Factsheet for Zm00001d047708_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g062060.1.1	Tomato	nucleus	15.12	24.53
Solyc08g061390.1.1	Tomato	cytosol	24.42	16.94
Solyc03g061640.1.1	Tomato	cytosol	15.7	16.27
Solyc08g061370.1.1	Tomato	cytosol	15.12	14.94
Zm00001d022576_P001	Maize	golgi, nucleus, plasma membrane	91.86	11.84
Solyc08g077670.1.1	Tomato	cytosol	22.09	8.39
PGSC0003DMT400017302	Potato	nucleus	30.23	8.35
Solyc04g054440.1.1	Tomato	nucleus	29.65	7.79
Solyc01g068320.1.1	Tomato	cytosol	30.23	7.78
Solyc08g077610.1.1	Tomato	nucleus	28.49	7.32
PGSC0003DMT400037430	Potato	nucleus	27.91	7.14
Solyc08g077600.1.1	Tomato	cytosol	15.7	6.87
Solyc02g033050.1.1	Tomato	nucleus	25.0	6.84
Solyc08g077690.2.1	Tomato	nucleus	28.49	6.61
Solyc01g060460.1.1	Tomato	nucleus	27.91	6.31
PGSC0003DMT400004629	Potato	nucleus	28.49	5.49
PGSC0003DMT400004673	Potato	nucleus	27.33	5.13
PGSC0003DMT400085944	Potato	cytosol	6.98	5.11
PGSC0003DMT400004672	Potato	nucleus	29.07	5.03
Solyc08g062000.1.1	Tomato	cytosol	9.3	4.09
Zm00001d024677_P003	Maize	cytosol	22.09	4.0
PGSC0003DMT400017313	Potato	nucleus	26.74	3.82
Zm00001d049605_P037	Maize	cytosol	21.51	3.79
Zm00001d051324_P001	Maize	nucleus	27.33	3.52
Solyc08g061410.1.1	Tomato	cytosol	8.14	3.19
Zm00001d038113_P001	Maize	mitochondrion, nucleus	25.58	3.07
PGSC0003DMT400038789	Potato	nucleus	19.19	2.98
Solyc01g049740.1.1	Tomato	endoplasmic reticulum, extracellular	3.49	2.49
Zm00001d013828_P002	Maize	plastid	11.05	2.16
Zm00001d018151_P003	Maize	nucleus	11.63	2.07
Zm00001d002950_P002	Maize	nucleus	11.63	1.85
Solyc08g062070.1.1	Tomato	cytosol	1.16	1.5
Zm00001d032801_P005	Maize	nucleus	11.05	1.28
Zm00001d040203_P003	Maize	cytosol	8.72	1.19
PGSC0003DMT400096321	Potato	nucleus	0.58	0.8
Zm00001d039160_P031	Maize	cytosol, mitochondrion, nucleus, plasma membrane	8.72	0.73
PGSC0003DMT400033315	Potato	nucleus	0.58	0.69
PGSC0003DMT400085993	Potato	cytosol	0.58	0.6
Solyc08g077580.1.1	Tomato	cytosol	0.58	0.58
Solyc01g068300.1.1	Tomato	cytosol	0.58	0.26
CDY06321	Canola	nucleus	0.0	0.0
Solyc08g061350.1.1	Tomato	mitochondrion	0.0	0.0
Bra031634.1-P	Field mustard	nucleus	0.0	0.0
HORVU3Hr1G014630.1	Barley	cytosol, nucleus, plastid	0.0	0.0
Solyc08g077650.1.1	Tomato	cytosol	0.0	0.0
PGSC0003DMT400088837	Potato	cytosol	0.0	0.0
PGSC0003DMT400090992	Potato	mitochondrion	0.0	0.0
Solyc08g077590.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	0.0	0.0
Solyc08g061990.1.1	Tomato	mitochondrion	0.0	0.0
Solyc08g061340.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d047708_P001	EnsemblPlants:Zm00001d047708_T001	EnsemblPlantsGene:Zm00001d047708	Gene3D:3.40.50.10810	InterPro:IPR038718	InterPro:SNF2-like_sf
PANTHER:PTHR10799	PANTHER:PTHR10799:SF792	ProteinID:AQL07327.1	UniParc:UPI000220AFF4	UniProt:A0A1D6PCH8	MapMan:35.1

