Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G105400.1 | Wheat | nucleus | 94.43 | 94.58 |
| TraesCS2A01G089500.1 | Wheat | plastid | 93.95 | 93.58 |
| HORVU2Hr1G014660.2 | Barley | nucleus | 92.6 | 92.01 |
| KXG37026 | Sorghum | nucleus | 63.22 | 64.55 |
| Zm00001d022576_P001 | Maize | golgi, nucleus, plasma membrane | 62.1 | 58.47 |
| GSMUA_Achr8P01860_001 | Banana | nucleus | 38.77 | 45.09 |
| VIT_13s0067g01950.t01 | Wine grape | nucleus | 34.32 | 33.96 |
| Solyc06g050510.2.1 | Tomato | nucleus | 34.55 | 33.72 |
| PGSC0003DMT400061540 | Potato | nucleus | 34.47 | 33.67 |
| AT3G42670.4 | Thale cress | nucleus | 33.04 | 32.99 |
| KRG97679 | Soybean | nucleus | 32.25 | 32.79 |
| AT5G20420.1 | Thale cress | cytosol | 32.4 | 32.28 |
| KRG88505 | Soybean | endoplasmic reticulum, nucleus | 30.81 | 32.12 |
| Bra021058.1-P | Field mustard | nucleus | 32.48 | 32.1 |
| KRH73247 | Soybean | nucleus | 33.36 | 31.98 |
| CDY56857 | Canola | cytosol | 32.01 | 31.78 |
| CDX92463 | Canola | nucleus | 31.93 | 31.7 |
| Bra002302.1-P | Field mustard | cytosol | 31.05 | 31.3 |
| TraesCS4D01G279200.1 | Wheat | cytosol | 17.68 | 23.34 |
| TraesCS5D01G344400.1 | Wheat | nucleus | 17.75 | 23.28 |
| TraesCS2D01G189900.1 | Wheat | nucleus | 17.44 | 23.0 |
| TraesCS2D01G053900.1 | Wheat | nucleus | 17.2 | 19.89 |
| TraesCS2D01G143100.1 | Wheat | cytosol | 9.55 | 19.35 |
| TraesCS3D01G231800.1 | Wheat | nucleus | 19.11 | 18.9 |
| TraesCS6D01G107800.1 | Wheat | endoplasmic reticulum | 4.46 | 17.13 |
| TraesCS1D01G245400.1 | Wheat | nucleus | 19.43 | 16.43 |
| TraesCS1D01G263000.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 8.04 | 15.05 |
| TraesCS2D01G202400.1 | Wheat | plastid | 10.11 | 14.65 |
| TraesCS7D01G144700.1 | Wheat | cytosol | 7.32 | 13.77 |
| Os04t0692750-01 | Rice | cytosol | 10.35 | 13.17 |
| TraesCS2D01G568400.1 | Wheat | cytosol | 9.95 | 13.09 |
| TraesCS6D01G300900.1 | Wheat | cytosol | 9.87 | 11.71 |
| TraesCS1D01G143000.1 | Wheat | nucleus | 13.46 | 11.32 |
| TraesCS3D01G082200.2 | Wheat | nucleus | 10.99 | 11.3 |
| TraesCS1D01G450200.1 | Wheat | mitochondrion | 11.31 | 6.86 |
| Os04t0692700-01 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:12.5.1.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR10799 | PANTHER:PTHR10799:SF792 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N |
| SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS2D01G087600 | EnsemblPlants:TraesCS2D01G087600.1 | TIGR:cd00046 | TIGR:cd00079 | SEG:seg |
Description
No Description!
