Factsheet for Os05t0247900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G185300.1	Wheat	plastid	80.26	79.24
EER91354	Sorghum	plastid	82.13	79.17
TraesCS2B01G222000.1	Wheat	plastid	79.79	78.78
Zm00001d013828_P002	Maize	plastid	80.61	78.5
TraesCS2D01G202400.1	Wheat	plastid	79.44	78.43
HORVU2Hr1G037590.4	Barley	plastid	79.44	77.54
GSMUA_Achr7P00330_001	Banana	plastid	64.72	63.75
VIT_12s0028g03440.t01	Wine grape	plastid	63.32	62.01
KRH25617	Soybean	nucleus	62.03	61.03
PGSC0003DMT400082782	Potato	plastid	61.33	59.12
Solyc07g053870.2.1	Tomato	plastid	60.4	58.29
AT1G03750.1	Thale cress	plastid	58.29	57.89
CDY32510	Canola	mitochondrion, nucleus	58.06	30.95
CDY37413	Canola	mitochondrion, nucleus	57.83	30.9
Bra032544.1-P	Field mustard	nucleus	58.18	30.31
Os01t0102800-01	Rice	cytosol, nucleus, plastid	21.85	20.39
Os05t0392400-01	Rice	cytosol, nucleus	10.63	20.22
Os02t0762800-00	Rice	nucleus	21.03	18.37
Os07t0692600-01	Rice	mitochondrion	10.16	18.32
Os04t0692750-01	Rice	cytosol	21.03	18.24
Os01t0636700-01	Rice	cytoskeleton, cytosol, nucleus	9.46	17.27
Os07t0434500-01	Rice	cytoskeleton, cytosol, nucleus	13.43	17.11
Os08t0243866-00	Rice	endoplasmic reticulum	12.62	16.72
Os10t0457700-01	Rice	nucleus	19.98	12.96
Os06t0255700-01	Rice	cytosol	14.14	12.79
Os02t0650800-00	Rice	cytosol	13.43	12.27
Os03t0165266-00	Rice	nucleus	14.25	11.36
Os08t0289400-00	Rice	cytosol, nucleus	4.56	7.39
Os02t0161200-01	Rice	nucleus	2.8	5.63
Os07t0692500-01	Rice	cytosol	1.17	1.76
Os02t0161300-01	Rice	extracellular	0.82	1.37
Os07t0692401-00	Rice	mitochondrion	0.12	0.21
Os02t0762600-01	Rice	cytosol	0.0	0.0
Os04t0692700-01	Rice	nucleus	0.0	0.0

Protein Annotations

MapMan:12.4.1.4.3	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EntrezGene:4338212	ProteinID:AAV32104.1	EMBL:AK071717
ProteinID:BAF16935.1	ProteinID:BAS93009.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0016020	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR038718	EnsemblPlantsGene:Os05g0247900	EnsemblPlants:Os05t0247900-01	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF804	UniProt:Q5WMW4	SMART:SM00487
SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI00004508E9	RefSeq:XP_015640459.1
SEG:seg	:	:	:	:	:

Description

CSBDEAD-like helicase, N-terminal domain containing protein. (Os05t0247900-01)

Coordinates

chr5:-:8966122..8973308

Molecular Weight (calculated)

97074.8 Da

IEP (calculated)

8.306

GRAVY (calculated)

-0.394

Length

856 amino acids

Sequence
(BLAST)

