Factsheet for TraesCS5D01G344400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G340400.1	Wheat	nucleus	98.33	98.33
HORVU5Hr1G085320.1	Barley	plastid	93.11	91.49
Os07t0434500-01	Rice	cytoskeleton, cytosol, nucleus	53.03	75.6
TraesCS2D01G189900.1	Wheat	nucleus	74.53	75.0
Os06t0255700-01	Rice	cytosol	66.28	67.12
Os08t0243866-00	Rice	endoplasmic reticulum	42.8	63.47
Zm00001d024677_P003	Maize	cytosol	58.87	59.37
KXG24379	Sorghum	cytosol	60.02	59.28
Zm00001d049605_P037	Maize	cytosol	60.02	58.85
Os08t0289400-00	Rice	cytosol, nucleus	31.52	57.2
VIT_06s0004g08480.t01	Wine grape	mitochondrion, plastid	38.31	53.89
VIT_03s0038g04290.t01	Wine grape	nucleus	11.8	51.13
KRH27453	Soybean	cytosol	43.63	47.34
Bra021841.1-P	Field mustard	cytosol	36.43	45.68
AT2G16390.2	Thale cress	nucleus	41.65	44.78
CDX89710	Canola	nucleus	39.46	43.75
VIT_03s0038g00030.t01	Wine grape	nucleus	42.69	43.01
Solyc01g109970.2.1	Tomato	extracellular	40.61	42.89
KRH20806	Soybean	cytosol	42.07	42.29
PGSC0003DMT400079488	Potato	nucleus	40.4	41.84
TraesCS4D01G279200.1	Wheat	cytosol	40.29	40.59
GSMUA_Achr6P04530_001	Banana	nucleus	37.27	40.25
Bra000888.1-P	Field mustard	cytosol	16.91	35.29
TraesCS2D01G143100.1	Wheat	cytosol	22.44	34.68
TraesCS2D01G053900.1	Wheat	nucleus	20.46	18.05
TraesCS2D01G087600.1	Wheat	nucleus	23.28	17.75
TraesCS3D01G231800.1	Wheat	nucleus	22.55	17.01
TraesCS1D01G263000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	11.48	16.39
TraesCS6D01G107800.1	Wheat	endoplasmic reticulum	5.32	15.6
TraesCS1D01G245400.1	Wheat	nucleus	22.86	14.75
TraesCS2D01G202400.1	Wheat	plastid	12.84	14.19
TraesCS2D01G568400.1	Wheat	cytosol	13.15	13.19
TraesCS7D01G144700.1	Wheat	cytosol	8.98	12.87
TraesCS6D01G300900.1	Wheat	cytosol	13.05	11.8
TraesCS1D01G143000.1	Wheat	nucleus	18.06	11.59
TraesCS3D01G082200.2	Wheat	nucleus	12.73	9.99
TraesCS1D01G450200.1	Wheat	mitochondrion	12.73	5.9

Protein Annotations

MapMan:12.4.1.3.3	MapMan:12.5.1.14.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR038718	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF807	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf
InterPro:SNF2_N	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS5D01G344400	EnsemblPlants:TraesCS5D01G344400.1	TIGR:cd00046	TIGR:cd00079
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:431909587..431915557

Molecular Weight (calculated)

108112.0 Da

IEP (calculated)

5.550

GRAVY (calculated)

-0.478

Length

958 amino acids

Sequence
(BLAST)

