Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0028g03440.t01 | Wine grape | plastid | 68.01 | 67.62 |
| TraesCS2B01G222000.1 | Wheat | plastid | 65.36 | 65.51 |
| TraesCS2A01G185300.1 | Wheat | plastid | 65.36 | 65.51 |
| KRH25617 | Soybean | nucleus | 65.48 | 65.4 |
| TraesCS2D01G202400.1 | Wheat | plastid | 65.25 | 65.4 |
| HORVU2Hr1G037590.4 | Barley | plastid | 65.59 | 64.99 |
| EER91354 | Sorghum | plastid | 66.4 | 64.98 |
| Zm00001d013828_P002 | Maize | plastid | 65.59 | 64.85 |
| Os05t0247900-01 | Rice | plastid | 63.75 | 64.72 |
| PGSC0003DMT400082782 | Potato | plastid | 64.79 | 63.4 |
| Solyc07g053870.2.1 | Tomato | plastid | 64.1 | 62.8 |
| AT1G03750.1 | Thale cress | plastid | 62.26 | 62.76 |
| CDY37413 | Canola | mitochondrion, nucleus | 61.68 | 33.46 |
| CDY32510 | Canola | mitochondrion, nucleus | 61.8 | 33.44 |
| Bra032544.1-P | Field mustard | nucleus | 61.91 | 32.74 |
| GSMUA_Achr5P24600_001 | Banana | nucleus | 21.63 | 20.13 |
| GSMUA_AchrUn_... | Banana | cytosol | 22.55 | 17.71 |
| GSMUA_Achr4P25080_001 | Banana | nucleus | 18.41 | 14.18 |
| GSMUA_Achr7P23270_001 | Banana | nucleus | 20.48 | 12.5 |
| GSMUA_Achr4P25070_001 | Banana | golgi | 3.57 | 12.25 |
| GSMUA_Achr7P06840_001 | Banana | nucleus | 13.12 | 12.09 |
| GSMUA_Achr8P01860_001 | Banana | nucleus | 13.69 | 11.02 |
| GSMUA_Achr6P04530_001 | Banana | nucleus | 9.44 | 9.24 |
| GSMUA_Achr4P27500_001 | Banana | mitochondrion | 20.48 | 8.67 |
Protein Annotations
| MapMan:12.4.1.4.3 | Gene3D:3.40.50.10810 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0016020 | EnsemblPlantsGene:GSMUA_Achr7G00330_001 | EnsemblPlants:GSMUA_Achr7P00330_001 | EnsemblPlants:GSMUA_Achr7T00330_001 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M0TDH3 | InterPro:P-loop_NTPase |
| PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF804 |
| SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI00029522FF |
| SEG:seg | : | : | : | : | : |
Description
Putative DNA repair and recombination protein RAD26-like [Source:GMGC_GENE;Acc:GSMUA_Achr7G00330_001]
Coordinates
chr7:+:270158..278699
Molecular Weight (calculated)
98591.1 Da
IEP (calculated)
8.532
GRAVY (calculated)
-0.346
Length
869 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFNRLKETL RPCSNFSASS STTTAAGASH ASSSYTQFPL SRKPPKSSLS QQLQRLDPQS LSDGLLFRAP DLARIRRSVA FEARGPYEPL VLSSPGETPT
101: ASCIILESII TLSMFVPASI NSRLLEHQRD GVRFLYNLYK NNHGGVLGDD MGLGKTIQTI AFLAAVIGKD GEHGVHEMEH VIKKGPTLII CPTSVIHNWE
201: NEFSEWGDFR VVVYHGPNRA LIIEKLESHG IEILITSFDT FRVHDKILCE IPWEIVIVDE AHRLKNEKSR LYKACLGIKT RKRFGLTGTI MQNRILELFN
301: LFDWVAPRSL GTWEHFRDFY DEPLKHGQRL SAPERYVQIA DERKQHLVAV LQKYLLRRTK EETIGHLMLG KEDNVVFCGM SELQKRVYKR MLEQPDVQCL
401: INKDLLCSCG SPLAQVECCK KIVPNGIIWT YLHRDNPEGC ESCPFCLVLP CLIKLQQISN HLELIKPNPK DDLEKQKKDA ELVSAVLGAD VDLIGGNAQT
501: ESFMGLSDVE HCGKMRALEN LLLSWTTGGD KILLFSYSVR MLDILEKFLI RKGYCFSRLD GSTPMSIRQS LVDDFNKSPS KQVFLISTRA GGLGLNLVSA
601: NRVVIFDPNW NPAQDLQAQD RSFRYGQKRH VIVFRLLAAG SLEELVYSRQ IYKQQLSNIA VSGKMEKRYF QGVQDCKEFQ GELFGICNLF RDLSDKLFTS
