Factsheet for Solyc01g068280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59600	Soybean	cytosol, nucleus, plastid	41.15	63.78
TraesCS3A01G015600.1	Wheat	endoplasmic reticulum, golgi	28.31	56.95
VIT_04s0044g01680.t01	Wine grape	cytosol	48.72	56.76
KRH40956	Soybean	nucleus	47.74	56.31
TraesCS1D01G263000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	30.62	55.44
TraesCS6B01G146000.1	Wheat	endoplasmic reticulum, golgi	14.98	54.33
HORVU6Hr1G021360.1	Barley	cytosol, mitochondrion, nucleus	10.04	54.22
HORVU6Hr1G021370.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	10.62	53.75
HORVU1Hr1G064000.1	Barley	cytosol, nucleus	13.91	52.81
AT5G63950.1	Thale cress	cytosol	46.83	52.2
TraesCS6D01G107800.1	Wheat	endoplasmic reticulum	13.74	51.07
CDX84469	Canola	cytosol, mitochondrion, nucleus, plastid	46.5	49.3
Bra024250.1-P	Field mustard	cytosol	46.58	49.09
CDY43772	Canola	mitochondrion	46.34	48.53
TraesCS7D01G144700.1	Wheat	cytosol	26.17	47.6
TraesCS2D01G568400.1	Wheat	cytosol	36.63	46.6
KXG27526	Sorghum	cytosol	38.77	44.86
Zm00001d002950_P002	Maize	nucleus	37.53	42.07
TraesCS2A01G561600.1	Wheat	mitochondrion	36.95	42.0
HORVU2Hr1G127340.1	Barley	cytosol	35.72	39.21
GSMUA_Achr7P23270_001	Banana	nucleus	42.39	36.17
Os01t0636700-01	Rice	cytoskeleton, cytosol, nucleus	10.86	28.14
Solyc08g061420.1.1	Tomato	cytosol	1.89	25.84
Solyc08g077580.1.1	Tomato	cytosol	3.37	23.7
Solyc01g068300.1.1	Tomato	cytosol	7.49	23.33
Solyc03g061640.1.1	Tomato	cytosol	3.05	22.29
Solyc08g077590.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	3.05	21.26
Solyc08g077650.1.1	Tomato	cytosol	0.91	21.15
Solyc09g066480.2.1	Tomato	nucleus	20.82	20.86
Solyc07g053870.2.1	Tomato	plastid	15.14	20.74
Solyc08g062080.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	1.98	20.17
Solyc04g056410.2.1	Tomato	nucleus	9.55	19.76
Solyc08g061990.1.1	Tomato	mitochondrion	6.26	19.74
Solyc08g061340.1.1	Tomato	cytosol	3.62	19.73
Solyc08g062000.1.1	Tomato	cytosol	6.34	19.69
Solyc04g054440.1.1	Tomato	nucleus	10.54	19.54
Solyc01g068320.1.1	Tomato	cytosol	10.62	19.31
Solyc08g061370.1.1	Tomato	cytosol	2.72	18.97
Solyc02g033050.1.1	Tomato	nucleus	9.79	18.92
Solyc08g062060.1.1	Tomato	nucleus	1.65	18.87
Solyc08g077610.1.1	Tomato	nucleus	10.29	18.68
Solyc08g061410.1.1	Tomato	cytosol	6.75	18.68
Solyc08g077690.2.1	Tomato	nucleus	11.03	18.08
Solyc08g077600.1.1	Tomato	cytosol	5.51	17.05
Solyc08g061350.1.1	Tomato	mitochondrion	0.99	16.9
Solyc01g060460.1.1	Tomato	nucleus	10.54	16.82
Solyc04g056400.2.1	Tomato	cytosol, nucleus, plastid	4.86	15.99
Solyc01g109970.2.1	Tomato	extracellular	11.28	15.1
Solyc04g050150.2.1	Tomato	nucleus	14.9	14.87
Solyc01g049740.1.1	Tomato	endoplasmic reticulum, extracellular	2.88	14.52
Solyc08g074500.2.1	Tomato	cytosol, nucleus, plastid	15.06	14.43
Solyc08g062070.1.1	Tomato	cytosol	1.56	14.29
Solyc08g061390.1.1	Tomato	cytosol	2.72	13.31
Solyc08g077670.1.1	Tomato	cytosol	4.53	12.14
Solyc06g050510.2.1	Tomato	nucleus	11.52	10.88
Solyc04g050160.2.1	Tomato	nucleus	1.56	6.03
Solyc08g074520.1.1	Tomato	nucleus	2.22	4.12

Protein Annotations

MapMan:12.4.1.4.3	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0045951	GO:GO:0046686	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR038718	UniProt:K4AX75	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF756	SMART:SM00487	SMART:SM00490
InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc01g068280.2	EnsemblPlants:Solyc01g068280.2.1	UniParc:UPI0002763562
SEG:seg	:	:	:	:	:

Description

Protein CHROMATIN REMODELING 24 [Source:Projected from Arabidopsis thaliana (AT5G63950) UniProtKB/Swiss-Prot;Acc:Q8W103]

Coordinates

chr1:-:77413747..77427671

Molecular Weight (calculated)

137172.0 Da

IEP (calculated)

5.601

GRAVY (calculated)

-0.692

Length

1215 amino acids

Sequence
(BLAST)