001: MSLHSLKETL QSSSFSQPQS ESQPRSPPPL LARRPPKTSL SQQLLRLDAS SSSSSFSVSP PPPPRTSPTS DAAADDAPPL PEEEDEVPCI RPRASLPPAA
101: SLDSRGPYEP LALSPPGERP VVQVPSSINC RLLVHQRDGV RFLYNLYRNN HGGVLGDDMG LGKTIQTIAF LSAVIGKDND HGDQLVEGRK IAPILILCPT
201: SVIRNWENEF AEWARCSVAV YHGPNRDLVL QKVETQRLEI VITSFDTFRI HGKILCGISW DLVVVDEAHR LKNEKSKLYT ACLEITTRKR FGLTGTIMQN
301: KIMELFNLFD WIVPGCLGDR EHFRVYYDEP LKHGQRFSAP ERFVQVADKR KKHLVSVLSK FLLRRTKEET IGHLMLGKED NIVFCRMSDV QKRVYRRMLQ
401: QPDVQILINK DLPCSCGSPL TQVECCKRTE PHGIIWSYLH RDNPEGCSLC PFCLVLPCLG KLQQISNHLE LIKPNLKDEI EKQKKDAELA AAVFDTDIEL
501: VGGGAKSENF MGLSDAEHCG KMRALERLLS LWTLQGDKIL LFSYSVRMLD ILEKFLIRKG YCFSRFDGTT PMNARQLLID EFNRCPSKQV FLISTRAGNL
601: GVNLVSANRV VIFDPSWNPA QDLQAQDRSF RFGQRRHVTV FRLLGAGSLE ELIYSRQIYK QQLSNIAVSG KIEKRYFEGV QDDKKFQGEL FGICNLFRDL
701: SDKLFTSEII EMHGEHGKGN TAETIGIREI VDTNIFGTQD QMKSSMTAIH NENKNLYHCG IVYAHRNEDV VNTRTNEASN CAEDKTVPRH LEELQSKKNE
801: TMHTIKAKSY SLVQKKKEFS RIASFMGMND LEFSKWLLSV SPLQRHEVLD RYRNAK

Best Arabidopsis Sequence Match ( AT1G03750.1 )
(BLAST)

001: MSLLHTFKET LKPCGSFPSS SSLRVSSTQE LEPSRKPPKS SLSQQLLRLD DSYFLPSKHE SKISKTQVED FDHNEDDHKR NIKFDEEEVD EDDERSIEFG
101: RPGLSRAEFD YSGPYEPLML SSIGEIPIIH VPASINCRLL EHQREGVKFM YNLYKNNHGG ILGDDMGLGK TIQTIAFLAA VYGKDGDAGE SCLLESDKGP
201: VLIICPSSII HNWESEFSRW ASFFKVSVYH GSNRDMILEK LKARGVEVLV TSFDTFRIQG PVLSGINWEI VIADEAHRLK NEKSKLYEAC LEIKTKKRIG
301: LTGTVMQNKI SELFNLFEWV APGSLGTREH FRDFYDEPLK LGQRATAPER FVQIADKRKQ HLGSLLRKYM LRRTKEETIG HLMMGKEDNV VFCQMSQLQR
401: RVYQRMIQLP EIQCLVNKDN PCACGSPLKQ SECCRRIVPD GTIWSYLHRD NHDGCDSCPF CLVLPCLMKL QQISNHLELI KPNPKDEPEK QKKDAEFVST
501: VFGTDIDLLG GISASKSFMD LSDVKHCGKM RALEKLMASW ISKGDKILLF SYSVRMLDIL EKFLIRKGYS FARLDGSTPT NLRQSLVDDF NASPSKQVFL
601: ISTKAGGLGL NLVSANRVVI FDPNWNPSHD LQAQDRSFRY GQKRHVVVFR LLSAGSLEEL VYTRQVYKQQ LSNIAVAGKM ETRYFEGVQD CKEFQGELFG
701: ISNLFRDLSD KLFTSDIVEL HRDSNIDENK KRSLLETGVS EDEKEEEVMC SYKPEMEKPI LKDLGIVYAH RNEDIINIGE TTTSTSQRLN GDGNSADRKK
801: KKRKGCSEEE DMSSSNREQK REKYKMLAEF KGMEILEFSR WVLSASPFDR EKLLQDFLER VK

Arabidopsis Description

SWI2Switch 2 [Source:UniProtKB/Swiss-Prot;Acc:F4I2H2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.