Coordinates
chr2D:-:37767205..37772192
Molecular Weight (calculated)
142775.0 Da
IEP (calculated)
8.499
GRAVY (calculated)
-0.456
Length
1256 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAEDTLKGGP KGRRSHPISE TPFEAFYDGS WHGVNCIKVR DGGLFVIFIY SGSTVEHNVD GEHLRLRSRR ATYFDCSHVL KPGVDICVQS SHPLQGSPTG
0101: ELKSLMLLSH DARLITIKRN HIEDQCLCLF VIMLHKNQCP DNTENGEVIS DRREQLVTLN NIFLLQKLQP KELHEGSVQW SSAEDCLSHN RSKLLSARFS
0201: QEIAHLVVLS ILNGMEFSIK LVEGNIIYRI IKGGRARCNL DSMSTPPGFG NSMEIVSFQL RNEALCPIIR NIPVTHAKKR NLTEDAGFTM KAELDGQLED
0301: RRFTVKTELD GLLDVFSYEQ VDLRRSKRRK TQAERFTSYD TPNFGRDRWK RCDAPSTKHG NSQRASRRDS PVAVESTYAE VPVNITRKQT SATAFVVKEN
0401: PNSAEGKHKS TARITPVKEK PSSMEVKEES TFEERSPGPH VPRTPAKSKE KNLCPPLSLR RKSFTSSRGL NGNSEPVFGR KRKERICERE YKKMINQCIG
0501: NIQSEMERDF EFNLGVPMMN YDQGFYGEVN FTWPASSADN DSQEEKDGLE EFWEEMDHSL TTLALEKNQD SHSEAVHEAT AGLGKSEENP CDHDCMLDEG
0601: LGLVCRLCNV VCVEIKHIFP QMANGNGYNK ERPGCRNCDP DDLVLDPSLL AILGPEFSEL RGSGNLWSLI PDLEPKLLPH QRNAFEFIWK NLAGSLQLEE
0701: MDNPTASTGG CVVAHTPGSG KTLLLISFLV SYLKVHPRSR PLVLTPKSAI HTWMREFEKW GISLPLHVLH QVDKRGKPMG PIDPRLQAIL SNFRRPNWKS
0801: ICLVDRLDKL CKWHEHPSVL LMTYSSFLRL AKQDSRMPQR AFMAQVLINN PGLLILDEGH NPRSNKSKLR RVLMKVKTEF RILMSGTVFQ NNFEEYFNTL
0901: SLARPRFVDD VMTALVPERK KETRGRRAKH REAVARRIFV DRVGQMIESS DNWDRQGGIS LLNKLTCGFI DSFEGSKLRS LPGIHVYTIF MKPTEIQEDI
1001: LSRISMATSC GGRYLLEVEL LITIASIHPW LIKTTKSSST YFTPEEIHKV DRYKRDFAVG CKARFVIDLL HKSSYRGERV LIFCHNVSPI SFLVELIENV
1101: FGWRLGEEVL VLQGDQELPV RSDVMDKFNT DSQGKRKVLI ASTTACAEGI SLTGASRLVM LDSEWNHSKT RQAIARAFRP GQERTVYVYL LVASGTWEED
1201: KYSRNRRKAW MAKMVFHGRY FDVPLRNAVT AIDDGLLKEL ADEDKTKTFH MIVKQD
0101: ELKSLMLLSH DARLITIKRN HIEDQCLCLF VIMLHKNQCP DNTENGEVIS DRREQLVTLN NIFLLQKLQP KELHEGSVQW SSAEDCLSHN RSKLLSARFS
0201: QEIAHLVVLS ILNGMEFSIK LVEGNIIYRI IKGGRARCNL DSMSTPPGFG NSMEIVSFQL RNEALCPIIR NIPVTHAKKR NLTEDAGFTM KAELDGQLED
0301: RRFTVKTELD GLLDVFSYEQ VDLRRSKRRK TQAERFTSYD TPNFGRDRWK RCDAPSTKHG NSQRASRRDS PVAVESTYAE VPVNITRKQT SATAFVVKEN
