Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024192.1-P | Field mustard | nucleus | 99.22 | 99.05 |
| CDX92882 | Canola | nucleus | 95.25 | 97.79 |
| KRH32203 | Soybean | cytosol, mitochondrion, nucleus | 19.41 | 81.52 |
| AT2G18760.3 | Thale cress | nucleus | 86.89 | 80.82 |
| Os01t0102800-01 | Rice | cytosol, nucleus, plastid | 54.36 | 68.7 |
| VIT_07s0005g03670.t01 | Wine grape | nucleus | 68.77 | 64.96 |
| KRH19578 | Soybean | nucleus | 68.25 | 64.57 |
| PGSC0003DMT400026641 | Potato | nucleus | 67.56 | 64.55 |
| Solyc09g066480.2.1 | Tomato | nucleus | 67.04 | 64.06 |
| GSMUA_AchrUn_... | Banana | cytosol | 59.88 | 62.69 |
| EES02658 | Sorghum | nucleus | 64.71 | 62.09 |
| HORVU3Hr1G014660.2 | Barley | nucleus | 63.68 | 60.49 |
| TraesCS3D01G082200.2 | Wheat | nucleus | 63.5 | 60.28 |
| TraesCS3A01G081900.1 | Wheat | nucleus | 63.59 | 59.72 |
| Zm00001d040203_P003 | Maize | cytosol | 63.33 | 58.39 |
| TraesCS3B01G097000.1 | Wheat | nucleus | 63.5 | 57.64 |
| CDX78226 | Canola | cytosol | 4.83 | 30.27 |
| CDX84469 | Canola | cytosol, mitochondrion, nucleus, plastid | 21.48 | 21.73 |
| CDY43772 | Canola | mitochondrion | 21.4 | 21.38 |
| CDX92308 | Canola | nucleus | 16.31 | 20.75 |
| CDX99258 | Canola | nucleus | 16.22 | 20.73 |
| CDX77430 | Canola | nucleus | 10.7 | 18.43 |
| CDY59589 | Canola | nucleus | 2.67 | 17.61 |
| CDY29038 | Canola | nucleus | 2.59 | 17.05 |
| CDX95047 | Canola | nucleus | 18.9 | 14.8 |
| CDX93550 | Canola | nucleus | 18.81 | 14.6 |
| CDX93009 | Canola | nucleus | 11.73 | 14.02 |
| CDY37734 | Canola | nucleus | 9.06 | 13.89 |
| CDY23754 | Canola | cytosol | 9.23 | 13.88 |
| CDX94823 | Canola | nucleus | 11.56 | 13.76 |
| CDY66441 | Canola | nucleus | 11.91 | 13.36 |
| CDY67491 | Canola | cytosol | 1.81 | 13.29 |
| CDY37413 | Canola | mitochondrion, nucleus | 18.29 | 13.23 |
| CDY32510 | Canola | mitochondrion, nucleus | 18.12 | 13.08 |
| CDY22674 | Canola | nucleus | 8.54 | 12.86 |
| CDX89710 | Canola | nucleus | 9.58 | 12.85 |
| CDY56857 | Canola | cytosol | 12.34 | 11.3 |
| CDX92463 | Canola | nucleus | 12.17 | 11.15 |
| CDX73492 | Canola | mitochondrion | 18.9 | 10.52 |
| CDY47279 | Canola | nucleus | 11.82 | 10.25 |
| CDY10115 | Canola | nucleus | 11.91 | 10.01 |
| CDY16534 | Canola | nucleus | 3.45 | 9.17 |
| CDX78225 | Canola | mitochondrion | 14.41 | 8.27 |
| CDY06321 | Canola | nucleus | 2.67 | 5.33 |
| CDY13196 | Canola | cytosol, nucleus, plastid | 0.52 | 1.53 |
Protein Annotations
| MapMan:12.4.1.4.3 | MapMan:14.6.2.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:A0A078IKX2 | UniProt:A0A078IKX2 |
