Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77430 | Canola | nucleus | 41.25 | 69.39 |
| Solyc08g077650.1.1 | Tomato | cytosol | 3.0 | 65.38 |
| CDY29038 | Canola | nucleus | 10.16 | 65.34 |
| CDX93009 | Canola | nucleus | 55.21 | 64.43 |
| CDY59589 | Canola | nucleus | 9.98 | 64.2 |
| CDY66441 | Canola | nucleus | 58.48 | 64.09 |
| Bra015035.1-P | Field mustard | nucleus | 58.57 | 63.63 |
| CDX94823 | Canola | nucleus | 54.33 | 63.14 |
| Bra001944.1-P | Field mustard | nucleus | 59.28 | 62.95 |
| PGSC0003DMT400033315 | Potato | nucleus | 6.36 | 49.66 |
| VIT_02s0012g00110.t01 | Wine grape | cytosol | 26.68 | 46.82 |
| HORVU6Hr1G061730.1 | Barley | cytosol, nucleus | 13.96 | 44.76 |
| Solyc08g077590.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 6.8 | 44.25 |
| Os05t0392400-01 | Rice | cytosol, nucleus | 17.23 | 43.33 |
| Solyc08g061370.1.1 | Tomato | cytosol | 6.63 | 43.1 |
| KRH39939 | Soybean | nucleus | 23.41 | 42.95 |
| Solyc01g068320.1.1 | Tomato | cytosol | 25.27 | 42.81 |
| Solyc04g054440.1.1 | Tomato | nucleus | 24.56 | 42.44 |
| PGSC0003DMT400017302 | Potato | nucleus | 23.32 | 42.38 |
| Solyc08g077580.1.1 | Tomato | cytosol | 6.45 | 42.2 |
| Solyc08g077610.1.1 | Tomato | nucleus | 24.91 | 42.15 |
| PGSC0003DMT400096321 | Potato | nucleus | 4.59 | 41.6 |
| Solyc08g062060.1.1 | Tomato | nucleus | 3.89 | 41.51 |
| Solyc08g061410.1.1 | Tomato | cytosol | 15.99 | 41.23 |
| Solyc02g033050.1.1 | Tomato | nucleus | 22.79 | 41.02 |
| Solyc08g061350.1.1 | Tomato | mitochondrion | 2.56 | 40.85 |
| Solyc01g060460.1.1 | Tomato | nucleus | 27.3 | 40.6 |
| Solyc01g068300.1.1 | Tomato | cytosol | 13.96 | 40.51 |
| Solyc03g061640.1.1 | Tomato | cytosol | 5.92 | 40.36 |
| Solyc08g077690.2.1 | Tomato | nucleus | 26.06 | 39.81 |
| Solyc08g062000.1.1 | Tomato | cytosol | 13.25 | 38.36 |
| PGSC0003DMT400088837 | Potato | cytosol | 6.36 | 38.1 |
| Solyc08g061390.1.1 | Tomato | cytosol | 8.22 | 37.5 |
| Solyc01g049740.1.1 | Tomato | endoplasmic reticulum, extracellular | 7.6 | 35.68 |
| Solyc08g061990.1.1 | Tomato | mitochondrion | 11.57 | 34.03 |
| PGSC0003DMT400090992 | Potato | mitochondrion | 7.33 | 33.88 |
| Solyc08g077600.1.1 | Tomato | cytosol | 11.75 | 33.84 |
| PGSC0003DMT400004673 | Potato | nucleus | 27.03 | 33.41 |
| PGSC0003DMT400004629 | Potato | nucleus | 26.24 | 33.3 |
| Solyc08g062070.1.1 | Tomato | cytosol | 3.8 | 32.33 |
| GSMUA_Achr7P06840_001 | Banana | nucleus | 26.59 | 31.92 |
| KRH23851 | Soybean | mitochondrion, nucleus | 32.86 | 31.9 |
| AT1G05490.1 | Thale cress | mitochondrion, nucleus | 39.66 | 31.84 |
| Solyc08g061340.1.1 | Tomato | cytosol | 6.27 | 31.84 |
| Solyc08g077670.1.1 | Tomato | cytosol | 12.72 | 31.79 |
| KRH46527 | Soybean | nucleus | 32.07 | 31.62 |
| PGSC0003DMT400085993 | Potato | cytosol | 4.68 | 31.55 |
| Os02t0650800-00 | Rice | cytosol | 25.97 | 31.38 |