701: EIIEMHEKKG KYLATQMNPL NPESENYITP MEASEISFHG KSNEAAIFED EKKLQELGIV YAHRNENVVN MGPGNLGQKE AGTHENFTGK TLSKTRGNSL
801: ERIYNVGRLS SEQWKRNEFR SIAHNMGMAE LEFSKWLLSA SPSQRIEVLQ NYKKKKKQMI GPMRLPKDK
101: ASCIILESII TLSMFVPASI NSRLLEHQRD GVRFLYNLYK NNHGGVLGDD MGLGKTIQTI AFLAAVIGKD GEHGVHEMEH VIKKGPTLII CPTSVIHNWE
201: NEFSEWGDFR VVVYHGPNRA LIIEKLESHG IEILITSFDT FRVHDKILCE IPWEIVIVDE AHRLKNEKSR LYKACLGIKT RKRFGLTGTI MQNRILELFN
301: LFDWVAPRSL GTWEHFRDFY DEPLKHGQRL SAPERYVQIA DERKQHLVAV LQKYLLRRTK EETIGHLMLG KEDNVVFCGM SELQKRVYKR MLEQPDVQCL
401: INKDLLCSCG SPLAQVECCK KIVPNGIIWT YLHRDNPEGC ESCPFCLVLP CLIKLQQISN HLELIKPNPK DDLEKQKKDA ELVSAVLGAD VDLIGGNAQT
501: ESFMGLSDVE HCGKMRALEN LLLSWTTGGD KILLFSYSVR MLDILEKFLI RKGYCFSRLD GSTPMSIRQS LVDDFNKSPS KQVFLISTRA GGLGLNLVSA
601: NRVVIFDPNW NPAQDLQAQD RSFRYGQKRH VIVFRLLAAG SLEELVYSRQ IYKQQLSNIA VSGKMEKRYF QGVQDCKEFQ GELFGICNLF RDLSDKLFTS
701: EIIEMHEKKG KYLATQMNPL NPESENYITP MEASEISFHG KSNEAAIFED EKKLQELGIV YAHRNENVVN MGPGNLGQKE AGTHENFTGK TLSKTRGNSL
801: ERIYNVGRLS SEQWKRNEFR SIAHNMGMAE LEFSKWLLSA SPSQRIEVLQ NYKKKKKQMI GPMRLPKDK
001: MSLLHTFKET LKPCGSFPSS SSLRVSSTQE LEPSRKPPKS SLSQQLLRLD DSYFLPSKHE SKISKTQVED FDHNEDDHKR NIKFDEEEVD EDDERSIEFG
101: RPGLSRAEFD YSGPYEPLML SSIGEIPIIH VPASINCRLL EHQREGVKFM YNLYKNNHGG ILGDDMGLGK TIQTIAFLAA VYGKDGDAGE SCLLESDKGP
201: VLIICPSSII HNWESEFSRW ASFFKVSVYH GSNRDMILEK LKARGVEVLV TSFDTFRIQG PVLSGINWEI VIADEAHRLK NEKSKLYEAC LEIKTKKRIG
301: LTGTVMQNKI SELFNLFEWV APGSLGTREH FRDFYDEPLK LGQRATAPER FVQIADKRKQ HLGSLLRKYM LRRTKEETIG HLMMGKEDNV VFCQMSQLQR
401: RVYQRMIQLP EIQCLVNKDN PCACGSPLKQ SECCRRIVPD GTIWSYLHRD NHDGCDSCPF CLVLPCLMKL QQISNHLELI KPNPKDEPEK QKKDAEFVST
501: VFGTDIDLLG GISASKSFMD LSDVKHCGKM RALEKLMASW ISKGDKILLF SYSVRMLDIL EKFLIRKGYS FARLDGSTPT NLRQSLVDDF NASPSKQVFL
601: ISTKAGGLGL NLVSANRVVI FDPNWNPSHD LQAQDRSFRY GQKRHVVVFR LLSAGSLEEL VYTRQVYKQQ LSNIAVAGKM ETRYFEGVQD CKEFQGELFG
701: ISNLFRDLSD KLFTSDIVEL HRDSNIDENK KRSLLETGVS EDEKEEEVMC SYKPEMEKPI LKDLGIVYAH RNEDIINIGE TTTSTSQRLN GDGNSADRKK
801: KKRKGCSEEE DMSSSNREQK REKYKMLAEF KGMEILEFSR WVLSASPFDR EKLLQDFLER VK
101: RPGLSRAEFD YSGPYEPLML SSIGEIPIIH VPASINCRLL EHQREGVKFM YNLYKNNHGG ILGDDMGLGK TIQTIAFLAA VYGKDGDAGE SCLLESDKGP
201: VLIICPSSII HNWESEFSRW ASFFKVSVYH GSNRDMILEK LKARGVEVLV TSFDTFRIQG PVLSGINWEI VIADEAHRLK NEKSKLYEAC LEIKTKKRIG
301: LTGTVMQNKI SELFNLFEWV APGSLGTREH FRDFYDEPLK LGQRATAPER FVQIADKRKQ HLGSLLRKYM LRRTKEETIG HLMMGKEDNV VFCQMSQLQR
401: RVYQRMIQLP EIQCLVNKDN PCACGSPLKQ SECCRRIVPD GTIWSYLHRD NHDGCDSCPF CLVLPCLMKL QQISNHLELI KPNPKDEPEK QKKDAEFVST
501: VFGTDIDLLG GISASKSFMD LSDVKHCGKM RALEKLMASW ISKGDKILLF SYSVRMLDIL EKFLIRKGYS FARLDGSTPT NLRQSLVDDF NASPSKQVFL
601: ISTKAGGLGL NLVSANRVVI FDPNWNPSHD LQAQDRSFRY GQKRHVVVFR LLSAGSLEEL VYTRQVYKQQ LSNIAVAGKM ETRYFEGVQD CKEFQGELFG
701: ISNLFRDLSD KLFTSDIVEL HRDSNIDENK KRSLLETGVS EDEKEEEVMC SYKPEMEKPI LKDLGIVYAH RNEDIINIGE TTTSTSQRLN GDGNSADRKK
801: KKRKGCSEEE DMSSSNREQK REKYKMLAEF KGMEILEFSR WVLSASPFDR EKLLQDFLER VK
Arabidopsis Description
SWI2Switch 2 [Source:UniProtKB/Swiss-Prot;Acc:F4I2H2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.