CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040203_P003	Maize	cytosol	92.55	88.94
Os01t0102800-01	Rice	cytosol, nucleus, plastid	66.72	87.9
KRH32203	Soybean	cytosol, mitochondrion, nucleus	19.45	85.14
TraesCS3D01G082200.2	Wheat	nucleus	81.46	80.59
HORVU3Hr1G014660.2	Barley	nucleus	80.96	80.16
TraesCS3A01G081900.1	Wheat	nucleus	81.37	79.66
TraesCS3B01G097000.1	Wheat	nucleus	81.37	76.98
GSMUA_AchrUn_...	Banana	cytosol	60.26	65.76
CDX92882	Canola	nucleus	60.84	65.1
CDY51705	Canola	nucleus	62.09	64.71
Bra024192.1-P	Field mustard	nucleus	62.17	64.69
VIT_07s0005g03670.t01	Wine grape	nucleus	64.4	63.41
PGSC0003DMT400026641	Potato	nucleus	63.33	63.07
Solyc09g066480.2.1	Tomato	nucleus	62.91	62.65
KRH19578	Soybean	nucleus	63.0	62.12
AT2G18760.3	Thale cress	nucleus	63.58	61.64
EER91354	Sorghum	plastid	17.22	23.42
KXG27526	Sorghum	cytosol	19.87	22.86
EES07568	Sorghum	nucleus	15.81	19.69
KXG38419	Sorghum	nucleus	18.46	15.04
KXG24379	Sorghum	cytosol	10.35	12.89
EER92800	Sorghum	nucleus, plastid	10.02	12.8
KXG37026	Sorghum	nucleus	12.09	11.87
KXG31163	Sorghum	nucleus	12.33	11.66
KXG22701	Sorghum	mitochondrion	18.79	11.08
KXG34530	Sorghum	endoplasmic reticulum, golgi, plasma membrane	1.57	10.86
OQU77943	Sorghum	mitochondrion	12.75	10.56

Protein Annotations

MapMan:12.4.1.4.3	MapMan:14.6.2.2	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EntrezGene:8085055	UniProt:C5XF35
ncoils:Coil	EnsemblPlants:EES02658	ProteinID:EES02658	ProteinID:EES02658.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR038718	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR10799	PANTHER:PTHR10799:SF837	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
EnsemblPlantsGene:SORBI_3003G107500	SUPFAM:SSF52540	UniParc:UPI0001A84DA1	RefSeq:XP_002457538.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:9721660..9726514

Molecular Weight (calculated)

135074.0 Da

IEP (calculated)

7.098

GRAVY (calculated)

-0.640

Length

1208 amino acids

Sequence
(BLAST)

