Factsheet for PGSC0003DMT400085944

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400088837	Potato	cytosol	27.66	34.39
PGSC0003DMT400085993	Potato	cytosol	20.43	28.57
PGSC0003DMT400090992	Potato	mitochondrion	28.51	27.35
Solyc08g077670.1.1	Tomato	cytosol	36.17	18.76
Solyc08g061370.1.1	Tomato	cytosol	13.62	18.39
PGSC0003DMT400037430	Potato	nucleus	37.87	13.24
PGSC0003DMT400017302	Potato	nucleus	31.06	11.72
PGSC0003DMT400004629	Potato	nucleus	42.98	11.32
VIT_02s0012g00110.t01	Wine grape	cytosol	29.79	10.85
Os05t0392400-01	Rice	cytosol, nucleus	18.72	9.78
PGSC0003DMT400004672	Potato	nucleus	40.43	9.55
GSMUA_Achr7P06840_001	Banana	nucleus	32.77	8.17
PGSC0003DMT400017313	Potato	nucleus	40.85	7.97
PGSC0003DMT400004673	Potato	nucleus	29.36	7.53
Os02t0650800-00	Rice	cytosol	29.79	7.47
Zm00001d047708_P001	Maize	cytosol	5.11	6.98
KRH39939	Soybean	nucleus	17.87	6.81
TraesCS3A01G220700.1	Wheat	nucleus	28.51	6.34
TraesCS3B01G251000.1	Wheat	nucleus	28.51	6.31
TraesCS3A01G238800.1	Wheat	nucleus	28.09	6.24
AT3G24340.1	Thale cress	nucleus	28.94	6.01
PGSC0003DMT400038789	Potato	nucleus	28.09	5.97
TraesCS2D01G053900.1	Wheat	nucleus	27.23	5.89
KRH23851	Soybean	mitochondrion, nucleus	28.94	5.83
KXG31163	Sorghum	nucleus	31.49	5.79
PGSC0003DMT400079488	Potato	nucleus	22.13	5.62
TraesCS6A01G241100.1	Wheat	nucleus	27.23	5.62
KRH46527	Soybean	nucleus	26.81	5.49
TraesCS3D01G231800.1	Wheat	nucleus	28.51	5.28
KRH46528	Soybean	cytosol, extracellular, nucleus	27.66	5.22
TraesCS1D01G245400.1	Wheat	nucleus	32.77	5.19
TraesCS1A01G245700.1	Wheat	mitochondrion, nucleus	32.77	5.17
TraesCS1B01G256700.1	Wheat	mitochondrion, nucleus	32.77	5.16
OQU77943	Sorghum	mitochondrion	30.21	4.87
PGSC0003DMT400076122	Potato	cytosol, nucleus, plastid	14.89	4.82
AT1G05490.1	Thale cress	mitochondrion, nucleus	28.09	4.68
PGSC0003DMT400061540	Potato	nucleus	25.53	4.67
PGSC0003DMT400082782	Potato	plastid	15.74	4.17
PGSC0003DMT400033315	Potato	nucleus	2.13	3.45
PGSC0003DMT400096321	Potato	nucleus	1.7	3.2
PGSC0003DMT400026641	Potato	nucleus	14.04	2.72
HORVU3Hr1G014630.1	Barley	cytosol, nucleus, plastid	0.43	0.33
Os02t0161300-01	Rice	extracellular	0.43	0.2
Bra031634.1-P	Field mustard	nucleus	0.43	0.17
CDY06321	Canola	nucleus	0.43	0.17
Os02t0762600-01	Rice	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400085944	EnsemblPlantsGene:PGSC0003DMG400035515	Gene3D:3.40.50.10810	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:IPR038718	InterPro:P-loop_NTPase	InterPro:SNF2-like_sf	InterPro:SNF2_N	PANTHER:PTHR10799
PANTHER:PTHR10799:SF858	PFAM:PF00176	PGSC:PGSC0003DMG400035515	SUPFAM:SSF52540	UniParc:UPI0002956945	UniProt:M1DAM3
MapMan:35.1	:	:	:	:	:

Description

Chromatin remodeling complex subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400035515]

Coordinates

chr8:-:35307986..35309283

Molecular Weight (calculated)

26878.6 Da

IEP (calculated)

7.265

GRAVY (calculated)

-0.094

Length

235 amino acids

Sequence
(BLAST)

001: MCVLESHIGF MNPLVSPMQS GQLSDCHMGN HTFVLDEQIG LIFSVCSYVH LESKYIFPYR LVIIAPSSLL LNWEAEFQKW KVDIPFYNLN NKDFSSQEEE
101: ATILVFGCLS HAGRKYPHLI SLVKLKSWDE KGHIAQNEQS LLWQALRKVE TEKRILISGT PFQTNIKEFY STLSIVYPKF GADPDQKWVS ISSSIDKNSR
201: ALEELRDITS PVVHTCIKDV KKVSLMGIKN TMIHL

Best Arabidopsis Sequence Match ( AT1G05490.1 )
(BLAST)

0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP

Arabidopsis Description

CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.