Factsheet for VIT_02s0012g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g077650.1.1	Tomato	cytosol	6.05	75.0
PGSC0003DMT400033315	Potato	nucleus	12.56	55.86
Solyc08g077590.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	15.04	55.75
PGSC0003DMT400088837	Potato	cytosol	15.19	51.85
Solyc08g061350.1.1	Tomato	mitochondrion	5.58	50.7
CDY29038	Canola	nucleus	13.64	50.0
Solyc03g061640.1.1	Tomato	cytosol	12.87	50.0
Os05t0392400-01	Rice	cytosol, nucleus	34.57	49.56
CDY59589	Canola	nucleus	13.49	49.43
Solyc01g068300.1.1	Tomato	cytosol	29.61	48.97
CDX77430	Canola	nucleus	50.39	48.29
PGSC0003DMT400096321	Potato	nucleus	9.3	48.0
HORVU6Hr1G061730.1	Barley	cytosol, nucleus	25.89	47.31
Solyc08g077580.1.1	Tomato	cytosol	12.56	46.82
Solyc04g054440.1.1	Tomato	nucleus	46.2	45.5
Solyc08g061370.1.1	Tomato	cytosol	12.25	45.4
Solyc01g068320.1.1	Tomato	cytosol	46.36	44.76
PGSC0003DMT400017302	Potato	nucleus	42.95	44.46
Solyc08g077610.1.1	Tomato	nucleus	45.89	44.25
Solyc08g061410.1.1	Tomato	cytosol	29.77	43.74
Solyc08g062000.1.1	Tomato	cytosol	26.51	43.73
Solyc02g033050.1.1	Tomato	nucleus	42.48	43.56
PGSC0003DMT400090992	Potato	mitochondrion	16.43	43.27
KRH39939	Soybean	nucleus	40.93	42.79
Solyc08g061340.1.1	Tomato	cytosol	14.73	42.6
Solyc08g077690.2.1	Tomato	nucleus	47.13	41.03
Solyc01g049740.1.1	Tomato	endoplasmic reticulum, extracellular	14.88	39.83
Solyc01g060460.1.1	Tomato	nucleus	46.98	39.82
Solyc08g061990.1.1	Tomato	mitochondrion	23.26	38.96
Solyc08g062060.1.1	Tomato	nucleus	6.05	36.79
Solyc08g077600.1.1	Tomato	cytosol	22.17	36.39
PGSC0003DMT400085993	Potato	cytosol	9.46	36.31
Solyc08g062070.1.1	Tomato	cytosol	7.29	35.34
CDX93009	Canola	nucleus	50.08	33.3
CDX94823	Canola	nucleus	49.61	32.85
Solyc08g061390.1.1	Tomato	cytosol	12.56	32.66
PGSC0003DMT400004629	Potato	nucleus	44.81	32.4
Bra015035.1-P	Field mustard	nucleus	50.85	31.48
CDY66441	Canola	nucleus	50.39	31.46
GSMUA_Achr7P06840_001	Banana	nucleus	45.58	31.18
PGSC0003DMT400004673	Potato	nucleus	43.26	30.46
Os02t0650800-00	Rice	cytosol	44.19	30.42
Bra001944.1-P	Field mustard	nucleus	50.08	30.3
PGSC0003DMT400085944	Potato	cytosol	10.85	29.79
PGSC0003DMT400004672	Potato	nucleus	44.5	28.84
Solyc08g077670.1.1	Tomato	cytosol	19.84	28.26
KRH23851	Soybean	mitochondrion, nucleus	50.85	28.13
TraesCS3A01G220700.1	Wheat	nucleus	45.74	27.94
KRH46527	Soybean	nucleus	49.46	27.79
TraesCS3B01G251000.1	Wheat	nucleus	45.43	27.62
VIT_06s0004g08480.t01	Wine grape	mitochondrion, plastid	29.15	27.61
TraesCS3A01G238800.1	Wheat	nucleus	45.12	27.53
AT3G24340.1	Thale cress	nucleus	46.82	26.68
PGSC0003DMT400017313	Potato	nucleus	48.06	25.73
KRH46528	Soybean	cytosol, extracellular, nucleus	49.15	25.44
PGSC0003DMT400037430	Potato	nucleus	26.36	25.3
CDY47279	Canola	nucleus	52.09	25.13
CDY10115	Canola	nucleus	51.78	24.22
AT1G05490.1	Thale cress	mitochondrion, nucleus	52.71	24.11
VIT_03s0038g04290.t01	Wine grape	nucleus	8.22	23.98
TraesCS6A01G241100.1	Wheat	nucleus	41.86	23.7
PGSC0003DMT400038789	Potato	nucleus	40.62	23.69
TraesCS2D01G053900.1	Wheat	nucleus	39.53	23.48
HORVU3Hr1G054100.2	Barley	nucleus	46.2	23.43
TraesCS3D01G231800.1	Wheat	nucleus	45.89	23.31
KXG31163	Sorghum	nucleus	43.72	22.07
Zm00001d038113_P001	Maize	mitochondrion, nucleus	47.44	21.32
HORVU1Hr1G062970.3	Barley	mitochondrion	48.84	21.26
TraesCS1D01G245400.1	Wheat	nucleus	48.84	21.21
OQU77943	Sorghum	mitochondrion	47.91	21.19
Bra015430.1-P	Field mustard	nucleus	51.94	21.16
TraesCS1A01G245700.1	Wheat	mitochondrion, nucleus	48.68	21.09
TraesCS1B01G256700.1	Wheat	mitochondrion, nucleus	48.68	21.03
Zm00001d051324_P001	Maize	nucleus	43.57	21.02
HORVU6Hr1G061720.1	Barley	cytosol	11.47	20.85
VIT_03s0038g00030.t01	Wine grape	nucleus	29.15	19.77
VIT_13s0067g01950.t01	Wine grape	nucleus	32.87	16.71
VIT_12s0028g03440.t01	Wine grape	plastid	19.84	14.65
VIT_04s0044g01680.t01	Wine grape	cytosol	20.47	12.66
VIT_03s0063g00580.t01	Wine grape	nucleus	16.9	11.15
VIT_07s0005g03670.t01	Wine grape	nucleus	20.31	10.68
VIT_14s0036g01460.t01	Wine grape	nucleus	22.79	9.95
VIT_15s0024g00350.t01	Wine grape	mitochondrion	17.83	5.69
HORVU3Hr1G014620.1	Barley	nucleus	0.47	2.78
Os02t0762600-01	Rice	cytosol	0.0	0.0

