Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G015600.1 | Wheat | endoplasmic reticulum, golgi | 27.18 | 64.07 |
| HORVU6Hr1G021360.1 | Barley | cytosol, mitochondrion, nucleus | 10.04 | 63.56 |
| TraesCS1D01G263000.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 29.63 | 62.89 |
| TraesCS6B01G146000.1 | Wheat | endoplasmic reticulum, golgi | 14.33 | 60.9 |
| HORVU6Hr1G021370.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 10.25 | 60.83 |
| KRH59600 | Soybean | cytosol, nucleus, plastid | 32.65 | 59.31 |
| TraesCS6D01G107800.1 | Wheat | endoplasmic reticulum | 13.2 | 57.49 |
| TraesCS2D01G568400.1 | Wheat | cytosol | 37.99 | 56.65 |
| TraesCS7D01G144700.1 | Wheat | cytosol | 26.54 | 56.59 |
| HORVU1Hr1G064000.1 | Barley | cytosol, nucleus | 12.57 | 55.94 |
| KXG27526 | Sorghum | cytosol | 39.47 | 53.52 |
| TraesCS2A01G561600.1 | Wheat | mitochondrion | 39.12 | 52.1 |
| Zm00001d002950_P002 | Maize | nucleus | 38.2 | 50.18 |
| KRH40956 | Soybean | nucleus | 35.81 | 49.51 |
| VIT_04s0044g01680.t01 | Wine grape | cytosol | 36.1 | 49.28 |
| HORVU2Hr1G127340.1 | Barley | cytosol | 36.52 | 46.97 |
| AT5G63950.1 | Thale cress | cytosol | 34.27 | 44.77 |
| CDX84469 | Canola | cytosol, mitochondrion, nucleus, plastid | 34.34 | 42.67 |
| Bra024250.1-P | Field mustard | cytosol | 34.48 | 42.58 |
| Solyc01g068280.2.1 | Tomato | nucleus | 36.17 | 42.39 |
| CDY43772 | Canola | mitochondrion | 34.27 | 42.07 |
| Os01t0636700-01 | Rice | cytoskeleton, cytosol, nucleus | 9.83 | 29.85 |
| GSMUA_AchrUn_... | Banana | cytosol | 16.22 | 20.87 |
| GSMUA_Achr7P00330_001 | Banana | plastid | 12.5 | 20.48 |
| GSMUA_Achr5P24600_001 | Banana | nucleus | 12.57 | 19.16 |
| GSMUA_Achr4P25070_001 | Banana | golgi | 2.74 | 15.41 |
| GSMUA_Achr4P25080_001 | Banana | nucleus | 10.46 | 13.21 |
| GSMUA_Achr7P06840_001 | Banana | nucleus | 8.5 | 12.83 |
| GSMUA_Achr8P01860_001 | Banana | nucleus | 8.15 | 10.74 |
| GSMUA_Achr6P04530_001 | Banana | nucleus | 6.67 | 10.71 |
| GSMUA_Achr4P27500_001 | Banana | mitochondrion | 14.47 | 10.04 |
Protein Annotations
| MapMan:12.4.1.4.3 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | EnsemblPlantsGene:GSMUA_Achr7G23270_001 |