0401: PNSAEGKHKS TARITPVKEK PSSMEVKEES TFEERSPGPH VPRTPAKSKE KNLCPPLSLR RKSFTSSRGL NGNSEPVFGR KRKERICERE YKKMINQCIG
0501: NIQSEMERDF EFNLGVPMMN YDQGFYGEVN FTWPASSADN DSQEEKDGLE EFWEEMDHSL TTLALEKNQD SHSEAVHEAT AGLGKSEENP CDHDCMLDEG
0601: LGLVCRLCNV VCVEIKHIFP QMANGNGYNK ERPGCRNCDP DDLVLDPSLL AILGPEFSEL RGSGNLWSLI PDLEPKLLPH QRNAFEFIWK NLAGSLQLEE
0701: MDNPTASTGG CVVAHTPGSG KTLLLISFLV SYLKVHPRSR PLVLTPKSAI HTWMREFEKW GISLPLHVLH QVDKRGKPMG PIDPRLQAIL SNFRRPNWKS
0801: ICLVDRLDKL CKWHEHPSVL LMTYSSFLRL AKQDSRMPQR AFMAQVLINN PGLLILDEGH NPRSNKSKLR RVLMKVKTEF RILMSGTVFQ NNFEEYFNTL
0901: SLARPRFVDD VMTALVPERK KETRGRRAKH REAVARRIFV DRVGQMIESS DNWDRQGGIS LLNKLTCGFI DSFEGSKLRS LPGIHVYTIF MKPTEIQEDI
1001: LSRISMATSC GGRYLLEVEL LITIASIHPW LIKTTKSSST YFTPEEIHKV DRYKRDFAVG CKARFVIDLL HKSSYRGERV LIFCHNVSPI SFLVELIENV
1101: FGWRLGEEVL VLQGDQELPV RSDVMDKFNT DSQGKRKVLI ASTTACAEGI SLTGASRLVM LDSEWNHSKT RQAIARAFRP GQERTVYVYL LVASGTWEED
1201: KYSRNRRKAW MAKMVFHGRY FDVPLRNAVT AIDDGLLKEL ADEDKTKTFH MIVKQD
0001: MKRKHYFEFN HPFNPCPFEV FCWGTWKAVE YLRIENGTMT MRLLENGQVL DDIKPFQRLR IRSRKATLID CTSFLRPGID VCVLYQRDEE TPEPVWVDAR
0101: VLSIERKPHE SECLCTFHVS VYIDQGCIGL EKHRMNKVPV LVGLNEIAIL QKFCKEQSLD RYYRWRYSED CSSLVKTRLN LGKFLPDLTW LLVTSVLKNI
0201: VFQIRTVHEK MVYQIVTDED CEGSSSSLSA MNITVEDGVV MSKVVLFNPA EDTCQDSDVK EEIEEEVMEL RRSKRRSGRP ERYGDSEIQP DSKDGWVRMM
0301: PYRYNIWNVS SDDDDEEEDC EDDKDTDDDL YLPLSHLLRK KGSKKGFSKD KQREIVLVDK TERKKRKKTE GFSRSCELSV IPFTPVFEPI PLEQFGLNAN
0401: SLCGGVSGNL MDEIDKYRSK AAKYGKKKKK KIEMEEMESD LGWNGPIGNV VHKRNGPHSR IRSVSRETGV SEEPQIYKKR TLSAGAYNKL IDSYMSRIDS
0501: TIAAKDKATN VVEQWQGLKN PASFSIEAEE RLSEEEEDDG ETSENEILWR EMELCLASSY ILDDHEVRVD NEAFHKATCD CEHDYELNEE IGMCCRLCGH
0601: VGTEIKHVSA PFARHKKWTT ETKQINEDDI NTTIVNQDGV ESHTFTIPVA SSDMPSAEES DNVWSLIPQL KRKLHLHQKK AFEFLWKNLA GSVVPAMMDP
0701: SSDKIGGCVV SHTPGAGKTF LIIAFLASYL KIFPGKRPLV LAPKTTLYTW YKEFIKWEIP VPVHLLHGRR TYCMSKEKTI QFEGIPKPSQ DVMHVLDCLD