| PGSC0003DMT400004672 | Potato | nucleus | 27.39 | 31.16 |
| KRH46528 | Soybean | cytosol, extracellular, nucleus | 33.04 | 30.02 |
| TraesCS3A01G220700.1 | Wheat | nucleus | 27.56 | 29.55 |
| TraesCS3B01G251000.1 | Wheat | nucleus | 27.56 | 29.41 |
| TraesCS3A01G238800.1 | Wheat | nucleus | 27.39 | 29.33 |
| PGSC0003DMT400037430 | Potato | nucleus | 17.4 | 29.32 |
| PGSC0003DMT400085944 | Potato | cytosol | 6.01 | 28.94 |
| PGSC0003DMT400017313 | Potato | nucleus | 29.68 | 27.88 |
| PGSC0003DMT400038789 | Potato | nucleus | 26.77 | 27.4 |
| HORVU6Hr1G061720.1 | Barley | cytosol | 8.3 | 26.48 |
| TraesCS6A01G241100.1 | Wheat | nucleus | 26.5 | 26.34 |
| TraesCS2D01G053900.1 | Wheat | nucleus | 25.18 | 26.24 |
| TraesCS3D01G231800.1 | Wheat | nucleus | 28.98 | 25.83 |
| KXG31163 | Sorghum | nucleus | 29.06 | 25.74 |
| HORVU3Hr1G054100.2 | Barley | nucleus | 28.89 | 25.71 |
| Zm00001d051324_P001 | Maize | nucleus | 29.06 | 24.61 |
| Zm00001d038113_P001 | Maize | mitochondrion, nucleus | 30.21 | 23.83 |
| TraesCS1D01G245400.1 | Wheat | nucleus | 31.1 | 23.7 |
| TraesCS1B01G256700.1 | Wheat | mitochondrion, nucleus | 31.18 | 23.64 |
| TraesCS1A01G245700.1 | Wheat | mitochondrion, nucleus | 31.01 | 23.57 |
| OQU77943 | Sorghum | mitochondrion | 30.12 | 23.39 |
| HORVU1Hr1G062970.3 | Barley | mitochondrion | 30.57 | 23.35 |
| AT3G32330.1 | Thale cress | cytosol | 6.63 | 22.94 |
| AT2G21450.2 | Thale cress | nucleus | 16.61 | 22.84 |
| AT2G16390.2 | Thale cress | nucleus | 17.4 | 22.11 |
| AT5G20420.1 | Thale cress | cytosol | 21.55 | 19.35 |
| AT3G42670.4 | Thale cress | nucleus | 21.11 | 19.0 |
| AT3G31900.1 | Thale cress | cytosol | 5.21 | 15.01 |
| AT1G03750.1 | Thale cress | plastid | 10.51 | 13.81 |
| AT3G32280.1 | Thale cress | endoplasmic reticulum, plasma membrane | 5.74 | 13.71 |
| AT3G19210.1 | Thale cress | nucleus | 10.34 | 12.86 |
| AT5G63950.1 | Thale cress | cytosol | 11.75 | 12.2 |
| AT2G18760.3 | Thale cress | nucleus | 11.75 | 10.67 |
| AT1G08600.3 | Thale cress | nucleus | 13.07 | 10.01 |
| AT3G54280.2 | Thale cress | mitochondrion | 11.13 | 5.92 |
| HORVU3Hr1G014620.1 | Barley | nucleus | 0.44 | 4.63 |
| Os02t0762600-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.10.1.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EntrezGene:822023 | ProteinID:AEE76891.1 | ArrayExpress:AT3G24340 |
| EnsemblPlantsGene:AT3G24340 | RefSeq:AT3G24340 | TAIR:AT3G24340 | RefSeq:AT3G24340-TAIR-G | EnsemblPlants:AT3G24340.1 | TAIR:AT3G24340.1 |
| Unigene:At.37544 | ProteinID:BAB02934.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR038718 | RefSeq:NP_189077.1 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0001017 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF858 |
| UniProt:Q9LK10 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| UniParc:UPI00000A3072 | Symbol:chr40 | SEG:seg | : | : | : |
Description