| EnsemblPlants:GSMUA_Achr7P23270_001 | EnsemblPlants:GSMUA_Achr7T23270_001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR001810 |
| InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M0TK13 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 |
| PFAM:PF00646 | PFscan:PS50181 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR31370 | SMART:SM00487 |
| SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | SUPFAM:SSF81383 | UniParc:UPI0002968F3E |
| SEG:seg | : | : | : | : | : |
Description
SNF2 family N-terminal domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G23270_001]
Coordinates
chr7:-:25546943..25563668
Molecular Weight (calculated)
158833.0 Da
IEP (calculated)
6.687
GRAVY (calculated)
-0.352
Length
1424 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSGEAENCGS VLFLGLPDDV LALISARLRP RDLCALGLCC RGLHVAVAAS EKAWLVQCLR LGPPPHLLPR WRRGVRSYGA LCRFLAAVAP LLGIWVHQNP
0101: ELGNVVCVVW GFLSVVGVRV IPQELGYLGL DAGPLLWAPV FEILADANGS PSRFFLHGRD CGEDCLHPGS VRSIDSSCNV LFLEADSHLA RKYSRRLPFS
0201: DRRRLLELVA ARIRLKVPRD LAAAPLFERS SFCDDANLLA NRRLELIEML KLSGGWIDRM AAELALSLTE HRNAASSNAV DHRTRTATDK RRAFSSVAGY
0301: LKQFMGRSTS PNVPISRNGN PVGGGKNKHA QLHEFLRSGD LPLQAPMACQ EHAGLWGGTF GWPPGQPSEG KSGKALFFLL LSYEEVNGHP LLIATKILEG
0401: THYVLHPNGS AMFIVKMDET TSEPFPWETD GESLQVEVKS SHSGEGIANG YGFRYPGSKP GSLFVLQNGL LAFVWKESQS ILTLQRVDLQ ELLKKGERVP
0501: VLPPIANFVY LTKSYSNVFT GFPINSGHSS SPNYDYPDGK WLDSPPGEND DGESIRDILD DLTSRLDCLS VEKPKPRSKP MVREPEPEPS VEYESATSSL
0601: SPSSVHSSPG VEKEVIEKGK EVKDKAARVF SLDDDVEGRE EEEDDCVVLG SGGKKQAPKG EENEGESGDF WSDDDVEDSG RDGKDGDDFT MVGSGTGKSR
0701: TYRLPERIFK MLYPHQRDGL KWLWTLHCGD TGGILGDDMG LGKTMQVSAF LAGLFHSRLI KRALIVAPKT LLAHWMKELS VVGLSEKIRD YSGTNATSRR
0801: YELEHVLKEG GVLLTTYDIV RNNSKAIRGD WFIDGDESEE DNLWDYTVLD EGHIIKNPKT QRSKSISDIQ SSHRIIISGT PIQNNLKELW ALFNFCCPDI
0901: LGDKDTFKIR YENPILRGND KNASDREKHI GSTVAKELRE RIKPYFLRRL KSEVFCEDDG ANSVKLSKKS EIIVWLKLTA CQRQLYEAFL NSELVHASME
1001: GSPLAALTIL KKICDHPLLL TKKGAEGVLE GMDSMLNREE VSIVEAMAMS LANMTDQDSI LQIDHNMSCK ISFIMSLLEN LVQEGHVVLI FSQTRKMLNL
1101: IQEAITCEGY KFLRIDGTTK IHERERIVKD FQEGPGAPIF LLTSQVGGLG LTLTKADRVI VVDPAWNPSM DNQSVDRAYR IGQKNDVLVY RLMTCGTIEE
