Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43772 | Canola | mitochondrion | 90.05 | 88.97 |
| AT5G63950.1 | Thale cress | cytosol | 76.44 | 80.37 |
| KRH59600 | Soybean | cytosol, nucleus, plastid | 43.11 | 63.01 |
| TraesCS3A01G015600.1 | Wheat | endoplasmic reticulum, golgi | 29.84 | 56.62 |
| TraesCS1D01G263000.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 32.98 | 56.33 |
| VIT_04s0044g01680.t01 | Wine grape | cytosol | 51.13 | 56.18 |
| TraesCS6B01G146000.1 | Wheat | endoplasmic reticulum, golgi | 16.32 | 55.82 |
| HORVU6Hr1G021360.1 | Barley | cytosol, mitochondrion, nucleus | 10.91 | 55.56 |
| KRH40956 | Soybean | nucleus | 49.39 | 54.95 |
| HORVU6Hr1G021370.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 11.17 | 53.33 |
| TraesCS6D01G107800.1 | Wheat | endoplasmic reticulum | 15.1 | 52.91 |
| TraesCS2D01G568400.1 | Wheat | cytosol | 41.01 | 49.21 |
| HORVU1Hr1G064000.1 | Barley | cytosol, nucleus | 13.61 | 48.75 |
| TraesCS7D01G144700.1 | Wheat | cytosol | 27.92 | 47.9 |
| Solyc01g068280.2.1 | Tomato | nucleus | 49.3 | 46.5 |
| KXG27526 | Sorghum | cytosol | 40.4 | 44.1 |
| TraesCS2A01G561600.1 | Wheat | mitochondrion | 41.1 | 44.06 |
| Zm00001d002950_P002 | Maize | nucleus | 39.79 | 42.07 |
| HORVU2Hr1G127340.1 | Barley | cytosol | 39.62 | 41.01 |
| GSMUA_Achr7P23270_001 | Banana | nucleus | 42.67 | 34.34 |
| CDX78226 | Canola | cytosol | 4.45 | 27.57 |
| Os01t0636700-01 | Rice | cytoskeleton, cytosol, nucleus | 10.56 | 25.8 |
| CDX92882 | Canola | nucleus | 21.73 | 22.05 |
| CDY51705 | Canola | nucleus | 21.73 | 21.48 |
| CDY59589 | Canola | nucleus | 3.05 | 19.89 |
| CDY29038 | Canola | nucleus | 2.97 | 19.32 |
| CDX99258 | Canola | nucleus | 15.01 | 18.96 |
| CDX92308 | Canola | nucleus | 15.01 | 18.88 |
| CDX77430 | Canola | nucleus | 10.99 | 18.72 |
| CDY67491 | Canola | cytosol | 2.27 | 16.46 |
| CDY37734 | Canola | nucleus | 10.73 | 16.27 |
| CDY23754 | Canola | cytosol | 10.82 | 16.08 |
| CDX89710 | Canola | nucleus | 11.17 | 14.81 |
| CDX93009 | Canola | nucleus | 12.13 | 14.33 |
| CDX94823 | Canola | nucleus | 11.78 | 13.86 |
| CDY66441 | Canola | nucleus | 11.87 | 13.17 |
| CDY16534 | Canola | nucleus | 4.8 | 12.61 |
