Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G144000.3 | Wheat | nucleus | 97.32 | 96.93 |
| HORVU1Hr1G038370.1 | Barley | nucleus | 92.23 | 92.54 |
| TraesCS1B01G161400.5 | Wheat | nucleus | 97.86 | 92.06 |
| Os10t0457700-01 | Rice | nucleus | 69.73 | 78.92 |
| KXG38419 | Sorghum | nucleus | 75.75 | 76.26 |
| Zm00001d032801_P005 | Maize | nucleus | 75.62 | 76.08 |
| GSMUA_Achr4P25080_001 | Banana | nucleus | 44.14 | 58.42 |
| KRH34128 | Soybean | nucleus | 42.13 | 55.71 |
| VIT_14s0036g01460.t01 | Wine grape | nucleus | 54.92 | 55.52 |
| KRG92726 | Soybean | nucleus | 53.18 | 53.47 |
| Solyc04g050150.2.1 | Tomato | nucleus | 43.54 | 53.41 |
| GSMUA_Achr4P25070_001 | Banana | golgi | 8.98 | 52.96 |
| AT1G08600.3 | Thale cress | nucleus | 50.3 | 50.78 |
| Solyc04g050160.2.1 | Tomato | nucleus | 10.05 | 47.62 |
| CDY22674 | Canola | nucleus | 24.38 | 47.27 |
| Bra018612.1-P | Field mustard | nucleus | 49.9 | 28.75 |
| TraesCS6D01G107800.1 | Wheat | endoplasmic reticulum | 5.63 | 25.69 |
| TraesCS1D01G263000.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 11.52 | 25.63 |
| TraesCS2D01G202400.1 | Wheat | plastid | 12.79 | 22.03 |
| TraesCS7D01G144700.1 | Wheat | cytosol | 9.65 | 21.56 |
| TraesCS6D01G300900.1 | Wheat | cytosol | 14.07 | 19.83 |
| TraesCS2D01G568400.1 | Wheat | cytosol | 12.66 | 19.79 |
| TraesCS3D01G082200.2 | Wheat | nucleus | 15.2 | 18.59 |
| TraesCS5D01G344400.1 | Wheat | nucleus | 11.59 | 18.06 |
| TraesCS2D01G189900.1 | Wheat | nucleus | 10.98 | 17.23 |
| TraesCS4D01G279200.1 | Wheat | cytosol | 10.65 | 16.72 |
| TraesCS2D01G143100.1 | Wheat | cytosol | 6.1 | 14.68 |
| TraesCS3D01G231800.1 | Wheat | nucleus | 12.26 | 14.41 |
| TraesCS2D01G053900.1 | Wheat | nucleus | 10.25 | 14.09 |
| TraesCS2D01G087600.1 | Wheat | nucleus | 11.32 | 13.46 |
| TraesCS1D01G245400.1 | Wheat | nucleus | 12.32 | 12.39 |
| TraesCS1D01G450200.1 | Wheat | mitochondrion | 14.33 | 10.34 |
| KRH77275 | Soybean | cytosol | 0.2 | 3.26 |
| KRH28211 | Soybean | mitochondrion | 0.2 | 3.26 |
Protein Annotations
| MapMan:12.4.1.3.2 | Gene3D:3.40.50.10810 | InterPro:ADD | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR025766 | InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51533 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF843 | SMART:SM00487 | SMART:SM00490 |
| InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS1D01G143000 | EnsemblPlants:TraesCS1D01G143000.1 | TIGR:cd00046 |
| TIGR:cd00079 | TIGR:cd11726 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1D:+:198272853..198284942
Molecular Weight (calculated)
169209.0 Da
IEP (calculated)
5.504
GRAVY (calculated)
-0.666
Length
