CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013828_P002	Maize	plastid	93.13	94.08
Os05t0247900-01	Rice	plastid	79.17	82.13
TraesCS2D01G202400.1	Wheat	plastid	78.72	80.62
TraesCS2A01G185300.1	Wheat	plastid	78.72	80.62
TraesCS2B01G222000.1	Wheat	plastid	78.38	80.28
HORVU2Hr1G037590.4	Barley	plastid	79.05	80.05
GSMUA_Achr7P00330_001	Banana	plastid	64.98	66.4
VIT_12s0028g03440.t01	Wine grape	plastid	62.27	63.27
KRH25617	Soybean	nucleus	61.94	63.22
PGSC0003DMT400082782	Potato	plastid	60.59	60.59
AT1G03750.1	Thale cress	plastid	58.33	60.09
Solyc07g053870.2.1	Tomato	plastid	59.68	59.75
CDY32510	Canola	mitochondrion, nucleus	58.67	32.44
CDY37413	Canola	mitochondrion, nucleus	58.33	32.33
Bra032544.1-P	Field mustard	nucleus	58.78	31.77
EES07568	Sorghum	nucleus	21.06	19.28
KXG27526	Sorghum	cytosol	20.38	17.24
EES02658	Sorghum	nucleus	23.42	17.22
EER92800	Sorghum	nucleus, plastid	15.2	14.29
KXG34530	Sorghum	endoplasmic reticulum, golgi, plasma membrane	2.59	13.14
KXG24379	Sorghum	cytosol	13.06	11.96
KXG38419	Sorghum	nucleus	19.93	11.94
KXG37026	Sorghum	nucleus	13.63	9.84
KXG22701	Sorghum	mitochondrion	21.4	9.28
KXG31163	Sorghum	nucleus	12.73	8.84
OQU77943	Sorghum	mitochondrion	13.85	8.44

Protein Annotations

MapMan:12.4.1.4.3	Gene3D:3.40.50.10810	EntrezGene:8065146	UniProt:C5WVB2	ncoils:Coil	EnsemblPlants:EER91354
ProteinID:EER91354	ProteinID:EER91354.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0016020	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR038718	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR10799	PANTHER:PTHR10799:SF804	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
EnsemblPlantsGene:SORBI_3001G191500	SUPFAM:SSF52540	unigene:Sbi.21395	UniParc:UPI0001A823B0	RefSeq:XP_002464356.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:16978646..16992809

Molecular Weight (calculated)

100822.0 Da

IEP (calculated)

9.059

GRAVY (calculated)

-0.533

Length

888 amino acids

Sequence
(BLAST)

001: MSLNRLKETL NACSSSFSQP QTQPRSPPHH PALLPRRPPK TSLSQQLLRL EAAASSSSSS SFSSRPVQLP PVPRSPIQKP REVDEPPSSE DEDERKSRPI
101: IRRCQPPPPP AALESRGPFE PLVLSLPGEH PVVQVPPSIN CRLLAHQRDG VRFLYNLYRN NHGGILGDDM GLGKTIQTIA FLSSVIGKGN GHEQSTNKGK
201: KIGPVLILCP TSVIRNWENE FSEWAEFSVA VYHGPNRDLV LGKIETQGLE VLITSFDTFR IHDKILCGIS WELVVVDEAH RLKNEKSKLY TACLGITTQK
301: RFGLTGTIMQ NKIMELFNLF DWVVPGCLGD REHFRAYYDE PLKQGQRLSA PERFVQVADA RKKHLVSVLR KFLLRRTKEE TIGHLMLGKE DNIVFCKMSD
401: VQKRVYRRML QQPDIQILIN RDVPCSCGSP LPQVECCKRT EPAGVIWSYL HRDNPDEGCS ICPFCLVLPC LVKLQQISNH LELIKPNPKD EPEKQKKDAE
501: LAAAVFGADI DLVGGTAKSE NFMGLSDAEH CGKMRALERL LSLWTQQGDK ILLFSYSVRM LDILEKFLIR KGYCFSRFDG TTPMNARQSL VDEFNRSPSK
601: QVFLISTRAG NLGVNLVSAN RVVIFDPSWN PAQDLQAQDR SFRYGQRRHV TVFRLLGAGS LEELIYSRQI YKQQLSNIAV SGKIERRYFE GVQDDKKFQG
701: ELFGICNLFR DLSDKLFTSE IIEMHGEHGK SSATEATGIR EIVDTDLFGS QENRKSSTTT TDTDNEKLVD FGIVYAHRNE DVVNSRTNER EKGGTDKTLQ
801: SSLEELHSKN ETKHTVMEKS YSLEEKRKVA RSYSLEQKRK EFSRIASFMG MDDLEFSKWL LSASPHQRSE VLQNYKRKKK RKCEKKQK

Best Arabidopsis Sequence Match ( AT1G03750.1 )
(BLAST)

001: MSLLHTFKET LKPCGSFPSS SSLRVSSTQE LEPSRKPPKS SLSQQLLRLD DSYFLPSKHE SKISKTQVED FDHNEDDHKR NIKFDEEEVD EDDERSIEFG
101: RPGLSRAEFD YSGPYEPLML SSIGEIPIIH VPASINCRLL EHQREGVKFM YNLYKNNHGG ILGDDMGLGK TIQTIAFLAA VYGKDGDAGE SCLLESDKGP
201: VLIICPSSII HNWESEFSRW ASFFKVSVYH GSNRDMILEK LKARGVEVLV TSFDTFRIQG PVLSGINWEI VIADEAHRLK NEKSKLYEAC LEIKTKKRIG
301: LTGTVMQNKI SELFNLFEWV APGSLGTREH FRDFYDEPLK LGQRATAPER FVQIADKRKQ HLGSLLRKYM LRRTKEETIG HLMMGKEDNV VFCQMSQLQR
401: RVYQRMIQLP EIQCLVNKDN PCACGSPLKQ SECCRRIVPD GTIWSYLHRD NHDGCDSCPF CLVLPCLMKL QQISNHLELI KPNPKDEPEK QKKDAEFVST
501: VFGTDIDLLG GISASKSFMD LSDVKHCGKM RALEKLMASW ISKGDKILLF SYSVRMLDIL EKFLIRKGYS FARLDGSTPT NLRQSLVDDF NASPSKQVFL
601: ISTKAGGLGL NLVSANRVVI FDPNWNPSHD LQAQDRSFRY GQKRHVVVFR LLSAGSLEEL VYTRQVYKQQ LSNIAVAGKM ETRYFEGVQD CKEFQGELFG
701: ISNLFRDLSD KLFTSDIVEL HRDSNIDENK KRSLLETGVS EDEKEEEVMC SYKPEMEKPI LKDLGIVYAH RNEDIINIGE TTTSTSQRLN GDGNSADRKK
801: KKRKGCSEEE DMSSSNREQK REKYKMLAEF KGMEILEFSR WVLSASPFDR EKLLQDFLER VK

Arabidopsis Description

SWI2Switch 2 [Source:UniProtKB/Swiss-Prot;Acc:F4I2H2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.