1201: KIYKMQVFKG GLFKTATEHK EQTRYFSQKD IQELFRLPEQ GFDVSLTQKQ LQEEHDQQHN MNAYLMKHIE FLQRLGIAGV SHHSLLFSKT AVVPTVHEND
1301: KIQSVMGNRI VRNSQSGWSN GAEHAFNPND KEFISRRYTP KILTNSSTAS PEDIESKIKR LSQTLGDKAL VAKLPDSGDK IRKQISELRQ RLQTVNNASS
1401: IRRKEPEVIS IDDVTEELNK VILM
0101: ELGNVVCVVW GFLSVVGVRV IPQELGYLGL DAGPLLWAPV FEILADANGS PSRFFLHGRD CGEDCLHPGS VRSIDSSCNV LFLEADSHLA RKYSRRLPFS
0201: DRRRLLELVA ARIRLKVPRD LAAAPLFERS SFCDDANLLA NRRLELIEML KLSGGWIDRM AAELALSLTE HRNAASSNAV DHRTRTATDK RRAFSSVAGY
0301: LKQFMGRSTS PNVPISRNGN PVGGGKNKHA QLHEFLRSGD LPLQAPMACQ EHAGLWGGTF GWPPGQPSEG KSGKALFFLL LSYEEVNGHP LLIATKILEG
0401: THYVLHPNGS AMFIVKMDET TSEPFPWETD GESLQVEVKS SHSGEGIANG YGFRYPGSKP GSLFVLQNGL LAFVWKESQS ILTLQRVDLQ ELLKKGERVP
0501: VLPPIANFVY LTKSYSNVFT GFPINSGHSS SPNYDYPDGK WLDSPPGEND DGESIRDILD DLTSRLDCLS VEKPKPRSKP MVREPEPEPS VEYESATSSL
0601: SPSSVHSSPG VEKEVIEKGK EVKDKAARVF SLDDDVEGRE EEEDDCVVLG SGGKKQAPKG EENEGESGDF WSDDDVEDSG RDGKDGDDFT MVGSGTGKSR
0701: TYRLPERIFK MLYPHQRDGL KWLWTLHCGD TGGILGDDMG LGKTMQVSAF LAGLFHSRLI KRALIVAPKT LLAHWMKELS VVGLSEKIRD YSGTNATSRR
0801: YELEHVLKEG GVLLTTYDIV RNNSKAIRGD WFIDGDESEE DNLWDYTVLD EGHIIKNPKT QRSKSISDIQ SSHRIIISGT PIQNNLKELW ALFNFCCPDI
0901: LGDKDTFKIR YENPILRGND KNASDREKHI GSTVAKELRE RIKPYFLRRL KSEVFCEDDG ANSVKLSKKS EIIVWLKLTA CQRQLYEAFL NSELVHASME
1001: GSPLAALTIL KKICDHPLLL TKKGAEGVLE GMDSMLNREE VSIVEAMAMS LANMTDQDSI LQIDHNMSCK ISFIMSLLEN LVQEGHVVLI FSQTRKMLNL
1101: IQEAITCEGY KFLRIDGTTK IHERERIVKD FQEGPGAPIF LLTSQVGGLG LTLTKADRVI VVDPAWNPSM DNQSVDRAYR IGQKNDVLVY RLMTCGTIEE
1201: KIYKMQVFKG GLFKTATEHK EQTRYFSQKD IQELFRLPEQ GFDVSLTQKQ LQEEHDQQHN MNAYLMKHIE FLQRLGIAGV SHHSLLFSKT AVVPTVHEND
1301: KIQSVMGNRI VRNSQSGWSN GAEHAFNPND KEFISRRYTP KILTNSSTAS PEDIESKIKR LSQTLGDKAL VAKLPDSGDK IRKQISELRQ RLQTVNNASS
1401: IRRKEPEVIS IDDVTEELNK VILM
0001: MAENTASHRR KPRSLNDRHY SILQDLSAPP RQPPSSSHGE DEETKKSMIK LAGRRRLCKA LPKEDEADGY DDPDLVDFYS PVKGETSLDS AGIGNKFTSW
0101: DESKEANTEL AGEPNFSIIT DFCSPSPQLK QKEEMQGDGG RNEIMGILDD LTSKLGTMSI QKKKDSQSND FDACGVKSQV DKFDFEDAKS SFSLLSDLSK
0201: SSPDVVTTYN AGVNSIKDKQ GKSGFAIREE QTSKEFSREW EERISNVGKQ NSYSGRHFDD NSEDNRQGYN LDRGKSQCKE VDQSMKTTRH IEVSEKIRTV