1493 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDVNGKLSDG DLKKTEALHS NGQPVDDVII IESEGDENKV VVETNIIEGP FEEHKEHRCD KTDNSAHEEA SMSSDDDSDS DLYGFLRESE NEQTSESDVE
0101: ETDIEVALPE EKVEELVAEF HYVESKAAEA QESLEKESLE KIEAEVRLEL SERLQGDALD LAVSIEMEQF KKEWSTELDD LEIRSAVLLE ELDAAGVELP
0201: SLYKSIESQA PNVCETEAWK NRTHWVGSQV PEQANQSIRK ADEYLQSCRP VRRKHGRLLE EGASGFLAGK VPVVDDDSVQ CHEKSWSSFN ELIKSNEGAK
0301: TSFGSSNWAS VYLANTPQEA AALGLQFPGV DEVEEIAEVD GAVDDIKCVD EIELSEEQRR KYRKVREEDD AKAIKRLRRY MEKRTDGWCK GNFGLASSSN
0401: GCCKLPLDDG VLDTNSGRPE SEKQKMDKDE VSAELLKRTR EDDVELDHKR SKTVVIESDD DMQMDRKLVL HIKDSEHSSA ELEKGVDIID LDLFPSQSPK
0501: FSDMDLPKAF KCTICTKMLN ASDVHRHPVL DVAVCGSCRF LVIEKNRLEG PVSGGYCTWC VQCEQLLSCS SCKMLFCTKC LLKNLGEKCI SEAKVTGWQC
0601: CCCQPSQLEH LISECDKALS GVESSDLEGD NTSGTETNDP VSKHKRKKKI RRIMDDTELG EETKRKIAME KARQEHLKSM HEQSASKLRS SNTGTSSGAL
0701: SEVFLQDAGD GHIVNPAREE DEEPVRIPSS ISAKLKPHQV AGIIFLWENV IQSVRTVKSG DKGFGCILAH NMGLGKTFQV ITFLYVVMRC AQLGLRTALI
0801: VTPVNVLHNW KKEFTKWQPA ELKPLRVYML EDVPRLKRLY LLNKWRAKGG VLLIGYSSFR NLSLGRHVKE KDTADEISNA LQCGPDILVC DEAHMIKNRK
0901: ADTTHALKQV KTQRRIALTG SPLQNNLMEY YCMVDFVREG FLGSSHEFRN RFQNPIENGQ HTNSTSDDVK IMNQRSHILY EQLKGFVQRM DMNVVKNDLP
1001: PKKVFVITVK LSQLQRKLYR RFLDVHGFSS GTSEKPYQHG GFFAKYQKLA QIWNHPGLLQ MAKEQRGSLR REDAVENFLT DESSSDDNHN IEIQLPNGGK
1101: QKSRTDQRSK KIDFLNEESN WWENLLDDNT FKEADYSGKM VLLLDILATC YELGDKALVF SQNLTTLDLV EFYLSKMQIK GKEGKYWKQG KDWYRLDGST
1201: PSSERQNLVE RFNDPANTKV KCTLISTRAG SLGINLHAAN RVVLLDGSWN PTHDLQAIYR VWRYGQMKPV YAYRLMAHGT MEEKIYKRQV TKEGLAARVV
1301: DRQQVSRTIS KEEMLHLFEF GDEEMLDESG NDTIIDHTKV GTEKLSMPNS TELPVDTLML NLLSDHPRWI AGYHEHEVLL QENEEERLTK EEQDMAWSNF
1401: KQSQQLDAVA RKGAHDSERK PTETNPPPPK VTSRSRQAQQ PKSHSNNQKK CTNLNHMLTL RSHGTKAGCT TSCDECGQNI SWEALNRSDG RLR
0101: ETDIEVALPE EKVEELVAEF HYVESKAAEA QESLEKESLE KIEAEVRLEL SERLQGDALD LAVSIEMEQF KKEWSTELDD LEIRSAVLLE ELDAAGVELP
0201: SLYKSIESQA PNVCETEAWK NRTHWVGSQV PEQANQSIRK ADEYLQSCRP VRRKHGRLLE EGASGFLAGK VPVVDDDSVQ CHEKSWSSFN ELIKSNEGAK
0301: TSFGSSNWAS VYLANTPQEA AALGLQFPGV DEVEEIAEVD GAVDDIKCVD EIELSEEQRR KYRKVREEDD AKAIKRLRRY MEKRTDGWCK GNFGLASSSN
0401: GCCKLPLDDG VLDTNSGRPE SEKQKMDKDE VSAELLKRTR EDDVELDHKR SKTVVIESDD DMQMDRKLVL HIKDSEHSSA ELEKGVDIID LDLFPSQSPK
0501: FSDMDLPKAF KCTICTKMLN ASDVHRHPVL DVAVCGSCRF LVIEKNRLEG PVSGGYCTWC VQCEQLLSCS SCKMLFCTKC LLKNLGEKCI SEAKVTGWQC
0601: CCCQPSQLEH LISECDKALS GVESSDLEGD NTSGTETNDP VSKHKRKKKI RRIMDDTELG EETKRKIAME KARQEHLKSM HEQSASKLRS SNTGTSSGAL
0701: SEVFLQDAGD GHIVNPAREE DEEPVRIPSS ISAKLKPHQV AGIIFLWENV IQSVRTVKSG DKGFGCILAH NMGLGKTFQV ITFLYVVMRC AQLGLRTALI
0801: VTPVNVLHNW KKEFTKWQPA ELKPLRVYML EDVPRLKRLY LLNKWRAKGG VLLIGYSSFR NLSLGRHVKE KDTADEISNA LQCGPDILVC DEAHMIKNRK