Protein Annotations

EntrezGene:100267731	wikigene:100267731	MapMan:16.10.1.2	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ProteinID:CCB57958
ProteinID:CCB57958.1	ncoils:Coil	UniProt:F6HTE8	EMBL:FN596247	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR038718	EntrezGene:LOC100267731	wikigene:LOC100267731	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF858	SMART:SM00487	SMART:SM00490
InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI00021085CD	ArrayExpress:VIT_02s0012g00110	EnsemblPlantsGene:VIT_02s0012g00110
EnsemblPlants:VIT_02s0012g00110.t01	RefSeq:XP_002279753	RefSeq:XP_002279753.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:5723377..5725314

Molecular Weight (calculated)

73674.2 Da

IEP (calculated)

9.655

GRAVY (calculated)

-0.382

Length

645 amino acids

Sequence
(BLAST)

001: MLKSRNPWGG SEKGNAGKED CNSIFDELQF QKPGCGSQSG SDHGLHPEGT VWDIIPGIRN SMYRHQCEGF EFIWKNVAGG IYLDELKRSS FSDGGSGCII
101: SHAPGTGKTR LTIVFLQTYM ELYPACRPVI IAPRTMLLTW EEEFKKWNVD IPFHNLNKLE YSGKENITAL NFLRRISHQG QSAKSIRMVK LYSWKKDRSI
201: LGISYTLFEK LAGERVLADQ ENKKVKVQDY TKVQVRKILL ELPGLLVLDE GHTPRNEQSL IWKALSKIDT ERRIILSGTP FQNNFKELYN TLCLVRPKFA
301: DRIAVEQYGG FRGKRGRKSN AARGKWDLLT SSIGKIADDK VEELRAMIEP FVHIHKGTIL QENLPGLKDS VVVLQPSDLQ RRLLESIREK KNPLELGYLV
401: SLISVHPSLL PSDERKLFFD QTKLEKIKLN PDIGVKTKFL MAFIRFSETM NEKVLVFSQF LDPLTYLMDQ LKYHFHWIVG KEVLYMDGQR DVKQRQSSIN
501: TFNDPASQVR VLLASTKACS EGISLVGASR VILLDVVWNP SVERQAISRA YRLGQRKVVY IYHLLTSGTM EEEKYCRQAK KDRLSELVFS SKDKTSAGNK
601: ISSTVSEDKI LEEMVQHNKL KDMFDKIINQ PKESNLIETF GLVDI

Best Arabidopsis Sequence Match ( AT1G05490.1 )
(BLAST)

0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP

Arabidopsis Description

CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.