0301: GRSNAAKLRD LDEDDDDDDC LILSGKKAAE MKINKPARSY NAKRHGYDER SLEDEGSITL TGLNLSYTLP GKIATMLYPH QREGLNWLWS LHTQGKGGIL
0401: GDDMGLGKTM QICSFLAGLF HSKLIKRALV VAPKTLLPHW MKELATVGLS QMTREYYGTS TKAREYDLHH ILQGKGILLT TYDIVRNNTK ALQGDDHYTD
0501: EDDEDGNKWD YMILDEGHLI KNPNTQRAKS LLEIPSSHRI IISGTPIQNN LKELWALFNF SCPGLLGDKN WFKQNYEHYI LRGTDKNATD REQRIGSTVA
0601: KNLREHIQPF FLRRLKSEVF GDDGATSKLS KKDEIVVWLR LTACQRQLYE AFLNSEIVLS AFDGSPLAAL TILKKICDHP LLLTKRAAED VLEGMDSTLT
0701: QEEAGVAERL AMHIADNVDT DDFQTKNDSI SCKLSFIMSL LENLIPEGHR VLIFSQTRKM LNLIQDSLTS NGYSFLRIDG TTKAPDRLKT VEEFQEGHVA
0801: PIFLLTSQVG GLGLTLTKAD RVIVVDPAWN PSTDNQSVDR AYRIGQTKDV IVYRLMTSAT VEEKIYRKQV YKGGLFKTAT EHKEQIRYFS QQDLRELFSL
0901: PKGGFDVSPT QQQLYEEHYN QIKLDEKLES HVKFLETLGI AGVSHHSLLF SKTAPIQAIQ KDEEEQIRRE TALLLGRASA SISQDTVING ADYAFKPKDV
1001: NLDKRINISP VDDKELSESV IKARLNRLTM LLQNKGTVSR LPDGGAKIQK QIAELTRELK DMKAAERINM PQVIDLEEDI SRKMQKGLNL
0101: DESKEANTEL AGEPNFSIIT DFCSPSPQLK QKEEMQGDGG RNEIMGILDD LTSKLGTMSI QKKKDSQSND FDACGVKSQV DKFDFEDAKS SFSLLSDLSK
0201: SSPDVVTTYN AGVNSIKDKQ GKSGFAIREE QTSKEFSREW EERISNVGKQ NSYSGRHFDD NSEDNRQGYN LDRGKSQCKE VDQSMKTTRH IEVSEKIRTV
0301: GRSNAAKLRD LDEDDDDDDC LILSGKKAAE MKINKPARSY NAKRHGYDER SLEDEGSITL TGLNLSYTLP GKIATMLYPH QREGLNWLWS LHTQGKGGIL
0401: GDDMGLGKTM QICSFLAGLF HSKLIKRALV VAPKTLLPHW MKELATVGLS QMTREYYGTS TKAREYDLHH ILQGKGILLT TYDIVRNNTK ALQGDDHYTD
0501: EDDEDGNKWD YMILDEGHLI KNPNTQRAKS LLEIPSSHRI IISGTPIQNN LKELWALFNF SCPGLLGDKN WFKQNYEHYI LRGTDKNATD REQRIGSTVA
0601: KNLREHIQPF FLRRLKSEVF GDDGATSKLS KKDEIVVWLR LTACQRQLYE AFLNSEIVLS AFDGSPLAAL TILKKICDHP LLLTKRAAED VLEGMDSTLT
0701: QEEAGVAERL AMHIADNVDT DDFQTKNDSI SCKLSFIMSL LENLIPEGHR VLIFSQTRKM LNLIQDSLTS NGYSFLRIDG TTKAPDRLKT VEEFQEGHVA
0801: PIFLLTSQVG GLGLTLTKAD RVIVVDPAWN PSTDNQSVDR AYRIGQTKDV IVYRLMTSAT VEEKIYRKQV YKGGLFKTAT EHKEQIRYFS QQDLRELFSL
0901: PKGGFDVSPT QQQLYEEHYN QIKLDEKLES HVKFLETLGI AGVSHHSLLF SKTAPIQAIQ KDEEEQIRRE TALLLGRASA SISQDTVING ADYAFKPKDV
1001: NLDKRINISP VDDKELSESV IKARLNRLTM LLQNKGTVSR LPDGGAKIQK QIAELTRELK DMKAAERINM PQVIDLEEDI SRKMQKGLNL
Arabidopsis Description
CHR24Protein CHROMATIN REMODELING 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8W103]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.