0901: ADTTHALKQV KTQRRIALTG SPLQNNLMEY YCMVDFVREG FLGSSHEFRN RFQNPIENGQ HTNSTSDDVK IMNQRSHILY EQLKGFVQRM DMNVVKNDLP
1001: PKKVFVITVK LSQLQRKLYR RFLDVHGFSS GTSEKPYQHG GFFAKYQKLA QIWNHPGLLQ MAKEQRGSLR REDAVENFLT DESSSDDNHN IEIQLPNGGK
1101: QKSRTDQRSK KIDFLNEESN WWENLLDDNT FKEADYSGKM VLLLDILATC YELGDKALVF SQNLTTLDLV EFYLSKMQIK GKEGKYWKQG KDWYRLDGST
1201: PSSERQNLVE RFNDPANTKV KCTLISTRAG SLGINLHAAN RVVLLDGSWN PTHDLQAIYR VWRYGQMKPV YAYRLMAHGT MEEKIYKRQV TKEGLAARVV
1301: DRQQVSRTIS KEEMLHLFEF GDEEMLDESG NDTIIDHTKV GTEKLSMPNS TELPVDTLML NLLSDHPRWI AGYHEHEVLL QENEEERLTK EEQDMAWSNF
1401: KQSQQLDAVA RKGAHDSERK PTETNPPPPK VTSRSRQAQQ PKSHSNNQKK CTNLNHMLTL RSHGTKAGCT TSCDECGQNI SWEALNRSDG RLR
0001: MEANEESLKG KIEKLEGKEV IVESKEDEMD IIIEENREAE QEVMEVKARD GRGEQNDVLM EENNNQGEQK DEEMQDASSR SESSDFNSDE DEQILSRRDD
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRE RRFDLLTKWR KKGGVFLMGY TNFRNLSLGR GVKDLNAARG ICNALRDGPD ILVCDEAHII KNTKADTTQA LKQVKCQRRI
0901: ALTGSPLQNN LMEYYCMVDF VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEQLKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR
1001: ILYQRFLELY GFSDGRTDER MRKNFFAAYQ VLAQILNHPG IPQLRSEDSK NGRRGSIVDI PDDCSSDENI DYNMVTGEKQ RTMNDLQDKV DGYLQKDWWV
1101: DLLQKNNYKV SDFSGKMILL LDILSMSADV GDKALVFSQS IPTLDLIELY LSRVPRHGKQ GKFWKKGKDW YRIDGKTESS ERQKLVDRFN EPDNKRVKCT
1201: LISTRAGSLG INLYAANRVI IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVTKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD
1301: DEKSEAVTEI SKQNEAGHSN LVEQAILWTK KATLSRVGGD KLMENLLQRH GPNWISSFHE HETLLQENEE ERLTKEEKDM AWEVYRRALE WEEVQRVPFS
1401: ESPVVPKPSP STQTEPLPQP KGFNRSRFVN RNCTRIAHQL TLISQGLKVG SSTVCGECGR VIRWEDVIPA SKLSAVIVN
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRE RRFDLLTKWR KKGGVFLMGY TNFRNLSLGR GVKDLNAARG ICNALRDGPD ILVCDEAHII KNTKADTTQA LKQVKCQRRI
0901: ALTGSPLQNN LMEYYCMVDF VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEQLKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR
1001: ILYQRFLELY GFSDGRTDER MRKNFFAAYQ VLAQILNHPG IPQLRSEDSK NGRRGSIVDI PDDCSSDENI DYNMVTGEKQ RTMNDLQDKV DGYLQKDWWV
1101: DLLQKNNYKV SDFSGKMILL LDILSMSADV GDKALVFSQS IPTLDLIELY LSRVPRHGKQ GKFWKKGKDW YRIDGKTESS ERQKLVDRFN EPDNKRVKCT
1201: LISTRAGSLG INLYAANRVI IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVTKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD
1301: DEKSEAVTEI SKQNEAGHSN LVEQAILWTK KATLSRVGGD KLMENLLQRH GPNWISSFHE HETLLQENEE ERLTKEEKDM AWEVYRRALE WEEVQRVPFS
1401: ESPVVPKPSP STQTEPLPQP KGFNRSRFVN RNCTRIAHQL TLISQGLKVG SSTVCGECGR VIRWEDVIPA SKLSAVIVN
Arabidopsis Description
ATRXCHR20 [Source:UniProtKB/TrEMBL;Acc:A0A178VZQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.