Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G16390.2 | Thale cress | nucleus | 79.28 | 76.88 |
| VIT_06s0004g08480.t01 | Wine grape | mitochondrion, plastid | 46.06 | 58.44 |
| KRH27453 | Soybean | cytosol | 55.9 | 54.7 |
| Os07t0434500-01 | Rice | cytoskeleton, cytosol, nucleus | 39.35 | 50.6 |
| Solyc01g109970.2.1 | Tomato | extracellular | 51.5 | 49.06 |
| KRH20806 | Soybean | cytosol | 54.05 | 49.0 |
| CDY67491 | Canola | cytosol | 8.91 | 48.73 |
| PGSC0003DMT400079488 | Potato | nucleus | 51.62 | 48.22 |
| VIT_03s0038g00030.t01 | Wine grape | nucleus | 53.01 | 48.16 |
| CDY37734 | Canola | nucleus | 41.78 | 47.75 |
| HORVU2Hr1G024970.1 | Barley | nucleus | 17.71 | 46.79 |
| VIT_03s0038g04290.t01 | Wine grape | nucleus | 11.92 | 46.61 |
| CDY23754 | Canola | cytosol | 41.2 | 46.17 |
| Os08t0243866-00 | Rice | endoplasmic reticulum | 33.91 | 45.36 |
| TraesCS2B01G208700.1 | Wheat | cytosol | 44.44 | 41.92 |
| TraesCS2D01G189900.1 | Wheat | nucleus | 44.21 | 40.13 |
| TraesCS5A01G340400.1 | Wheat | nucleus | 44.1 | 39.77 |
| CDY16534 | Canola | nucleus | 20.02 | 39.68 |
| TraesCS5D01G344400.1 | Wheat | nucleus | 43.75 | 39.46 |
| Os06t0255700-01 | Rice | cytosol | 42.94 | 39.22 |
| HORVU2Hr1G034330.2 | Barley | mitochondrion, nucleus, plastid | 43.98 | 38.97 |
| HORVU5Hr1G085320.1 | Barley | plastid | 43.63 | 38.67 |
| KXG24379 | Sorghum | cytosol | 42.94 | 38.25 |
| Zm00001d024677_P003 | Maize | cytosol | 41.55 | 37.79 |
| Zm00001d049605_P037 | Maize | cytosol | 42.36 | 37.46 |
| TraesCS4D01G279200.1 | Wheat | cytosol | 40.86 | 37.12 |
| TraesCS4B01G280600.1 | Wheat | nucleus | 40.97 | 37.07 |
| TraesCS2B01G164300.3 | Wheat | nucleus | 40.86 | 36.92 |
| TraesCS2A01G182200.1 | Wheat | plastid | 44.33 | 36.86 |
| TraesCS2A01G140400.2 | Wheat | cytosol | 40.74 | 36.82 |
| EER92800 | Sorghum | nucleus, plastid | 39.81 | 36.4 |
| GSMUA_Achr6P04530_001 | Banana | nucleus | 37.27 | 36.3 |
| TraesCS4A01G022800.1 | Wheat | mitochondrion, plastid | 40.74 | 35.34 |
| HORVU4Hr1G074230.3 | Barley | nucleus, plastid | 40.62 | 34.21 |
| Os03t0165266-00 | Rice | nucleus | 41.32 | 33.24 |
| Os08t0289400-00 | Rice | cytosol, nucleus | 18.17 | 29.73 |
| TraesCS2D01G143100.1 | Wheat | cytosol | 21.18 | 29.52 |
| CDY29038 | Canola | nucleus | 5.44 | 26.7 |
| CDX77430 | Canola | nucleus | 20.37 | 26.15 |
| CDY59589 | Canola | nucleus | 5.32 | 26.14 |
| CDX93009 | Canola | nucleus | 21.88 | 19.48 |
| CDX94823 | Canola | nucleus | 21.76 | 19.3 |
| CDY66441 | Canola | nucleus | 22.34 | 18.68 |
| CDX78226 | Canola | cytosol | 3.36 | 15.68 |
| CDX92463 | Canola | nucleus | 22.69 | 15.49 |
| CDY47279 | Canola | nucleus | 23.96 | 15.48 |
| CDY56857 | Canola | cytosol | 22.34 | 15.26 |
