Factsheet for Solyc08g062000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g077650.1.1	Tomato	cytosol	11.25	84.62
Solyc08g061350.1.1	Tomato	mitochondrion	12.53	69.01
Solyc08g061340.1.1	Tomato	cytosol	38.36	67.26
Solyc08g077590.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	26.85	60.34
Solyc08g061410.1.1	Tomato	cytosol	64.45	57.4
Solyc08g077580.1.1	Tomato	cytosol	23.02	52.02
Solyc08g061990.1.1	Tomato	mitochondrion	51.15	51.95
Solyc01g068300.1.1	Tomato	cytosol	50.9	51.03
Solyc08g077610.1.1	Tomato	nucleus	78.52	45.89
Solyc02g033050.1.1	Tomato	nucleus	72.12	44.83
Solyc04g054440.1.1	Tomato	nucleus	72.89	43.51
Solyc01g068320.1.1	Tomato	cytosol	72.38	42.37
Solyc08g062070.1.1	Tomato	cytosol	13.3	39.1
Solyc08g077690.2.1	Tomato	nucleus	71.61	37.79
Solyc01g049740.1.1	Tomato	endoplasmic reticulum, extracellular	22.51	36.51
Solyc01g060460.1.1	Tomato	nucleus	70.59	36.27
Solyc08g077600.1.1	Tomato	cytosol	33.5	33.33
PGSC0003DMT400004673	Potato	nucleus	72.12	30.79
Solyc03g061640.1.1	Tomato	cytosol	12.79	30.12
Solyc08g077670.1.1	Tomato	cytosol	34.27	29.58
Os05t0392400-01	Rice	cytosol, nucleus	33.5	29.11
Solyc08g061370.1.1	Tomato	cytosol	12.02	27.01
VIT_02s0012g00110.t01	Wine grape	cytosol	43.73	26.51
Solyc08g062080.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	7.67	25.21
Solyc08g061390.1.1	Tomato	cytosol	15.86	25.0
Solyc08g061420.1.1	Tomato	cytosol	4.6	20.22
KRH39939	Soybean	nucleus	29.16	18.48
Solyc08g062060.1.1	Tomato	nucleus	4.86	17.92
Os02t0650800-00	Rice	cytosol	40.41	16.86
GSMUA_Achr7P06840_001	Banana	nucleus	38.36	15.91
TraesCS3A01G220700.1	Wheat	nucleus	40.15	14.87
TraesCS3B01G251000.1	Wheat	nucleus	39.9	14.7
TraesCS3A01G238800.1	Wheat	nucleus	39.64	14.66
TraesCS6A01G241100.1	Wheat	nucleus	39.13	13.43
AT3G24340.1	Thale cress	nucleus	38.36	13.25
TraesCS2D01G053900.1	Wheat	nucleus	35.81	12.89
KRH23851	Soybean	mitochondrion, nucleus	38.36	12.86
TraesCS3D01G231800.1	Wheat	nucleus	40.15	12.36
KRH46527	Soybean	nucleus	35.81	12.2
KXG31163	Sorghum	nucleus	38.87	11.89
AT1G05490.1	Thale cress	mitochondrion, nucleus	42.2	11.7
Solyc01g109970.2.1	Tomato	extracellular	26.6	11.47
KRH46528	Soybean	cytosol, extracellular, nucleus	36.32	11.4
TraesCS1D01G245400.1	Wheat	nucleus	42.71	11.25
TraesCS1A01G245700.1	Wheat	mitochondrion, nucleus	42.71	11.22
TraesCS1B01G256700.1	Wheat	mitochondrion, nucleus	42.71	11.19
OQU77943	Sorghum	mitochondrion	40.92	10.97
Solyc06g050510.2.1	Tomato	nucleus	30.69	9.32
Zm00001d047708_P001	Maize	cytosol	4.09	9.3
Solyc04g056410.2.1	Tomato	nucleus	12.79	8.52
Solyc07g053870.2.1	Tomato	plastid	18.41	8.12
Solyc04g056400.2.1	Tomato	cytosol, nucleus, plastid	6.91	7.32
Solyc04g050150.2.1	Tomato	nucleus	20.72	6.66
Solyc09g066480.2.1	Tomato	nucleus	20.2	6.51
Solyc01g068280.2.1	Tomato	nucleus	19.69	6.34
Solyc08g074500.2.1	Tomato	cytosol, nucleus, plastid	19.44	5.99
Solyc04g050160.2.1	Tomato	nucleus	0.51	0.63
Os02t0161300-01	Rice	extracellular	0.0	0.0
Os02t0762600-01	Rice	cytosol	0.0	0.0
Solyc08g074520.1.1	Tomato	nucleus	0.0	0.0

Protein Annotations

Gene3D:3.40.50.10810	Gene3D:3.40.50.300	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718
UniProt:K4CKY9	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR10799	PANTHER:PTHR10799:SF858	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc08g062000.1	EnsemblPlants:Solyc08g062000.1.1	UniParc:UPI000276AEC7	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:50299790..50301616

Molecular Weight (calculated)

45021.1 Da

IEP (calculated)

9.893

GRAVY (calculated)

-0.212

Length

391 amino acids

Sequence
(BLAST)

001: MVNHMLKLDE QIGHIRLVCS HVILEMNINV KAAMYPHQRG GFEFMWKHIM VDITFHNLNI KYFFLKKDDG TVGVFHCLSG AAKKSTPCTD GVAEILAKSK
101: SLLGIRYDLF RILTGEDGKG YKKALREILL KFPRLLVYEE GQTSRNENNL VWKALRKVEI EKRILLSQTP FQNNINEIHN TLCVVSPNIA VYLKQKWASL
201: SNSIDKNARA FENLRDIRSP FVHKCSENIK KKELLKRVPE NPGSFYEQNL MSLISVHPSL VENMKELSEL ESQLKERRCR LDTNIGVKMK FVIELIRICS
301: GWKERVIIFS REILYIDGKH DVNQRQISIN FVNDPKSDFK VFLASTKACS EGISLIGSSR VVLLDVLWNP SIEQQAISRV YRSGQTKFVH V

Best Arabidopsis Sequence Match ( AT1G05490.1 )
(BLAST)

0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP

Arabidopsis Description

CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.