPK EADLVEGFSI LMP
0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP
Arabidopsis Description
CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.