Factsheet for AT1G08600.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95047	Canola	nucleus	83.71	83.65
CDX93550	Canola	nucleus	84.25	83.46
KRH34128	Soybean	nucleus	46.99	61.56
VIT_14s0036g01460.t01	Wine grape	nucleus	61.12	61.21
KRG92726	Soybean	nucleus	60.99	60.74
Solyc04g050150.2.1	Tomato	nucleus	47.53	57.77
GSMUA_Achr4P25080_001	Banana	nucleus	43.34	56.83
Solyc04g050160.2.1	Tomato	nucleus	11.76	55.24
GSMUA_Achr4P25070_001	Banana	golgi	9.06	52.96
KXG38419	Sorghum	nucleus	51.05	50.91
TraesCS1D01G143000.1	Wheat	nucleus	50.78	50.3
Zm00001d032801_P005	Maize	nucleus	50.44	50.27
TraesCS1A01G144000.3	Wheat	nucleus	50.85	50.17
HORVU1Hr1G038370.1	Barley	nucleus	50.37	50.07
Bra018612.1-P	Field mustard	nucleus	84.31	48.13
TraesCS1B01G161400.5	Wheat	nucleus	50.78	47.32
AT3G19210.1	Thale cress	nucleus	13.52	21.98
AT1G03750.1	Thale cress	plastid	12.17	20.88
Os07t0692600-01	Rice	mitochondrion	6.42	20.0
AT2G21450.2	Thale cress	nucleus	10.62	19.08
AT2G18760.3	Thale cress	nucleus	15.01	17.82
AT5G63950.1	Thale cress	cytosol	12.51	16.97
AT3G32330.1	Thale cress	cytosol	3.65	16.51
AT2G16390.2	Thale cress	nucleus	9.8	16.27
AT3G42670.4	Thale cress	nucleus	11.29	13.28
AT3G24340.1	Thale cress	nucleus	10.01	13.07
AT5G20420.1	Thale cress	cytosol	10.62	12.45
AT3G31900.1	Thale cress	cytosol	3.11	11.7
AT1G05490.1	Thale cress	mitochondrion, nucleus	11.02	11.56
AT3G32280.1	Thale cress	endoplasmic reticulum, plasma membrane	3.52	10.97
AT3G54280.2	Thale cress	mitochondrion	14.74	10.24
Os02t0161200-01	Rice	nucleus	1.89	6.57
Os07t0692500-01	Rice	cytosol	1.35	3.51
Os07t0692401-00	Rice	mitochondrion	0.47	1.45
KRH77275	Soybean	cytosol	0.07	1.09
KRH28211	Soybean	mitochondrion	0.07	1.09

Protein Annotations

MapMan:12.4.1.3.2	Gene3D:3.40.50.10810	EntrezGene:837382	UniProt:A0A178VZQ9	ProteinID:AAF99756.1	InterPro:ADD
ProteinID:AEE28313.1	ProteinID:AEE28314.1	ProteinID:AEE28315.1	ProteinID:AEE28316.1	ArrayExpress:AT1G08600	EnsemblPlantsGene:AT1G08600
RefSeq:AT1G08600	TAIR:AT1G08600	RefSeq:AT1G08600-TAIR-G	EnsemblPlants:AT1G08600.3	TAIR:AT1G08600.3	Symbol:ATRX
Unigene:At.10206	ncoils:Coil	UniProt:F4HW51	GO:GO:0000166	GO:GO:0000781	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006950	GO:GO:0006974	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009555	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016787	GO:GO:0042393
GO:GO:0043007	GO:GO:0046872	GO:GO:1900049	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR025766	InterPro:IPR038718	RefSeq:NP_001184937.1	RefSeq:NP_001184938.1	RefSeq:NP_001184939.1
RefSeq:NP_172336.4	ProteinID:OAP11800.1	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PO:PO:0000013
PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS51192	PFscan:PS51194	PFscan:PS51533
PANTHER:PTHR10799	PANTHER:PTHR10799:SF843	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF52540	EMBL:U75593	UniParc:UPI0001505780	SEG:seg	:	:

Description

ATRXCHR20 [Source:UniProtKB/TrEMBL;Acc:A0A178VZQ9]

Coordinates

chr1:+:2723677..2733613

Molecular Weight (calculated)

168185.0 Da

IEP (calculated)

5.163

GRAVY (calculated)

-0.609

Length

1479 amino acids

Sequence
(BLAST)

0001: MEANEESLKG KIEKLEGKEV IVESKEDEMD IIIEENREAE QEVMEVKARD GRGEQNDVLM EENNNQGEQK DEEMQDASSR SESSDFNSDE DEQILSRRDD
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRE RRFDLLTKWR KKGGVFLMGY TNFRNLSLGR GVKDLNAARG ICNALRDGPD ILVCDEAHII KNTKADTTQA LKQVKCQRRI
0901: ALTGSPLQNN LMEYYCMVDF VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEQLKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR
1001: ILYQRFLELY GFSDGRTDER MRKNFFAAYQ VLAQILNHPG IPQLRSEDSK NGRRGSIVDI PDDCSSDENI DYNMVTGEKQ RTMNDLQDKV DGYLQKDWWV
1101: DLLQKNNYKV SDFSGKMILL LDILSMSADV GDKALVFSQS IPTLDLIELY LSRVPRHGKQ GKFWKKGKDW YRIDGKTESS ERQKLVDRFN EPDNKRVKCT
1201: LISTRAGSLG INLYAANRVI IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVTKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD
1301: DEKSEAVTEI SKQNEAGHSN LVEQAILWTK KATLSRVGGD KLMENLLQRH GPNWISSFHE HETLLQENEE ERLTKEEKDM AWEVYRRALE WEEVQRVPFS
1401: ESPVVPKPSP STQTEPLPQP KGFNRSRFVN RNCTRIAHQL TLISQGLKVG SSTVCGECGR VIRWEDVIPA SKLSAVIVN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.