| CDX95047 | Canola | nucleus | 16.06 | 12.43 |
| CDX93550 | Canola | nucleus | 16.06 | 12.32 |
| CDY22674 | Canola | nucleus | 8.03 | 11.95 |
| CDY37413 | Canola | mitochondrion, nucleus | 15.79 | 11.3 |
| CDY32510 | Canola | mitochondrion, nucleus | 15.71 | 11.21 |
| CDY56857 | Canola | cytosol | 11.61 | 10.51 |
| CDX92463 | Canola | nucleus | 11.61 | 10.51 |
| CDX73492 | Canola | mitochondrion | 18.59 | 10.24 |
| CDY47279 | Canola | nucleus | 11.08 | 9.5 |
| CDY10115 | Canola | nucleus | 11.34 | 9.43 |
| CDX78225 | Canola | mitochondrion | 14.49 | 8.22 |
| CDY06321 | Canola | nucleus | 2.71 | 5.33 |
| CDY13196 | Canola | cytosol, nucleus, plastid | 0.26 | 0.77 |
Protein Annotations
| MapMan:12.4.1.4.3 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:A0A078D7Y4 | EnsemblPlants:CDX84469 | ProteinID:CDX84469 |
| ProteinID:CDX84469.1 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00141684001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 |
| InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 |
| PANTHER:PTHR10799:SF756 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| UniParc:UPI0004EEEE56 | SEG:seg | : | : | : | : |
Description
BnaC03g50310D
Coordinates
chrLK031837:-:1306015..1312717
Molecular Weight (calculated)
128749.0 Da
IEP (calculated)
6.948
GRAVY (calculated)
-0.483
Length
1146 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAENTTSTRR RPQSLNDRHY RLLQDLSAPP KHAPSSSSTH EEDEGTKIKL AGRRRLCKAS VKEDVSDEDD DPDLADFDSP GLFLLALTAE TGNKFTSRDE
0101: ESKEAKTEVG VAPSFSMITD FGSPSPHLEQ RQGGGGQNEI MDILDDLTSK LGTMSIKKKK DIQSSDFESV KPSFSLISDL SESSSSDVVT TTKAGADSLG
0201: DRQGHVGFAI REEKASNAFA GERGERVSNV GKQQPFSGQQ HYVDKSEGYK QEYYLDRGKG KLEEVDRSLK TARHVELSEK LRSVGRSNAA RLRDLDDDDD
0301: CVVLTGKKAA EMKIHLEKPT KPARGHNTAT HAYEEKVSED EGSITFTGPK SSYTLRGKIA TILYPHQREG LKWLWSLHIQ EKGGILGDDM GLGKTMQICS
0401: FLVGLFHSKL IKRALVVAPK TLLPHWMKEL ATVGLSQMTR EYYGTSVKAR EYDLNHILQG KGVLLTTYDI VRNNTKALQG YQLYTDDDDD DDIKWDYMIL
0501: DEGHLIKNPS TQRAKSLLEI PSSHRIIISG TPIQNNLKEL WALFNFSCPG LLGDKKWFKE NYEHYILRGN DKDASDRDKR IGSTVAKQIL KYQSFHVSVL
0601: VLNSFVRLHS VCAIATEGIL CVLLLPKKLR EHIQPFFLRR LKSEVFGDDA TTSKLSKKDE IVVWLRLTAC QRQIYEAFLN SEIVLSAFDG SPLAALTLYF