001: MDVAPGEDPP ADPSGMYYRR KRKCSDPINN LSLTGNRVHS WGCGSVTEEW DRLYAQKVQL LTFLSTLPEP ALSYGPSAET NMANSIEQRE EKKSVIVLDS
101: DDEDESTEAH KHLTPEKNKQ LTPEKNKHLI PSEQAGALMR VVTEGIDEVI NETMPVRDQN SQIVPYSPSA TLVNQYPVTS YQPSAVLFER VILQKRPEEE
201: RIHDLAVATH KEKIAETQVL PPLPKERKKR KVDPSSQVDG DVEIVPRKRK GKNEANPAVF DLPSERYNPA GEDEPVEEDE PMGEDEPMEE EHIQEQESDG
301: LEDFWNEYSV ALESSKLDTL EEAANEKEVG EKEVDNACNH DIQIHEDLGH VCRVCGLIVK RADTIIDYQW RKASRSRSYF SEKRSKDSDE IVTGDVRVAE
401: ELNALDIAIH PRHEKQMRPH QLAGFHFLVK NLVSDKPGGC ILAHAPGSGK TFMLISFIQS FLAKYPSGRP LVVLPKGILG TWKREFQQWQ VEDIPLYDLY
501: SVKTRAEQLE ILKSWEAKRS ILLVGYTQFS WIISSDEGGA VAAGCQERLL KVPNLLIMDE GHLPRTESTN VLESLQRVQT PRKVVLSGTL FQNHVSEVFN
601: IMNLVRPKFL KKDSSRPIVA RIMSQVSISG RRISKEDTDK FNESVEETLL HDGDITRKVN VIRSLRELTK DVLHYYKGDI LDDLPGLVDF SVFLKLSPKQ
701: KEIVHKLEAY EKFKKNAVGT ALYMHPCLSE MSEVAAADRA SNLTDAAVDS LVQSINVADG VKARFFTNIL ALAESAGEKV LAFSQYLLPM KFLERLLVKT
801: RGWHVGKEMF VIRGDSKCTM EERELTVAQF NNSADAKVLF GSIKACGEGI SLVGASRVVI LDVHLNPSVT RQAIGRAFRP GQQKKVFVYR LVAADSPEEN
901: THKTAVKKEV IPKLWFEWSE QRCTSEGFQL NEIDIDDCGD ELLDNRAMRQ DIKALYTR

Best Arabidopsis Sequence Match ( AT2G16390.1 )
(BLAST)

001: MGFVYIVMTG YYKNVHKRKQ NQVDDGPEAK RVKSSAKVID YSNPFAVSNM LEALDSGKFG SVSKELEEIA DMRMDLVKRS IWLYPSLAYT VFEAEKTMDN
101: QQVVEGVINL DDDDDDDTDV EKKALCVVPS SSEIVLLDSD DEDNERQRPM YQFQSTLVQH QKNQGDVTPL IPQCSFEEVD LGRGKEMPSA IKAIVEGQTS
201: RGKVLPIENG VVNEKGVYVG VEEDDSDNES EAADEDLGNI WNEMALSIEC SKDVARETSH KEKADVVEDC EHSFILKDDM GYVCRVCGVI EKSILEIIDV
301: QFTKAKRNTR TYASETRTKR FGESDNELKF SEEGLMIGGL AAHPTHAAEM KPHQIEGFQF LCSNLVADDP GGCIMAHAPG SGKTFMIISF MQSFLAKYPQ
401: AKPLVVLPKG ILPTWKKEFV RWQVEDIPLL DFYSAKAENR AQQLSILKQW MEKKSILFLG YQQFSTIVCD DTTDSLSCQE ILLKVPSILI LDEGHTPRNE
501: DTNLLQSLAQ VQTPRKVVLS GTLYQNHVKE VFNILNLVRP KFLKLDTSKS AVKRILAYTP CDVRGRLTGS NSDMASMFNE TVEHTLQKSE DFTVKIKVIQ
601: DLREMTKKVL HYYKGDFLDE LPGLADFTVV LNLSPKQLNE VKKLRREKRK FKVSAVGSAI YLHPKLKVFS DKSDDVSDTT MDEMVEKLDL NEGVKAKFFL
701: NLINLCDSAG EKLLVFSQYL IPLKFLERLA ALAKGWKLGK EVFVLTGNTS SEQREWSMET FNSSPDAKIF FGSIKACGEG ISLVGASRIL ILDVPLNPSV
801: TRQAIGRAFR PGQKKMVHAY RLIAGSSPEE EDHNTCFKKE VISKMWFEWN EYCGYQNFEV ETIDVDEAGD TFLESPALRE DIRVLYKR

Arabidopsis Description

DRD1SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.