| CDY10115 | Canola | nucleus | 23.73 | 14.87 |
| CDX99258 | Canola | nucleus | 13.19 | 12.57 |
| CDX92308 | Canola | nucleus | 13.19 | 12.51 |
| CDX84469 | Canola | cytosol, mitochondrion, nucleus, plastid | 14.81 | 11.17 |
| CDY43772 | Canola | mitochondrion | 14.35 | 10.69 |
| CDX95047 | Canola | nucleus | 17.13 | 10.0 |
| CDX93550 | Canola | nucleus | 17.13 | 9.91 |
| CDX92882 | Canola | nucleus | 12.85 | 9.83 |
| CDY51705 | Canola | nucleus | 12.85 | 9.58 |
| CDY22674 | Canola | nucleus | 8.22 | 9.22 |
| CDY37413 | Canola | mitochondrion, nucleus | 13.08 | 7.05 |
| CDY32510 | Canola | mitochondrion, nucleus | 13.08 | 7.04 |
| CDX73492 | Canola | mitochondrion | 13.54 | 5.62 |
| CDX78225 | Canola | mitochondrion | 10.53 | 4.51 |
| CDY06321 | Canola | nucleus | 1.97 | 2.92 |
| CDY13196 | Canola | cytosol, nucleus, plastid | 0.23 | 0.51 |
Protein Annotations
| MapMan:12.4.1.3.3 | MapMan:12.5.1.14.1 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:A0A078DKL1 | EnsemblPlants:CDX89710 |
| ProteinID:CDX89710 | ProteinID:CDX89710.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00150118001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 |
| InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 |
| PANTHER:PTHR10799:SF807 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| UniParc:UPI0004EDCC8E | SEG:seg | : | : | : | : |
Description
BnaC03g46240D
Coordinates
chrLK031860:+:1007429..1011043
Molecular Weight (calculated)
96265.4 Da
IEP (calculated)
5.222
GRAVY (calculated)
-0.287
Length
864 amino acids
Sequence
(BLAST)
(BLAST)
001: MEILQPTSNG YRKRKPDDAL SLNSEAKRLR NSSKVTDFSQ PFAVSNMLEA LDGGKFGSVT KELEEVANLR MELVKRCVWL YPSLAHTVFG ADDGQELMSL
101: ENQLALDSVI DLDGGDDASK KALCVVPSTE IVILDSDDDE DDVASEKPKY PFQSSLVQHQ KSQGDVLPVT PQFAFEEVVL GKGKEMSSAI TALVEGQSSR
201: GNLLAIENGM AIDKDVYVGE RKREKVLAIE NGVVNDKGVY VGVEDDESGD ESEAADEDLG NIWSEMAMSI VCSKDVETSR NESKTDEVED CEHSFILKDD
301: MGYVCRVCGV IDKSILDIID VNFSKAKRST RTYASEARMK KFGESDFEIK LSEEGLMIGG LSAHPTHANK MKPHQIEGFQ FLCSNLVADE PGGCIMAHAP
401: GSGKTFMIIS FMQSFLAKYP QAKPLVVLPK GILSTWKRDI LKQWMEKKSI LFLGYKQFST IVCDDTSVDS RSCQEILLKV PSILILDEGH TPRNEDTNVL
501: QSLAQVQTPR KVVLSGTLYQ NHVKEVFNIL NLVRPKFLKL DTSKSIVKRI LSRAPISDVR SHLGGSSDVS AAFNEIVEHT LQKCQDFKMK INMIQDLREM
601: TKKVLHYYKG DFLDELPGLD DFTVVLNLSP RQLTEVKKLR REKRKFKVSA VGSAIYLHPK LNAFSEKTDN VSDTTMDEML EKLDVNEGVK AKFFLNLIDL
701: CDSAGEKLLV FSQYLVPLKF LERLAALAKG WKLGKEVFVL TGESSSEQRE LSMERFNNSP DAKVFFGSIR ACGEGISLVG ASRILILDVP LNPSVTRQAI
801: GRAFRPGQTK KVHAYRLIAG SSPEEEDHNT CFKKEVETID VDDAGDMFLE SPALREDIRV LYKR
101: ENQLALDSVI DLDGGDDASK KALCVVPSTE IVILDSDDDE DDVASEKPKY PFQSSLVQHQ KSQGDVLPVT PQFAFEEVVL GKGKEMSSAI TALVEGQSSR
201: GNLLAIENGM AIDKDVYVGE RKREKVLAIE NGVVNDKGVY VGVEDDESGD ESEAADEDLG NIWSEMAMSI VCSKDVETSR NESKTDEVED CEHSFILKDD
