Factsheet for Os01t0636700-01

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G021370.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	17.7	34.58
HORVU1Hr1G064000.1	Barley	cytosol, nucleus	22.81	33.44
TraesCS6B01G146000.1	Wheat	endoplasmic reticulum, golgi	18.34	25.67
TraesCS6D01G107800.1	Wheat	endoplasmic reticulum	16.63	23.85
TraesCS3A01G015600.1	Wheat	endoplasmic reticulum, golgi	25.16	19.54
TraesCS1D01G263000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	26.01	18.18
KRH59600	Soybean	cytosol, nucleus, plastid	25.59	15.31
TraesCS7D01G144700.1	Wheat	cytosol	20.26	14.22
TraesCS2D01G568400.1	Wheat	cytosol	26.87	13.19
Os04t0692750-01	Rice	cytosol	27.72	13.17
VIT_04s0044g01680.t01	Wine grape	cytosol	28.78	12.94
KXG27526	Sorghum	cytosol	28.78	12.86
KRH40956	Soybean	nucleus	27.08	12.33
TraesCS2A01G561600.1	Wheat	mitochondrion	27.29	11.97
Zm00001d002950_P002	Maize	nucleus	27.29	11.81
HORVU2Hr1G127340.1	Barley	cytosol	26.87	11.38
AT5G63950.1	Thale cress	cytosol	26.44	11.38
Solyc01g068280.2.1	Tomato	nucleus	28.14	10.86
Os01t0102800-01	Rice	cytosol, nucleus, plastid	21.11	10.8
Bra024250.1-P	Field mustard	cytosol	26.01	10.58
CDX84469	Canola	cytosol, mitochondrion, nucleus, plastid	25.8	10.56
CDY43772	Canola	mitochondrion	25.8	10.43
Os07t0434500-01	Rice	cytoskeleton, cytosol, nucleus	14.5	10.12
GSMUA_Achr7P23270_001	Banana	nucleus	29.85	9.83
Os02t0762800-00	Rice	nucleus	20.26	9.69
Os05t0247900-01	Rice	plastid	17.27	9.46
Os08t0289400-00	Rice	cytosol, nucleus	10.23	9.09
Os08t0243866-00	Rice	endoplasmic reticulum	11.09	8.05
Os06t0255700-01	Rice	cytosol	15.78	7.82
Os10t0457700-01	Rice	nucleus	21.32	7.58
Os02t0650800-00	Rice	cytosol	15.14	7.58
Os05t0392400-01	Rice	cytosol, nucleus	7.04	7.33
Os07t0692600-01	Rice	mitochondrion	7.25	7.16
Os03t0165266-00	Rice	nucleus	14.29	6.24
Os02t0161200-01	Rice	nucleus	4.26	4.69
Os02t0161300-01	Rice	extracellular	2.77	2.54
Os07t0692500-01	Rice	cytosol	1.49	1.23
HORVU6Hr1G021360.1	Barley	cytosol, mitochondrion, nucleus	0.43	0.89
Os07t0692401-00	Rice	mitochondrion	0.21	0.21
Os04t0692700-01	Rice	nucleus	0.0	0.0
Os02t0762600-01	Rice	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.70.330	Gene3D:3.40.50.10810	MapMan:35.1	EntrezGene:4326574	ProteinID:BAD68933.1	ProteinID:BAF05581.1
ProteinID:BAS73340.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR014001	InterPro:IPR038718	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os01g0636700	EnsemblPlants:Os01t0636700-01
InterPro:P-loop_NTPase	PFAM:PF00076	PFAM:PF00176	PFscan:PS50102	PFscan:PS51192	PANTHER:PTHR10799
PANTHER:PTHR10799:SF756	UniProt:Q5VNP2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00487
InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	SUPFAM:SSF54928	UniParc:UPI0000457FDD	RefSeq:XP_015622070.1

Description

CSBDEAD-like helicase, N-terminal domain containing protein. (Os01t0636700-01)

Coordinates

chr1:-:25524187..25532029

Molecular Weight (calculated)

52111.2 Da

IEP (calculated)

8.621

GRAVY (calculated)

