Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH32203 | Soybean | cytosol, mitochondrion, nucleus | 19.15 | 85.14 |
| Os01t0102800-01 | Rice | cytosol, nucleus, plastid | 52.97 | 70.88 |
| KRH19578 | Soybean | nucleus | 70.66 | 70.78 |
| CDX92882 | Canola | nucleus | 64.06 | 69.62 |
| PGSC0003DMT400026641 | Potato | nucleus | 68.54 | 69.33 |
| Solyc09g066480.2.1 | Tomato | nucleus | 68.38 | 69.17 |
| CDY51705 | Canola | nucleus | 64.96 | 68.77 |
| Bra024192.1-P | Field mustard | nucleus | 64.96 | 68.65 |
| GSMUA_AchrUn_... | Banana | cytosol | 59.41 | 65.85 |
| AT2G18760.3 | Thale cress | nucleus | 66.75 | 65.73 |
| EES02658 | Sorghum | nucleus | 63.41 | 64.4 |
| HORVU3Hr1G014660.2 | Barley | nucleus | 62.92 | 63.28 |
| TraesCS3D01G082200.2 | Wheat | nucleus | 62.27 | 62.57 |
| TraesCS3A01G081900.1 | Wheat | nucleus | 62.51 | 62.16 |
| Zm00001d040203_P003 | Maize | cytosol | 62.51 | 61.02 |
| TraesCS3B01G097000.1 | Wheat | nucleus | 62.59 | 60.14 |
| VIT_04s0044g01680.t01 | Wine grape | cytosol | 22.58 | 26.56 |
| VIT_12s0028g03440.t01 | Wine grape | plastid | 18.17 | 25.51 |
| VIT_02s0012g00110.t01 | Wine grape | cytosol | 10.68 | 20.31 |
| VIT_03s0063g00580.t01 | Wine grape | nucleus | 14.1 | 17.69 |
| VIT_06s0004g08480.t01 | Wine grape | mitochondrion, plastid | 8.88 | 16.01 |
| VIT_14s0036g01460.t01 | Wine grape | nucleus | 18.34 | 15.23 |
| VIT_03s0038g04290.t01 | Wine grape | nucleus | 2.28 | 12.67 |
| VIT_03s0038g00030.t01 | Wine grape | nucleus | 9.45 | 12.2 |
| VIT_15s0024g00350.t01 | Wine grape | mitochondrion | 18.91 | 11.47 |
| VIT_13s0067g01950.t01 | Wine grape | nucleus | 11.41 | 11.03 |
Protein Annotations
| EntrezGene:100253251 | wikigene:100253251 | MapMan:12.4.1.4.3 | MapMan:14.6.2.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 |
| EMBL:AM455906 | ProteinID:CAN67815 | ProteinID:CAN67815.1 | ProteinID:CCB60132 | ProteinID:CCB60132.1 | ncoils:Coil |
| UniProt:F6HZL7 | EMBL:FN596502 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | EntrezGene:LOC100253251 |
| wikigene:LOC100253251 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR10799 | PANTHER:PTHR10799:SF837 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N |
| SUPFAM:SSF52540 | TIGR:TC65121 | TIGR:TC67420 | UniParc:UPI00019839B2 | ArrayExpress:VIT_07s0005g03670 | EnsemblPlantsGene:VIT_07s0005g03670 |
| EnsemblPlants:VIT_07s0005g03670.t01 | unigene:Vvi.4565 | RefSeq:XP_002272543 | RefSeq:XP_002272543.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr7:-:6562130..6570110
Molecular Weight (calculated)