301: MGYVCRVCGV IDKSILDIID VNFSKAKRST RTYASEARMK KFGESDFEIK LSEEGLMIGG LSAHPTHANK MKPHQIEGFQ FLCSNLVADE PGGCIMAHAP
401: GSGKTFMIIS FMQSFLAKYP QAKPLVVLPK GILSTWKRDI LKQWMEKKSI LFLGYKQFST IVCDDTSVDS RSCQEILLKV PSILILDEGH TPRNEDTNVL
501: QSLAQVQTPR KVVLSGTLYQ NHVKEVFNIL NLVRPKFLKL DTSKSIVKRI LSRAPISDVR SHLGGSSDVS AAFNEIVEHT LQKCQDFKMK INMIQDLREM
601: TKKVLHYYKG DFLDELPGLD DFTVVLNLSP RQLTEVKKLR REKRKFKVSA VGSAIYLHPK LNAFSEKTDN VSDTTMDEML EKLDVNEGVK AKFFLNLIDL
701: CDSAGEKLLV FSQYLVPLKF LERLAALAKG WKLGKEVFVL TGESSSEQRE LSMERFNNSP DAKVFFGSIR ACGEGISLVG ASRILILDVP LNPSVTRQAI
801: GRAFRPGQTK KVHAYRLIAG SSPEEEDHNT CFKKEVETID VDDAGDMFLE SPALREDIRV LYKR
001: MDILQTDQAS SNGYYKNVHK RKQNQVDDGP EAKRVKSSAK VIDYSNPFAV SNMLEALDSG KFGSVSKELE EIADMRMDLV KRSIWLYPSL AYTVFEAEKT
101: MDNQQVVEGV INLDDDDDDD TDVEKKALCV VPSSSEIVLL DSDDEDNERQ RPMYQFQSTL VQHQKNQGDV TPLIPQCSFE EVDLGRGKEM PSAIKAIVEG
201: QTSRGKVLPI ENGVVNEKGV YVGVEEDDSD NESEAADEDL GNIWNEMALS IECSKDVARE TSHKEKADVV EDCEHSFILK DDMGYVCRVC GVIEKSILEI
301: IDVQFTKAKR NTRTYASETR TKRFGESDNE LKFSEEGLMI GGLAAHPTHA AEMKPHQIEG FQFLCSNLVA DDPGGCIMAH APGSGKTFMI ISFMQSFLAK
401: YPQAKPLVVL PKGILPTWKK EFVRWQVEDI PLLDFYSAKA ENRAQQLSIL KQWMEKKSIL FLGYQQFSTI VCDDTTDSLS CQEILLKVPS ILILDEGHTP
501: RNEDTNLLQS LAQVQTPRKV VLSGTLYQNH VKEVFNILNL VRPKFLKLDT SKSAVKRILA YTPCDVRGRL TGSNSDMASM FNETVEHTLQ KSEDFTVKIK
601: VIQDLREMTK KVLHYYKGDF LDELPGLADF TVVLNLSPKQ LNEVKKLRRE KRKFKVSAVG SAIYLHPKLK VFSDKSDDVS DTTMDEMVEK LDLNEGVKAK
701: FFLNLINLCD SAGEKLLVFS QYLIPLKFLE RLAALAKGWK LGKEVFVLTG NTSSEQREWS METFNSSPDA KIFFGSIKAC GEGISLVGAS RILILDVPLN
801: PSVTRQAIGR AFRPGQKKMV HAYRLIAGSS PEEEDHNTCF KKEVISKMWF EWNEYCGYQN FEVETIDVDE AGDTFLESPA LREDIRVLYK R
101: MDNQQVVEGV INLDDDDDDD TDVEKKALCV VPSSSEIVLL DSDDEDNERQ RPMYQFQSTL VQHQKNQGDV TPLIPQCSFE EVDLGRGKEM PSAIKAIVEG
201: QTSRGKVLPI ENGVVNEKGV YVGVEEDDSD NESEAADEDL GNIWNEMALS IECSKDVARE TSHKEKADVV EDCEHSFILK DDMGYVCRVC GVIEKSILEI
301: IDVQFTKAKR NTRTYASETR TKRFGESDNE LKFSEEGLMI GGLAAHPTHA AEMKPHQIEG FQFLCSNLVA DDPGGCIMAH APGSGKTFMI ISFMQSFLAK
401: YPQAKPLVVL PKGILPTWKK EFVRWQVEDI PLLDFYSAKA ENRAQQLSIL KQWMEKKSIL FLGYQQFSTI VCDDTTDSLS CQEILLKVPS ILILDEGHTP
501: RNEDTNLLQS LAQVQTPRKV VLSGTLYQNH VKEVFNILNL VRPKFLKLDT SKSAVKRILA YTPCDVRGRL TGSNSDMASM FNETVEHTLQ KSEDFTVKIK
601: VIQDLREMTK KVLHYYKGDF LDELPGLADF TVVLNLSPKQ LNEVKKLRRE KRKFKVSAVG SAIYLHPKLK VFSDKSDDVS DTTMDEMVEK LDLNEGVKAK
701: FFLNLINLCD SAGEKLLVFS QYLIPLKFLE RLAALAKGWK LGKEVFVLTG NTSSEQREWS METFNSSPDA KIFFGSIKAC GEGISLVGAS RILILDVPLN
801: PSVTRQAIGR AFRPGQKKMV HAYRLIAGSS PEEEDHNTCF KKEVISKMWF EWNEYCGYQN FEVETIDVDE AGDTFLESPA LREDIRVLYK R
Arabidopsis Description
DRD1SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.