0701: ENQRKFFLKK PGELCQKLLT INLYILKKIC DHPLLLTKRA AEDVLEGMES TLTQEEAGVA ERLAMHIADN VDTDDFQTKN DSISCKLTFI MSLLENLIPE
0801: GHRVLIFSQT RKMLNLIQDS LTSNGYSFLR IDGTTKGLDR LKTVEEFQSG HVAPIFLLTS QVGGLGLTLT KADRVIVVDP AWNPSTDNQS VDRAYRIGQT
0901: KDVIVYRLMS SATVEEKIYR KQVYKGGLFK TATEQKEQIR YFSQQDLREL FSLPKGGFDV SPTQQQLYEE HYNQIKLDET LESHVKFLET LGIAGVSHHS
1001: LLFSKTAPIQ PIQQDEVEEI RRRTTSFVGG PSAKLASSSQ DNMINGAVYA FKPKDVNLDK RINISPIDES ERSESEIKAR ISRLSMLFQN KSMVASLPDR
1101: GAKIQKQIAE LTGELEEIKA VKSNDMPHQV IDLEDISQKM HKGLNL
0101: ESKEAKTEVG VAPSFSMITD FGSPSPHLEQ RQGGGGQNEI MDILDDLTSK LGTMSIKKKK DIQSSDFESV KPSFSLISDL SESSSSDVVT TTKAGADSLG
0201: DRQGHVGFAI REEKASNAFA GERGERVSNV GKQQPFSGQQ HYVDKSEGYK QEYYLDRGKG KLEEVDRSLK TARHVELSEK LRSVGRSNAA RLRDLDDDDD
0301: CVVLTGKKAA EMKIHLEKPT KPARGHNTAT HAYEEKVSED EGSITFTGPK SSYTLRGKIA TILYPHQREG LKWLWSLHIQ EKGGILGDDM GLGKTMQICS
0401: FLVGLFHSKL IKRALVVAPK TLLPHWMKEL ATVGLSQMTR EYYGTSVKAR EYDLNHILQG KGVLLTTYDI VRNNTKALQG YQLYTDDDDD DDIKWDYMIL
0501: DEGHLIKNPS TQRAKSLLEI PSSHRIIISG TPIQNNLKEL WALFNFSCPG LLGDKKWFKE NYEHYILRGN DKDASDRDKR IGSTVAKQIL KYQSFHVSVL
0601: VLNSFVRLHS VCAIATEGIL CVLLLPKKLR EHIQPFFLRR LKSEVFGDDA TTSKLSKKDE IVVWLRLTAC QRQIYEAFLN SEIVLSAFDG SPLAALTLYF
0701: ENQRKFFLKK PGELCQKLLT INLYILKKIC DHPLLLTKRA AEDVLEGMES TLTQEEAGVA ERLAMHIADN VDTDDFQTKN DSISCKLTFI MSLLENLIPE
0801: GHRVLIFSQT RKMLNLIQDS LTSNGYSFLR IDGTTKGLDR LKTVEEFQSG HVAPIFLLTS QVGGLGLTLT KADRVIVVDP AWNPSTDNQS VDRAYRIGQT
0901: KDVIVYRLMS SATVEEKIYR KQVYKGGLFK TATEQKEQIR YFSQQDLREL FSLPKGGFDV SPTQQQLYEE HYNQIKLDET LESHVKFLET LGIAGVSHHS
1001: LLFSKTAPIQ PIQQDEVEEI RRRTTSFVGG PSAKLASSSQ DNMINGAVYA FKPKDVNLDK RINISPIDES ERSESEIKAR ISRLSMLFQN KSMVASLPDR
1101: GAKIQKQIAE LTGELEEIKA VKSNDMPHQV IDLEDISQKM HKGLNL
0001: MAENTASHRR KPRSLNDRHY SILQDLSAPP RQPPSSSHGE DEETKKSMIK LAGRRRLCKA LPKEDEADGY DDPDLVDFYS PVKGETSLDS AGIGNKFTSW
0101: DESKEANTEL AGEPNFSIIT DFCSPSPQLK QKEEMQGDGG RNEIMGILDD LTSKLGTMSI QKKKDSQSND FDACGVKSQV DKFDFEDAKS SFSLLSDLSK
0201: SSPDVVTTYN AGVNSIKDKQ GKSGFAIREE QTSKEFSREW EERISNVGKQ NSYSGRHFDD NSEDNRQGYN LDRGKSQCKE VDQSMKTTRH IEVSEKIRTV
0301: GRSNAAKLRD LDEDDDDDDC LILSGKKAAE MKINKPARSY NAKRHGYDER SLEDEGSITL TGLNLSYTLP GKIATMLYPH QREGLNWLWS LHTQGKGGIL