CLSY4SNF2 domain-containing protein CLASSY 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK10]
Coordinates
chr3:-:8831935..8835829
Molecular Weight (calculated)
128350.0 Da
IEP (calculated)
4.812
GRAVY (calculated)
-0.680
Length
1132 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDMTSCVARR TRSRTESYLN SILNKSKGIS GEEEDQSLGC VNSRTEKRRV NMRDACSPSP RKKKRRRRKD DDDDVVFVRT EYPEGKRDDE NVGSTSGNLQ
0101: SKSFDFGDRV CDFDADDRNL GCEEKASNFN PIDDDDDVVF VGTVQRENDH VEDDDNVGSA SVISPRVCDF DEDDAKVSGK ENPLSPDDDD DVVFLGTIAG
0201: ENQHVEDVNA GSEVCDILLD DANLRGEEKT YVSDEVVSLS SSSDDEEDPL EELGTDSREE VSGEDRDSGE SDMDEDANDS DSSDYVGESS DSSDVESSDS
0301: DFVCSEDEEG GTRDDATCEK NPSEKVYHHK KSRTFRRKHN FDVINLLAKS MLESKDVFKE DIFSWDKIAE VDSREDPVVR ESSSEKVNEH GKPRERRSFH
0401: RVREKNHLNG ESFYGGEKLC DGEETINYST EDSPPLNLRF GCEEPVLIEK TEEEKELDSL WEDMNVALTL EGMHSSTPDK NGDMLCSKGT HDFVLDDEIG
0501: LKCVHCAYVA VEIKDISPAM DKYRPSVNDN KKCSDRKGDP LPNRLEFDAS DPSSFVAPLD NIEGTVWQYV PGIKDTLYPH QQEGFEFIWK NLAGTTKINE
0601: LNSVGVKGSG GCIISHKAGT GKTRLTVVFL QSYLKRFPNS HPMVIAPATL MRTWEDEVRK WNVNIPFYNM NSLQLSGYED AEAVSRLEGN RHHNSIRMVK
0701: LVSWWKQKSI LGISYPLYEK LAANKNTEGM QVFRRMLVEL PGLLVLDEGH TPRNQSSLIW KVLTEVRTEK RIFLSGTLFQ NNFKELSNVL CLARPADKDT
0801: ISSRIHELSK CSQEGEHGRV NEENRIVDLK AMIAHFVHVH EGTILQESLP GLRDCVVVLN PPFQQKKILD RIDTSQNTFE FEHKLSAVSV HPSLYLCCNP
0901: TKKEDLVIGP ATLGTLKRLR LKYEEGVKTK FLIDFIRISG TVKEKVLVYS QYIDTLKLIM EQLIAECDWT EGEQILLMHG KVEQRDRQHM IDNFNKPDSG
1001: SKVLLASTKA CSEGISLVGA SRVVILDVVW NPSVESQAIS RAFRIGQKRA VFIYHLMVKD TSEWNKYCKQ SEKHRISELV FSSTNEKDKP INNEVVSKDR
1101: ILDEMVRHEK LKHIFEKILY HPKKSDMNTS FF
0101: SKSFDFGDRV CDFDADDRNL GCEEKASNFN PIDDDDDVVF VGTVQRENDH VEDDDNVGSA SVISPRVCDF DEDDAKVSGK ENPLSPDDDD DVVFLGTIAG
0201: ENQHVEDVNA GSEVCDILLD DANLRGEEKT YVSDEVVSLS SSSDDEEDPL EELGTDSREE VSGEDRDSGE SDMDEDANDS DSSDYVGESS DSSDVESSDS
0301: DFVCSEDEEG GTRDDATCEK NPSEKVYHHK KSRTFRRKHN FDVINLLAKS MLESKDVFKE DIFSWDKIAE VDSREDPVVR ESSSEKVNEH GKPRERRSFH
0401: RVREKNHLNG ESFYGGEKLC DGEETINYST EDSPPLNLRF GCEEPVLIEK TEEEKELDSL WEDMNVALTL EGMHSSTPDK NGDMLCSKGT HDFVLDDEIG
0501: LKCVHCAYVA VEIKDISPAM DKYRPSVNDN KKCSDRKGDP LPNRLEFDAS DPSSFVAPLD NIEGTVWQYV PGIKDTLYPH QQEGFEFIWK NLAGTTKINE
0601: LNSVGVKGSG GCIISHKAGT GKTRLTVVFL QSYLKRFPNS HPMVIAPATL MRTWEDEVRK WNVNIPFYNM NSLQLSGYED AEAVSRLEGN RHHNSIRMVK
0701: LVSWWKQKSI LGISYPLYEK LAANKNTEGM QVFRRMLVEL PGLLVLDEGH TPRNQSSLIW KVLTEVRTEK RIFLSGTLFQ NNFKELSNVL CLARPADKDT
0801: ISSRIHELSK CSQEGEHGRV NEENRIVDLK AMIAHFVHVH EGTILQESLP GLRDCVVVLN PPFQQKKILD RIDTSQNTFE FEHKLSAVSV HPSLYLCCNP
0901: TKKEDLVIGP ATLGTLKRLR LKYEEGVKTK FLIDFIRISG TVKEKVLVYS QYIDTLKLIM EQLIAECDWT EGEQILLMHG KVEQRDRQHM IDNFNKPDSG
1001: SKVLLASTKA CSEGISLVGA SRVVILDVVW NPSVESQAIS RAFRIGQKRA VFIYHLMVKD TSEWNKYCKQ SEKHRISELV FSSTNEKDKP INNEVVSKDR
1101: ILDEMVRHEK LKHIFEKILY HPKKSDMNTS FF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.