137822.0 Da
IEP (calculated)
7.163
GRAVY (calculated)
-0.641
Length
1227 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAEEEDRILL SSLGVTSANP EDVEREILAA ATNEAENGSE AGRSTEEEFL DKSKATELSS TSQAKLYSKL RALEVEIDAV AYTVQQARNT ERNENHVSHG
0101: NDNRAQGDAE DDKLVIQASP NNLTLQHALA ADRLRSLKKT KAQLEIELSD WQKEKPSKTV EHDKVIQNLV KEEARPKKRL KEIPKSGKDL KKRKKTISFD
0201: DDVDFDAVLD AASAGFVETE RDKLVRKGIL TPFHKLKGFE RRLQQPGPSS RDNLPEEGDK IDDLASASIA RAVQSISESA QARPTTKLLD SETLPKLDAP
0301: SHPFHRLKKP LKYPLPLDSE VEKNKDKKRK KKRPLPSKKW RKIISHEEEL LEESEDTSDN LVTSSNEEVN REDIEDADDN EPPCVTLEGG LRIPESIFSK
0401: LFDYQKVGVQ WLWELHCQQV GGIIGDEMGL GKTIQVLSFL GALHFSNMYK PSIVICPVTL LRQWKREAKK WYQSFHVEIL HDSAQDPASR KKRAKSYESE
0501: DSLDSDDEEN LSSKDTKKWD SLINRVLRSQ SGLLITTYEQ IRLQAGKLLD IKWGYAILDE GHRIRNPNAE VTILCKQLQT VHRIIMTGAP IQNKLAELWS
0601: LFDFVFPGKL GVLPVFEAEF AVPISVGGYA NATPLQVSTA YRCAVVLRDL IMPYLLRRMK ADVNAQLPNK TEHVLFCSLT TEQRSVYRAF LASSEVEQIF
0701: DGSRNSLYGI DVMRKICNHP DLLEREHAYQ NPDYGNPERS GKMKVVAHVL KGWKEQGHRV LLFAQTQQML DILENFLIAG GYVYRRMDGF TPIKHRMALI
0801: DEFNDSDDVF IFILTTKVGG LGTNLTGANR VIIYDPDWNP STDMQARERA WRIGQTRDVT VYRLITRGTI EEKVYQRQIY KHFLTNKILK NPQQKRFFKA
0901: RDMKDLFVLN DDGEDASTET SNIFSQLSED VNVVGKHKDS QDKQKSIIPV SSHACGAVDE GNNSTIGPSR SGENEKDDQS DEMDKETNIL RSLFDAHRLH
1001: SAVNHDAIMN AHGDEKMRLE EEASRVAKRA SEALRQSQML RSRESISVPT WTGRSGAAGA PSSVSRKFGS TVSSQLINRS KSSEESSSNG MSKPNGIAAG
1101: ASAGKALSSA ELLARIRGNQ ERATDDGLEH QLGSSSANRA RSTDSGPSSS RSTHNLSSVQ PEVLIRKICT FIQQKGGSTN STSIVQHFKD RIPSKDLPLF
1201: KNLLKEIATL EKDPNGSSWV LKPEYRL
0101: NDNRAQGDAE DDKLVIQASP NNLTLQHALA ADRLRSLKKT KAQLEIELSD WQKEKPSKTV EHDKVIQNLV KEEARPKKRL KEIPKSGKDL KKRKKTISFD
0201: DDVDFDAVLD AASAGFVETE RDKLVRKGIL TPFHKLKGFE RRLQQPGPSS RDNLPEEGDK IDDLASASIA RAVQSISESA QARPTTKLLD SETLPKLDAP
0301: SHPFHRLKKP LKYPLPLDSE VEKNKDKKRK KKRPLPSKKW RKIISHEEEL LEESEDTSDN LVTSSNEEVN REDIEDADDN EPPCVTLEGG LRIPESIFSK
0401: LFDYQKVGVQ WLWELHCQQV GGIIGDEMGL GKTIQVLSFL GALHFSNMYK PSIVICPVTL LRQWKREAKK WYQSFHVEIL HDSAQDPASR KKRAKSYESE
0501: DSLDSDDEEN LSSKDTKKWD SLINRVLRSQ SGLLITTYEQ IRLQAGKLLD IKWGYAILDE GHRIRNPNAE VTILCKQLQT VHRIIMTGAP IQNKLAELWS
0601: LFDFVFPGKL GVLPVFEAEF AVPISVGGYA NATPLQVSTA YRCAVVLRDL IMPYLLRRMK ADVNAQLPNK TEHVLFCSLT TEQRSVYRAF LASSEVEQIF
0701: DGSRNSLYGI DVMRKICNHP DLLEREHAYQ NPDYGNPERS GKMKVVAHVL KGWKEQGHRV LLFAQTQQML DILENFLIAG GYVYRRMDGF TPIKHRMALI
0801: DEFNDSDDVF IFILTTKVGG LGTNLTGANR VIIYDPDWNP STDMQARERA WRIGQTRDVT VYRLITRGTI EEKVYQRQIY KHFLTNKILK NPQQKRFFKA
0901: RDMKDLFVLN DDGEDASTET SNIFSQLSED VNVVGKHKDS QDKQKSIIPV SSHACGAVDE GNNSTIGPSR SGENEKDDQS DEMDKETNIL RSLFDAHRLH