Description

SNF2 domain-containing protein CLASSY 1

Coordinates

chr9:+:139685276..139686839

Molecular Weight (calculated)

19228.7 Da

IEP (calculated)

5.055

GRAVY (calculated)

-0.292

Length

172 amino acids

Sequence
(BLAST)

001: MADSEVVHES NTDLGKGGEH SLHDYVLDEQ LGLTCRLCNV VCIEAKDFFP PMFTGKDHER PERNHFGQDG HVLDLSFFEI CDPEFSKIKE SGNVWASITD
101: LEPKLLAHQR KAFEFIWKNL AGSLQLEEMD GSTSRGGCAV AHTPEAGKTL LLILFLVSYL KVHTQEAGHW SS

Best Arabidopsis Sequence Match ( AT5G20420.1 )
(BLAST)

0001: MKKRGFYNLK HPFDPCPFEF FCSGTWKPVE YMRIEDGMMT IRLLENGYVL EDIRPFQRLR LRSRKAALSD CICFLRPDID VCVLYRIHED DLEPVWVDAR
0101: IVSIERKPHE SECSCKINVR IYIDQGCIGS EKQRINRDSV VIGLNQISIL QKFYKEQSTD QFYRWRFSED CTSLMKTRLS LGKFLPDLSW LTVTSTLKSI
0201: VFQIRTVQTK MVYQIVTDEE GSSSTLSSMN ITLEDGVSLS KVVKFNPADI LDDSQDLEIK QETDYYQEED EVVELRRSKR RNVRPDIYTG CDYEPDTIDG
0301: WVRMMPYQFG KCAVNVESDE DEDDNNEDGD TNDDLYIPLS RLFIKKKKTN SREAKPKSRK GEIVVIDKRR VHGFGRKERK SELSVIPFTP VFEPIPLEQF
0401: GLNANSFGGG GSFSRSQYFD ETEKYRSKGM KYGKKMTEME EMMEADLCWK GPNQVKSFQK RTSRSSRSVA PKTEDSDEPR VYKKVTLSAG AYNKLIDTYM
0501: NNIESTIAAK DEPTSVVDQW EELKKTNFAF KLHGDMEKNL SEDGEGETSE NEMLWREMEL CLASSYILDD NEVRVDNEAF EKARSGCEHD YRLEEEIGMC
0601: CRLCGHVGSE IKDVSAPFAE HKKWTIETKH IEEDDIKTKL SHKEAQTKDF SMISDSSEML AAEESDNVWA LIPKLKRKLH VHQRRAFEFL WRNVAGSVEP
0701: SLMDPTSGNI GGCVISHSPG AGKTFLIIAF LTSYLKLFPG KRPLVLAPKT TLYTWYKEFI KWEIPVPVHL IHGRRTYCTF KQNKTVQFNG VPKPSRDVMH
0801: VLDCLEKIQK WHAHPSVLVM GYTSFTTLMR EDSKFAHRKY MAKVLRESPG LLVLDEGHNP RSTKSRLRKA LMKVGTDLRI LLSGTLFQNN FCEYFNTLCL
0901: ARPKFIHEVL MELDQKFKTN HGVNKAPHLL ENRARKLFLD IIAKKIDASV GDERLQGLNM LKNMTNGFID NYEGSGSGSG DALPGLQIYT LVMNSTDIQH
1001: KILTKLQDVI KTYFGYPLEV ELQITLAAIH PWLVTSSNCC TKFFNPQELS EIGKLKHDAK KGSKVMFVLN LIFRVVKREK ILIFCHNIAP IRMFTELFEN
1101: IFRWQRGREI LTLTGDLELF ERGRVIDKFE EPGNPSRVLL ASITACAEGI SLTAASRVIM LDSEWNPSKT KQAIARAFRP GQQKVVYVYQ LLSRGTLEED
1201: KYRRTTWKEW VSCMIFSEEF VADPSLWQAE KIEDDILREI VGEDKVKSFH MIMKNEKAST G

Arabidopsis Description

CLSY2SNF2 domain-containing protein CLASSY 2 [Source:UniProtKB/Swiss-Prot;Acc:F4K493]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.