0001: MSKSQQQPRS LNQRHNQILI SLSASHSKPP PDDMTKLEAR RGLNQNDDFP TFSFTIDSDS SPSPVRFSSN GIGNDAVPSF SGIADFSPDP EPSGEVEEIN
0101: DQSTFENDVV DFSPDSAKSS PLGGNEIDES KHEIQEELSD QPKDYSDYQS PGNGLKEIDE TENGIQEELS NPPENSFDSL DSLSFSGKKE IDQPTSGTKE
0201: DPLLSKIVDN SSSLSVDMER SEHVRENCEL SQEGQEDYEK TSNEGEEKIT KVKIKGRRRL CKISEDNNDS EEMKLKDDEE SGLLGITDFD SPPCQVKSAV
0301: QNEHGGSGNE IRDILNDLSS RLEILSIEKK RAPKPHDLTK KNEIPEYQSA GSSFSLSSGS SSDSTKESRI GGEIPKEYLK KIDSGTASNN NCVVHKFNDT
0401: RSSVGAPKRK EVKQMTGKSQ PMKNTISAYK FLEEGDANDS DDDCVVVGDE SAVTQVGRHN RKTRHEHKHS DDFDSHDFVS EEDHTYTLSG PKFNYGLPGK
0501: ITKMLYPHQR EGLKWLWSLH CLGKGGILGD DMGLGKTMQI CGYLAGLFYS KLIKRVLIVA PKTLLPHWIK ELTAVGLSQK IREYFATSAK LRNYELQYVL
0601: QDKGILLTTY DIVRTNVKSL CGDQYYEDRD EELTWDYMIL DEGHLIKNPS TQRAKSLHEI PCAHRIIISG TPLQNHLKEL WALFNFCCPG LLGDKQWFKE
0701: KYEHLILRGN DKNAYDRDKR IGSAVAKELR EHIQPYFLRR LKSEVFSDDS STSAKLSKKN EIIVWLKLTN CQRQLYTAFL KSEIVLSSFD RSPLAALTIL
0801: KKICDHPLLL TKRAAEEVLE EMDSTSNHDD RAVAERLVMQ MANVSEKLEE EVVSHDVSCK ITFILALLDN LIPGGHNVLI FSQTRKMLNH LQDALISNGF
0901: QFMRIDGTTK ATDRLKIVNE FQEGHGAPIF LLTSQVGGLG LTLTRADRVI VVDPAWNPSM DNQSVDRAYR IGQTKDVVVY RLMTTGTVEE KIYRKQVYKG
1001: GLFKTATEHK EQIRYFSQQD LRELFSLPKD GGFDISNTQK QLNEEHDHEH KMEETLKAHV KFLETLGIAG VSSHSLLFSK TAPVSAVQDE DEVKIARERM
1101: TYIGNSSSYT SVERPVDASQ YAFKPKDVNL QRKSVPTARV GRTESQIQDD LRRCYRMLAD KEKISKLFDN GQKLQGRIAH LREELETIRM KKDNKNEIID
1201: LDDDISEQFD RAVNV

Best Arabidopsis Sequence Match ( AT5G63950.1 )
(BLAST)

0001: MAENTASHRR KPRSLNDRHY SILQDLSAPP RQPPSSSHGE DEETKKSMIK LAGRRRLCKA LPKEDEADGY DDPDLVDFYS PVKGETSLDS AGIGNKFTSW
0101: DESKEANTEL AGEPNFSIIT DFCSPSPQLK QKEEMQGDGG RNEIMGILDD LTSKLGTMSI QKKKDSQSND FDACGVKSQV DKFDFEDAKS SFSLLSDLSK
0201: SSPDVVTTYN AGVNSIKDKQ GKSGFAIREE QTSKEFSREW EERISNVGKQ NSYSGRHFDD NSEDNRQGYN LDRGKSQCKE VDQSMKTTRH IEVSEKIRTV
0301: GRSNAAKLRD LDEDDDDDDC LILSGKKAAE MKINKPARSY NAKRHGYDER SLEDEGSITL TGLNLSYTLP GKIATMLYPH QREGLNWLWS LHTQGKGGIL
0401: GDDMGLGKTM QICSFLAGLF HSKLIKRALV VAPKTLLPHW MKELATVGLS QMTREYYGTS TKAREYDLHH ILQGKGILLT TYDIVRNNTK ALQGDDHYTD
0501: EDDEDGNKWD YMILDEGHLI KNPNTQRAKS LLEIPSSHRI IISGTPIQNN LKELWALFNF SCPGLLGDKN WFKQNYEHYI LRGTDKNATD REQRIGSTVA
0601: KNLREHIQPF FLRRLKSEVF GDDGATSKLS KKDEIVVWLR LTACQRQLYE AFLNSEIVLS AFDGSPLAAL TILKKICDHP LLLTKRAAED VLEGMDSTLT
0701: QEEAGVAERL AMHIADNVDT DDFQTKNDSI SCKLSFIMSL LENLIPEGHR VLIFSQTRKM LNLIQDSLTS NGYSFLRIDG TTKAPDRLKT VEEFQEGHVA
0801: PIFLLTSQVG GLGLTLTKAD RVIVVDPAWN PSTDNQSVDR AYRIGQTKDV IVYRLMTSAT VEEKIYRKQV YKGGLFKTAT EHKEQIRYFS QQDLRELFSL
0901: PKGGFDVSPT QQQLYEEHYN QIKLDEKLES HVKFLETLGI AGVSHHSLLF SKTAPIQAIQ KDEEEQIRRE TALLLGRASA SISQDTVING ADYAFKPKDV
1001: NLDKRINISP VDDKELSESV IKARLNRLTM LLQNKGTVSR LPDGGAKIQK QIAELTRELK DMKAAERINM PQVIDLEEDI SRKMQKGLNL

Arabidopsis Description

CHR24Protein CHROMATIN REMODELING 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8W103]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.