0401: GDDMGLGKTM QICSFLAGLF HSKLIKRALV VAPKTLLPHW MKELATVGLS QMTREYYGTS TKAREYDLHH ILQGKGILLT TYDIVRNNTK ALQGDDHYTD
0501: EDDEDGNKWD YMILDEGHLI KNPNTQRAKS LLEIPSSHRI IISGTPIQNN LKELWALFNF SCPGLLGDKN WFKQNYEHYI LRGTDKNATD REQRIGSTVA
0601: KNLREHIQPF FLRRLKSEVF GDDGATSKLS KKDEIVVWLR LTACQRQLYE AFLNSEIVLS AFDGSPLAAL TILKKICDHP LLLTKRAAED VLEGMDSTLT
0701: QEEAGVAERL AMHIADNVDT DDFQTKNDSI SCKLSFIMSL LENLIPEGHR VLIFSQTRKM LNLIQDSLTS NGYSFLRIDG TTKAPDRLKT VEEFQEGHVA
0801: PIFLLTSQVG GLGLTLTKAD RVIVVDPAWN PSTDNQSVDR AYRIGQTKDV IVYRLMTSAT VEEKIYRKQV YKGGLFKTAT EHKEQIRYFS QQDLRELFSL
0901: PKGGFDVSPT QQQLYEEHYN QIKLDEKLES HVKFLETLGI AGVSHHSLLF SKTAPIQAIQ KDEEEQIRRE TALLLGRASA SISQDTVING ADYAFKPKDV
1001: NLDKRINISP VDDKELSESV IKARLNRLTM LLQNKGTVSR LPDGGAKIQK QIAELTRELK DMKAAERINM PQVIDLEEDI SRKMQKGLNL
0101: DESKEANTEL AGEPNFSIIT DFCSPSPQLK QKEEMQGDGG RNEIMGILDD LTSKLGTMSI QKKKDSQSND FDACGVKSQV DKFDFEDAKS SFSLLSDLSK
0201: SSPDVVTTYN AGVNSIKDKQ GKSGFAIREE QTSKEFSREW EERISNVGKQ NSYSGRHFDD NSEDNRQGYN LDRGKSQCKE VDQSMKTTRH IEVSEKIRTV
0301: GRSNAAKLRD LDEDDDDDDC LILSGKKAAE MKINKPARSY NAKRHGYDER SLEDEGSITL TGLNLSYTLP GKIATMLYPH QREGLNWLWS LHTQGKGGIL
0401: GDDMGLGKTM QICSFLAGLF HSKLIKRALV VAPKTLLPHW MKELATVGLS QMTREYYGTS TKAREYDLHH ILQGKGILLT TYDIVRNNTK ALQGDDHYTD
0501: EDDEDGNKWD YMILDEGHLI KNPNTQRAKS LLEIPSSHRI IISGTPIQNN LKELWALFNF SCPGLLGDKN WFKQNYEHYI LRGTDKNATD REQRIGSTVA
0601: KNLREHIQPF FLRRLKSEVF GDDGATSKLS KKDEIVVWLR LTACQRQLYE AFLNSEIVLS AFDGSPLAAL TILKKICDHP LLLTKRAAED VLEGMDSTLT
0701: QEEAGVAERL AMHIADNVDT DDFQTKNDSI SCKLSFIMSL LENLIPEGHR VLIFSQTRKM LNLIQDSLTS NGYSFLRIDG TTKAPDRLKT VEEFQEGHVA
0801: PIFLLTSQVG GLGLTLTKAD RVIVVDPAWN PSTDNQSVDR AYRIGQTKDV IVYRLMTSAT VEEKIYRKQV YKGGLFKTAT EHKEQIRYFS QQDLRELFSL
0901: PKGGFDVSPT QQQLYEEHYN QIKLDEKLES HVKFLETLGI AGVSHHSLLF SKTAPIQAIQ KDEEEQIRRE TALLLGRASA SISQDTVING ADYAFKPKDV
1001: NLDKRINISP VDDKELSESV IKARLNRLTM LLQNKGTVSR LPDGGAKIQK QIAELTRELK DMKAAERINM PQVIDLEEDI SRKMQKGLNL
Arabidopsis Description
CHR24Protein CHROMATIN REMODELING 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8W103]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.