| EnsemblPlants:CDY51705 | ProteinID:CDY51705 | ProteinID:CDY51705.1 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00004051001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF837 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf |
| InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI0004EECAAE | SEG:seg | : | : |
Description
BnaA03g58950DBnaA03g58950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKX2]
Coordinates
chrLK033020:+:35492..39928
Molecular Weight (calculated)
129799.0 Da
IEP (calculated)
6.590
GRAVY (calculated)
-0.610
Length
1159 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEDEDMFLS SLGVTSANPA DIEQTILDEA TKKLDNYESV EERLEGSNLL PSSQSEILNK LRAVKFEIDA VASTVEQAEE EDGLQSGSVL QNALAKDRLR
0101: SLRKRKNELE KELSGLHGQG GTSGGADRGD ILRDLVKGEP SSRKRKLKEV RKPSKREGKK VKVVSFHEDT DFDAVFDAAS AGFVETERDE LVRKGILTPF
0201: HKLEGFERRL QQPGPSNTRS LPEGEDDNED SSSIDRAVQS MSLAAKARPT TKLLDAHDLP KLEATPVPFR RLRKLYKTND SSDSDAKKSK GGKGKKKRPL
0301: PKRKWTKRIS NEDSSLQENE DGRRISATSS CEEEELDDFD EVDDSEKSSV PLEGGLNIPE GIFIKLFDYQ RVGVQWLWEL HCQKAGGIIG DEMGLGKTVQ
0401: VLSFLGSLHF SKMYKPSIVI CPVTLLRQWR REARTWYPDF HVEILHDSAK DSNGKGRVDA SESDYDSEVS ADGDHEQKSK NTKKWSSLIN RVLNSDSGLL
0501: ITTYEQLRLH GEKLLNIEWG YAVLDEGHRI RNPNAEITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP VFEAEFSVPI TVGGYANASP
0601: LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEDIFDGNK NSLYGIDVMR KICNHPDLLE REHSHQNPDY
0701: GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSDDVFVFVL TTKVGGLGTN LTGANRVIIF
0801: DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNRILKNPQQ RRFFKARDMK DLFILNDDGD SNASTETSNI FSQLSEDINI
0901: VGAQTENTTD STTQLDTHDA AEELSGEKDA ETNGEPVDEE TNILKSLFDA HGIHSAVNHD AIINANDEEE KMRLEHQASQ VAQRAAEALR QSRMLRSRES
1001: ISVPTWTGRS GCAGAPSSVR RRFGSTVNSR LTTADKSSAV KNGISAGLSS GKAPSSAELL NKIRGSREQA IGVGLEQTQT SSSSSSRVGS LQPEVSIRQI
1101: CSFVQRKGGS TDTSSIVNHF SDRVPAKDVP LFKSLLKEIA TLRKDPNGSV WVLKSEYKD
0101: SLRKRKNELE KELSGLHGQG GTSGGADRGD ILRDLVKGEP SSRKRKLKEV RKPSKREGKK VKVVSFHEDT DFDAVFDAAS AGFVETERDE LVRKGILTPF
0201: HKLEGFERRL QQPGPSNTRS LPEGEDDNED SSSIDRAVQS MSLAAKARPT TKLLDAHDLP KLEATPVPFR RLRKLYKTND SSDSDAKKSK GGKGKKKRPL
0301: PKRKWTKRIS NEDSSLQENE DGRRISATSS CEEEELDDFD EVDDSEKSSV PLEGGLNIPE GIFIKLFDYQ RVGVQWLWEL HCQKAGGIIG DEMGLGKTVQ
0401: VLSFLGSLHF SKMYKPSIVI CPVTLLRQWR REARTWYPDF HVEILHDSAK DSNGKGRVDA SESDYDSEVS ADGDHEQKSK NTKKWSSLIN RVLNSDSGLL
0501: ITTYEQLRLH GEKLLNIEWG YAVLDEGHRI RNPNAEITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP VFEAEFSVPI TVGGYANASP
0601: LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEDIFDGNK NSLYGIDVMR KICNHPDLLE REHSHQNPDY
0701: GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSDDVFVFVL TTKVGGLGTN LTGANRVIIF
