Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400088837 | Potato | cytosol | 23.36 | 83.07 |
| PGSC0003DMT400090992 | Potato | mitochondrion | 26.79 | 73.47 |
| Solyc01g049740.1.1 | Tomato | endoplasmic reticulum, extracellular | 16.82 | 46.89 |
| PGSC0003DMT400004673 | Potato | nucleus | 63.24 | 46.4 |
| PGSC0003DMT400017302 | Potato | nucleus | 37.65 | 40.61 |
| PGSC0003DMT400004672 | Potato | nucleus | 59.82 | 40.4 |
| PGSC0003DMT400085944 | Potato | cytosol | 13.24 | 37.87 |
| PGSC0003DMT400004629 | Potato | nucleus | 49.4 | 37.22 |
| PGSC0003DMT400017313 | Potato | nucleus | 59.97 | 33.44 |
| PGSC0003DMT400038789 | Potato | nucleus | 50.6 | 30.74 |
| PGSC0003DMT400085993 | Potato | cytosol | 7.44 | 29.76 |
| Zm00001d047708_P001 | Maize | cytosol | 7.14 | 27.91 |
| VIT_02s0012g00110.t01 | Wine grape | cytosol | 25.3 | 26.36 |
| Os02t0650800-00 | Rice | cytosol | 26.34 | 18.89 |
| GSMUA_Achr7P06840_001 | Banana | nucleus | 24.85 | 17.71 |
| TraesCS3A01G220700.1 | Wheat | nucleus | 27.83 | 17.71 |
| TraesCS3B01G251000.1 | Wheat | nucleus | 27.53 | 17.44 |
| AT3G24340.1 | Thale cress | nucleus | 29.32 | 17.4 |
| TraesCS3A01G238800.1 | Wheat | nucleus | 27.23 | 17.31 |
| KRH23851 | Soybean | mitochondrion, nucleus | 28.87 | 16.64 |
| KRH39939 | Soybean | nucleus | 15.03 | 16.37 |
| KRH46527 | Soybean | nucleus | 26.79 | 15.68 |
| TraesCS6A01G241100.1 | Wheat | nucleus | 26.19 | 15.45 |
| KRH46528 | Soybean | cytosol, extracellular, nucleus | 28.57 | 15.41 |
| TraesCS3D01G231800.1 | Wheat | nucleus | 29.02 | 15.35 |
| TraesCS2D01G053900.1 | Wheat | nucleus | 24.4 | 15.1 |
| KXG31163 | Sorghum | nucleus | 28.12 | 14.79 |
| AT1G05490.1 | Thale cress | mitochondrion, nucleus | 29.32 | 13.97 |
| TraesCS1D01G245400.1 | Wheat | nucleus | 30.51 | 13.8 |
| TraesCS1B01G256700.1 | Wheat | mitochondrion, nucleus | 30.65 | 13.8 |
| TraesCS1A01G245700.1 | Wheat | mitochondrion, nucleus | 30.21 | 13.63 |
| Os05t0392400-01 | Rice | cytosol, nucleus | 9.08 | 13.56 |
| OQU77943 | Sorghum | mitochondrion | 28.42 | 13.1 |
| PGSC0003DMT400079488 | Potato | nucleus | 15.18 | 11.03 |
| PGSC0003DMT400061540 | Potato | nucleus | 20.83 | 10.89 |
| PGSC0003DMT400076122 | Potato | cytosol, nucleus, plastid | 8.33 | 7.71 |
| PGSC0003DMT400082782 | Potato | plastid | 8.48 | 6.42 |
| PGSC0003DMT400026641 | Potato | nucleus | 10.71 | 5.94 |
| Bra031634.1-P | Field mustard | nucleus | 1.64 | 1.89 |
| CDY06321 | Canola | nucleus | 1.49 | 1.72 |
| Os02t0161300-01 | Rice | extracellular | 0.6 | 0.78 |