1001: SAVNHDAIMN AHGDEKMRLE EEASRVAKRA SEALRQSQML RSRESISVPT WTGRSGAAGA PSSVSRKFGS TVSSQLINRS KSSEESSSNG MSKPNGIAAG
1101: ASAGKALSSA ELLARIRGNQ ERATDDGLEH QLGSSSANRA RSTDSGPSSS RSTHNLSSVQ PEVLIRKICT FIQQKGGSTN STSIVQHFKD RIPSKDLPLF
1201: KNLLKEIATL EKDPNGSSWV LKPEYRL
0001: MEEDEDQFLL SSLGVTSANP EDLEQKILDE ATKKPDNDEG GSVEEKSTQL EGTNLLSSSQ NELLNKLRAV KFEIDAVAST VENVDEIAAE KGLKKDDESD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSSC EEEELDDFDD ADDNERSSVQ LEGGLNIPEC IFRKLFDYQR VGVQWLWELH
0401: CQRAGGIIGD EMGLGKTIQV LSFLGSLHFS KMYKPSIIIC PVTLLRQWRR EAQKWYPDFH VEILHDSAQD SGHGKGQGKA SESDYDSESS VDSDHEPKSK
0501: NTKKWDSLLN RVLNSESGLL ITTYEQLRLQ GEKLLNIEWG YAVLDEGHRI RNPNSDITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP
0601: VFEAEFSVPI TVGGYANASP LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEQIFDGNR NSLYGIDVMR
0701: KICNHPDLLE REHSHQNPDY GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSEDMFVFVL
0801: TTKVGGLGTN LTGANRVIIF DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNKILKNPQQ RRFFKARDMK DLFILKDDGD
0901: SNASTETSNI FSQLAEEINI VGVQSDKKPE SDTQLALHKT AEGSSEQTDV EMTDKTGEAM DEETNILKSL FDAHGIHSAV NHDAIMNAND EEEKMRLEHQ
1001: ASQVAQRAAE ALRQSRMLRS RESISVPTWT GRSGCAGAPS SVRRRFGSTV NSRLTQTGDK PSAIKNGISA GLSSGKAPSS AELLNRIRGS REQAIGVGLE
1101: QPQSSFPSSS GSSSRVGSLQ PEVLIRKICS FVQQKGGSAD TTSIVNHFRD IVSFNDKQLF KNLLKEIATL EKDQNRSFWV LKSEYKD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSSC EEEELDDFDD ADDNERSSVQ LEGGLNIPEC IFRKLFDYQR VGVQWLWELH
0401: CQRAGGIIGD EMGLGKTIQV LSFLGSLHFS KMYKPSIIIC PVTLLRQWRR EAQKWYPDFH VEILHDSAQD SGHGKGQGKA SESDYDSESS VDSDHEPKSK
0501: NTKKWDSLLN RVLNSESGLL ITTYEQLRLQ GEKLLNIEWG YAVLDEGHRI RNPNSDITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP
0601: VFEAEFSVPI TVGGYANASP LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEQIFDGNR NSLYGIDVMR
0701: KICNHPDLLE REHSHQNPDY GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSEDMFVFVL
0801: TTKVGGLGTN LTGANRVIIF DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNKILKNPQQ RRFFKARDMK DLFILKDDGD
0901: SNASTETSNI FSQLAEEINI VGVQSDKKPE SDTQLALHKT AEGSSEQTDV EMTDKTGEAM DEETNILKSL FDAHGIHSAV NHDAIMNAND EEEKMRLEHQ
1001: ASQVAQRAAE ALRQSRMLRS RESISVPTWT GRSGCAGAPS SVRRRFGSTV NSRLTQTGDK PSAIKNGISA GLSSGKAPSS AELLNRIRGS REQAIGVGLE
1101: QPQSSFPSSS GSSSRVGSLQ PEVLIRKICS FVQQKGGSAD TTSIVNHFRD IVSFNDKQLF KNLLKEIATL EKDQNRSFWV LKSEYKD
Arabidopsis Description
CHR8chromatin remodeling 8 [Source:TAIR;Acc:AT2G18760]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.