0001: MDEEDDDQRL LHSLGVTSAN IEDIEKKILS QVQTEPKHDD EPGAAVDEPS RSNVVPESDV QAKLHHKLRS VQLEIDAVAS TIKRAKNAAG KKIDSSDSGD
0101: GQDKKKQKQA DRTAQDEPHG GALQQALATE RLKSLKKAKA QIQKEISQSD PYQSGSDNRK DKMLAMLVED EPRRKKKSLL PARDPKKMSA PRLKTMSYND
0201: DEDFDAVLDG ASVGFMETER EELIRKGLLT PFHKLKGFEK RVELPGPSHW QNDPSEQAEE TIEASRIARV AQSMQQIAQS RPTTKLLDPE SLPRLDAPTA
0301: PFQRLGRPLK RPVSPGSEQE RKRQRNKTKR PLPDKKWRKA NSRKESLLET DDEDVGDFAA SVSEEDDQAA EGFDGVSPVI LEGGLRIPGT IYEQLFDYQK
0401: VGVQWLWELH CQRAGGIIGD EMGLGKTVQV LSFLGSLHNS SMYKPSIVIC PVTLLQQWQR EASRWYPKFK VEILHDSANG SSKKSKAYND SDSEGSWDSD
0501: QEGVRRAKPA KKWDDLISRV VNSGSGLLLT TYEQLRILGE KLLDIEWGYA VLDEGHRIRN PNAEITLVCK QLQTVHRIIM TGAPIQNKLS ELWSLFDFVF
0601: PGKLGVLPVF ETEFSVPITV GGYANATPLQ VSTAYRCAVV LRDLIMPYLL RRMKADVNAQ LPKKTEHVLF CSLTPEQRST YRAFLASSEV EQIFDGNRNS
0701: LYGIDVLRKI CNHPDLLERE HAAQNPDYGN PERSGKMKVV EQVLKVWKDQ GHRVLLFTQT QQMLDILENF LTACDYQYRR MDGLTPAKQR MALIDEFNNT
0801: DEIFVFILTT KVGGLGTNLT GANRIIIYDP DWNPSTDMQA RERAWRIGQT RDVTVYRLIT RGTIEEKVYH RQIYKHFLTN KVLKNPQQKR FFKARDMKDL
0901: FTLQDDEGNG STETSNIFSQ LSEDVNIGVP NDGQQDQEHI ASALSSTSEA EPSNGGEGRV DVNSDQADEE SNILKSLFDA QGIHSAINHD AIMNANDDQK
1001: VRLEAEASQV AQRAAEALRQ SRMLRSRDSF AVPTWTGRSG AAGAPSSVRR KFGSTINSQL TRSSQPSETS SSRSQSLPVG ALNGKALPSA ELLAKIRGTR
1101: EGAASDALEH QLNVGSASNH VSSPSGNGSR ASHPSNRSMI VQPEVLIRQL CTFIQHNGGF ASSTSITEHF KSRIQSKDML LFKNLLKEIA TLQRGLEGSM
1201: WVLKPDYT

Best Arabidopsis Sequence Match ( AT2G18760.4 )
(BLAST)

0001: MEEDEDQFLL SSLGVTSANP EDLEQKILDE ATKKPDNDEG GSVEEKSTQL EGTNLLSSSQ NELLNKLRAV KFEIDAVAST VENVDEIAAE KGLKKDDESD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSSC EEEELDDFDD ADDNERSSVQ LEGGLNIPEC IFRKLFDYQR VGVQWLWELH
0401: CQRAGGIIGD EMGLGKTIQV LSFLGSLHFS KMYKPSIIIC PVTLLRQWRR EAQKWYPDFH VEILHDSAQD SGHGKGQGKA SESDYDSESS VDSDHEPKSK
0501: NTKKWDSLLN RVLNSESGLL ITTYEQLRLQ GEKLLNIEWG YAVLDEGHRI RNPNSDITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP
0601: VFEAEFSVPI TVGGYANASP LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEQIFDGNR NSLYGIDVMR
0701: KICNHPDLLE REHSHQNPDY GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSEDMFVFVL
0801: TTKVGGLGTN LTGANRVIIF DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNKILKNPQQ RRFFKARDMK DLFILKDDGD
0901: SNASTETSNI FSQLAEEINI VGVQSDKKPE SDTQLALHKT AEGSSEQTDV EMTDKTGEAM DEETNILKSL FDAHGIHSAV NHDAIMNAND EEEKMRLEHQ
1001: ASQVAQRAAE ALRQSRMLRS RESISVPTWT GRSGCAGAPS SVRRRFGSTV NSRLTQTGDK PSAIKNGISA GLSSGKAPSS AELLNRIRGS REQAIGVGLE
1101: QPQSSFPSSS GSSSRVGSLQ PEVLIRKICS FVQQKGGSAD TTSIVNHFRD IVSFNDKQLF KNLLKEIATL EKDQNRSFWV LKSEYKD

Arabidopsis Description

CHR8chromatin remodeling 8 [Source:TAIR;Acc:AT2G18760]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.