0801: DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNRILKNPQQ RRFFKARDMK DLFILNDDGD SNASTETSNI FSQLSEDINI
0901: VGAQTENTTD STTQLDTHDA AEELSGEKDA ETNGEPVDEE TNILKSLFDA HGIHSAVNHD AIINANDEEE KMRLEHQASQ VAQRAAEALR QSRMLRSRES
1001: ISVPTWTGRS GCAGAPSSVR RRFGSTVNSR LTTADKSSAV KNGISAGLSS GKAPSSAELL NKIRGSREQA IGVGLEQTQT SSSSSSRVGS LQPEVSIRQI
1101: CSFVQRKGGS TDTSSIVNHF SDRVPAKDVP LFKSLLKEIA TLRKDPNGSV WVLKSEYKD
0001: MEEDEDQFLL SSLGVTSANP EDLEQKILDE ATKKPDNDEG GSVEEKSTQL EGTNLLSSSQ NELLNKLRAV KFEIDAVAST VENVDEIAAE KGLKKDDESD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSSC EEEELDDFDD ADDNERSSVQ LEGGLNIPEC IFRKLFDYQR VGVQWLWELH
0401: CQRAGGIIGD EMGLGKTIQV LSFLGSLHFS KMYKPSIIIC PVTLLRQWRR EAQKWYPDFH VEILHDSAQD SGHGKGQGKA SESDYDSESS VDSDHEPKSK
0501: NTKKWDSLLN RVLNSESGLL ITTYEQLRLQ GEKLLNIEWG YAVLDEGHRI RNPNSDITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP
0601: VFEAEFSVPI TVGGYANASP LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEQIFDGNR NSLYGIDVMR
0701: KICNHPDLLE REHSHQNPDY GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSEDMFVFVL
0801: TTKVGGLGTN LTGANRVIIF DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNKILKNPQQ RRFFKARDMK DLFILKDDGD
0901: SNASTETSNI FSQLAEEINI VGVQSDKKPE SDTQLALHKT AEGSSEQTDV EMTDKTGEAM DEETNILKSL FDAHGIHSAV NHDAIMNAND EEEKMRLEHQ
1001: ASQVAQRAAE ALRQSRMLRS RESISVPTWT GRSGCAGAPS SVRRRFGSTV NSRLTQTGDK PSAIKNGISA GLSSGKAPSS AELLNRIRGS REQAIGVGLE
1101: QPQSSFPSSS GSSSRVGSLQ PEVLIRKICS FVQQKGGSAD TTSIVNHFRD IVSFNDKQLF KNLLKEIATL EKDQNRSFWV LKSEYKD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSSC EEEELDDFDD ADDNERSSVQ LEGGLNIPEC IFRKLFDYQR VGVQWLWELH
0401: CQRAGGIIGD EMGLGKTIQV LSFLGSLHFS KMYKPSIIIC PVTLLRQWRR EAQKWYPDFH VEILHDSAQD SGHGKGQGKA SESDYDSESS VDSDHEPKSK
0501: NTKKWDSLLN RVLNSESGLL ITTYEQLRLQ GEKLLNIEWG YAVLDEGHRI RNPNSDITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP
0601: VFEAEFSVPI TVGGYANASP LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEQIFDGNR NSLYGIDVMR
0701: KICNHPDLLE REHSHQNPDY GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSEDMFVFVL
0801: TTKVGGLGTN LTGANRVIIF DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNKILKNPQQ RRFFKARDMK DLFILKDDGD
0901: SNASTETSNI FSQLAEEINI VGVQSDKKPE SDTQLALHKT AEGSSEQTDV EMTDKTGEAM DEETNILKSL FDAHGIHSAV NHDAIMNAND EEEKMRLEHQ
1001: ASQVAQRAAE ALRQSRMLRS RESISVPTWT GRSGCAGAPS SVRRRFGSTV NSRLTQTGDK PSAIKNGISA GLSSGKAPSS AELLNRIRGS REQAIGVGLE
1101: QPQSSFPSSS GSSSRVGSLQ PEVLIRKICS FVQQKGGSAD TTSIVNHFRD IVSFNDKQLF KNLLKEIATL EKDQNRSFWV LKSEYKD
Arabidopsis Description
CHR8chromatin remodeling 8 [Source:TAIR;Acc:AT2G18760]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.