| PGSC0003DMT400096321 | Potato | nucleus | 0.0 | 0.0 |
| PGSC0003DMT400033315 | Potato | nucleus | 0.0 | 0.0 |
| HORVU3Hr1G014630.1 | Barley | cytosol, nucleus, plastid | 0.0 | 0.0 |
| Os02t0762600-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.10.1.2 | Gene3D:3.40.50.10810 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M1B5D9 | InterPro:P-loop_NTPase |
| PFAM:PF00176 | EnsemblPlantsGene:PGSC0003DMG400014445 | PGSC:PGSC0003DMG400014445 | EnsemblPlants:PGSC0003DMT400037430 | PFscan:PS51192 | PANTHER:PTHR10799 |
| PANTHER:PTHR10799:SF858 | SMART:SM00487 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI000294A1AB |
| SEG:seg | : | : | : | : | : |
Description
ATP-dependent helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400014445]
Coordinates
chr12:-:49172758..49174973
Molecular Weight (calculated)
77219.3 Da
IEP (calculated)
4.240
GRAVY (calculated)
-0.621
Length
672 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPSGGDERN VENNGQRKFS PGTRESFTNQ PFVEEVSDDG ADSSEEESDG DVVLISEEEE EENGPNVVRE EEEEEDEEKK EDEEESDPDV IIREEKEEES
101: DHDVVIIKEE EEDEESDPDV VIIRENEEED ESDPNVVIIR EEEEEESDPD VVIIREEEEE EESDPDVVII REEGEEESDP DVVTIRGCRR RRVILMAAIE
201: SKEFTDTTSC SESEFRSSTD ALRKNRKKIL EESEFLKFIV KSIKNVNDHN KVTPPEKKEH VFVKETLPLI LGFEDQEPLP LEKEEWEKEI DNLFVEMNMC
301: IEELHIGFTN PSVSPMQSGQ LSDCQMENHH LVLDEQIGLI CSVCPYVHLE SKYICPPFAQ RTRGRYERKY FEESPSLLDV HGFRVSDFYG EGTVWDLVHQ
401: IAKATMYFHQ CEGFEFMWNN IAGDITLERL REPLFVSKGG CIISHPPGTG KTRLTIVFLQ SFLKLFPQCR PVIIAPSNLL LKWEAEFQKW AVDIPFHNLN
501: NKDFSLKEDE GTVGVFNCLS HAVKKNPHLK RMVKLQSWAK SQSVLGISYD LFRILTGEDG EGYAKETREI LLKSPGLLVL EEGLNGWNEQ SLVWKALRKV
601: ETEKRILLSG TPFKNNIKDL YNTLCVVSPK FAADFKQKWT SLSSSIDKNA RALEEIRDII SPLVHEFTLC GI
101: DHDVVIIKEE EEDEESDPDV VIIRENEEED ESDPNVVIIR EEEEEESDPD VVIIREEEEE EESDPDVVII REEGEEESDP DVVTIRGCRR RRVILMAAIE
201: SKEFTDTTSC SESEFRSSTD ALRKNRKKIL EESEFLKFIV KSIKNVNDHN KVTPPEKKEH VFVKETLPLI LGFEDQEPLP LEKEEWEKEI DNLFVEMNMC
301: IEELHIGFTN PSVSPMQSGQ LSDCQMENHH LVLDEQIGLI CSVCPYVHLE SKYICPPFAQ RTRGRYERKY FEESPSLLDV HGFRVSDFYG EGTVWDLVHQ
401: IAKATMYFHQ CEGFEFMWNN IAGDITLERL REPLFVSKGG CIISHPPGTG KTRLTIVFLQ SFLKLFPQCR PVIIAPSNLL LKWEAEFQKW AVDIPFHNLN
501: NKDFSLKEDE GTVGVFNCLS HAVKKNPHLK RMVKLQSWAK SQSVLGISYD LFRILTGEDG EGYAKETREI LLKSPGLLVL EEGLNGWNEQ SLVWKALRKV
601: ETEKRILLSG TPFKNNIKDL YNTLCVVSPK FAADFKQKWT SLSSSIDKNA RALEEIRDII SPLVHEFTLC GI
0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP
Arabidopsis Description
CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.