0801: KIQKWHAQPS VLVMGYTSFL TLMREDSKFA HRKYMAKVLR ESPGLLVLDE GHNPRSTKSR LRKALMKVDT DLRILLSGTL FQNNFCEYFN TLCLARPKFV
0901: HEVLVELDKK FQTNQAEQKA PHLLENRARK FFLDIIAKKI DTKVGDERLQ GLNMLRNMTS GFIDNYEGSG SGSGDVLPGL QIYTLLMNST DVQHKSLTKL
1001: QNIMSTYHGY PLELELLITL AAIHPWLVKT TTCCAKFFNP QELLEIEKLK HDAKKGSKVM FVLNLVFRVV KREKILIFCH NIAPIRLFLE LFENVFRWKR
1101: GRELLTLTGD LELFERGRVI DKFEEPGGQS RVLLASITAC AEGISLTAAS RVIMLDSEWN PSKTKQAIAR AFRPGQQKVV YVYQLLSRGT LEEDKYRRTT
1201: WKEWVSSMIF SEEFVEDPSQ WQAEKIEDDV LREIVEEDKV KSFHMIMKNE KASTGG
0101: VLSIERKPHE SECLCTFHVS VYIDQGCIGL EKHRMNKVPV LVGLNEIAIL QKFCKEQSLD RYYRWRYSED CSSLVKTRLN LGKFLPDLTW LLVTSVLKNI
0201: VFQIRTVHEK MVYQIVTDED CEGSSSSLSA MNITVEDGVV MSKVVLFNPA EDTCQDSDVK EEIEEEVMEL RRSKRRSGRP ERYGDSEIQP DSKDGWVRMM
0301: PYRYNIWNVS SDDDDEEEDC EDDKDTDDDL YLPLSHLLRK KGSKKGFSKD KQREIVLVDK TERKKRKKTE GFSRSCELSV IPFTPVFEPI PLEQFGLNAN
0401: SLCGGVSGNL MDEIDKYRSK AAKYGKKKKK KIEMEEMESD LGWNGPIGNV VHKRNGPHSR IRSVSRETGV SEEPQIYKKR TLSAGAYNKL IDSYMSRIDS
0501: TIAAKDKATN VVEQWQGLKN PASFSIEAEE RLSEEEEDDG ETSENEILWR EMELCLASSY ILDDHEVRVD NEAFHKATCD CEHDYELNEE IGMCCRLCGH
0601: VGTEIKHVSA PFARHKKWTT ETKQINEDDI NTTIVNQDGV ESHTFTIPVA SSDMPSAEES DNVWSLIPQL KRKLHLHQKK AFEFLWKNLA GSVVPAMMDP
0701: SSDKIGGCVV SHTPGAGKTF LIIAFLASYL KIFPGKRPLV LAPKTTLYTW YKEFIKWEIP VPVHLLHGRR TYCMSKEKTI QFEGIPKPSQ DVMHVLDCLD
0801: KIQKWHAQPS VLVMGYTSFL TLMREDSKFA HRKYMAKVLR ESPGLLVLDE GHNPRSTKSR LRKALMKVDT DLRILLSGTL FQNNFCEYFN TLCLARPKFV
0901: HEVLVELDKK FQTNQAEQKA PHLLENRARK FFLDIIAKKI DTKVGDERLQ GLNMLRNMTS GFIDNYEGSG SGSGDVLPGL QIYTLLMNST DVQHKSLTKL
1001: QNIMSTYHGY PLELELLITL AAIHPWLVKT TTCCAKFFNP QELLEIEKLK HDAKKGSKVM FVLNLVFRVV KREKILIFCH NIAPIRLFLE LFENVFRWKR
1101: GRELLTLTGD LELFERGRVI DKFEEPGGQS RVLLASITAC AEGISLTAAS RVIMLDSEWN PSKTKQAIAR AFRPGQQKVV YVYQLLSRGT LEEDKYRRTT
1201: WKEWVSSMIF SEEFVEDPSQ WQAEKIEDDV LREIVEEDKV KSFHMIMKNE KASTGG
Arabidopsis Description
CHR38Chromatin remodeling 38 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.