-0.063

Length

469 amino acids

Sequence
(BLAST)

001: MVQIKELGEG SSHAGQVVIR GLPSELSYAD LADYFIKYGK IVDLIIIRAK GTAQAGDSAK ITYADAAISD KIIKCRHIIK GKHVVVDRTL MEDTIQYKDK
101: KTNRRITLDG LPWTVSNDDI VHFFSPYGTV VDHQITQKDE NKLSEGSGFV LFSSELAVIK ILSNGNTVNL GGEKVSINRS GAFVIAATGH HIKHPFLLPS
201: EIFSSLFPHQ KDGLEWLWRL HCEKSGGGIL ADDMGLGKTR QASAFLAGLF YSDLTQRVLI VAPGTILHQW IAELTKVGFN EDLIHSFWCA KTRHDSLAQV
301: LKEGGVLLIT YDLVRLYNEE LNGMSSKSSK MRRACPSWDY VILDEGHVLK NPNTKNAAAL KSLSRGQTVV LTGTPVQNNL SEFHSLMSLC CPTVLGSLAA
401: FERDFCKPID MGNVLEATTE VVMISSKKAM EFRKMVRPYF LRRTKESIES LLPNKADLVI WLKLTPYQI

Best Arabidopsis Sequence Match ( AT5G63950.1 )
(BLAST)

0001: MAENTASHRR KPRSLNDRHY SILQDLSAPP RQPPSSSHGE DEETKKSMIK LAGRRRLCKA LPKEDEADGY DDPDLVDFYS PVKGETSLDS AGIGNKFTSW
0101: DESKEANTEL AGEPNFSIIT DFCSPSPQLK QKEEMQGDGG RNEIMGILDD LTSKLGTMSI QKKKDSQSND FDACGVKSQV DKFDFEDAKS SFSLLSDLSK
0201: SSPDVVTTYN AGVNSIKDKQ GKSGFAIREE QTSKEFSREW EERISNVGKQ NSYSGRHFDD NSEDNRQGYN LDRGKSQCKE VDQSMKTTRH IEVSEKIRTV
0301: GRSNAAKLRD LDEDDDDDDC LILSGKKAAE MKINKPARSY NAKRHGYDER SLEDEGSITL TGLNLSYTLP GKIATMLYPH QREGLNWLWS LHTQGKGGIL
0401: GDDMGLGKTM QICSFLAGLF HSKLIKRALV VAPKTLLPHW MKELATVGLS QMTREYYGTS TKAREYDLHH ILQGKGILLT TYDIVRNNTK ALQGDDHYTD
0501: EDDEDGNKWD YMILDEGHLI KNPNTQRAKS LLEIPSSHRI IISGTPIQNN LKELWALFNF SCPGLLGDKN WFKQNYEHYI LRGTDKNATD REQRIGSTVA
0601: KNLREHIQPF FLRRLKSEVF GDDGATSKLS KKDEIVVWLR LTACQRQLYE AFLNSEIVLS AFDGSPLAAL TILKKICDHP LLLTKRAAED VLEGMDSTLT
0701: QEEAGVAERL AMHIADNVDT DDFQTKNDSI SCKLSFIMSL LENLIPEGHR VLIFSQTRKM LNLIQDSLTS NGYSFLRIDG TTKAPDRLKT VEEFQEGHVA
0801: PIFLLTSQVG GLGLTLTKAD RVIVVDPAWN PSTDNQSVDR AYRIGQTKDV IVYRLMTSAT VEEKIYRKQV YKGGLFKTAT EHKEQIRYFS QQDLRELFSL
0901: PKGGFDVSPT QQQLYEEHYN QIKLDEKLES HVKFLETLGI AGVSHHSLLF SKTAPIQAIQ KDEEEQIRRE TALLLGRASA SISQDTVING ADYAFKPKDV
1001: NLDKRINISP VDDKELSESV IKARLNRLTM LLQNKGTVSR LPDGGAKIQK QIAELTRELK DMKAAERINM PQVIDLEEDI SRKMQKGLNL

Arabidopsis Description

CHR24Protein CHROMATIN REMODELING 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8W103]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.