CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39939	Soybean	nucleus	47.43	89.63
KRH46527	Soybean	nucleus	74.61	75.78
Solyc08g077650.1.1	Tomato	cytosol	3.17	71.15
KRH46528	Soybean	cytosol, extracellular, nucleus	64.32	60.19
CDY59589	Canola	nucleus	7.8	51.7
CDY29038	Canola	nucleus	7.72	51.14
VIT_02s0012g00110.t01	Wine grape	cytosol	28.13	50.85
CDX77430	Canola	nucleus	28.99	50.22
PGSC0003DMT400033315	Potato	nucleus	6.09	48.97
HORVU6Hr1G061730.1	Barley	cytosol, nucleus	14.24	47.03
Solyc08g077590.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	6.95	46.55
Solyc08g077580.1.1	Tomato	cytosol	6.86	46.24
PGSC0003DMT400096321	Potato	nucleus	4.89	45.6
Os05t0392400-01	Rice	cytosol, nucleus	17.5	45.33
Solyc04g054440.1.1	Tomato	nucleus	24.87	44.27
Solyc01g068300.1.1	Tomato	cytosol	14.41	43.08
Solyc01g068320.1.1	Tomato	cytosol	24.53	42.81
PGSC0003DMT400017302	Potato	nucleus	22.81	42.7
Solyc08g077610.1.1	Tomato	nucleus	24.44	42.6
PGSC0003DMT400088837	Potato	cytosol	6.86	42.33
Solyc02g033050.1.1	Tomato	nucleus	22.73	42.13
Solyc08g077690.2.1	Tomato	nucleus	26.42	41.57
Solyc08g062060.1.1	Tomato	nucleus	3.77	41.51
Solyc03g061640.1.1	Tomato	cytosol	5.83	40.96
Solyc01g060460.1.1	Tomato	nucleus	26.67	40.87
Solyc08g061370.1.1	Tomato	cytosol	6.09	40.8
Solyc08g061410.1.1	Tomato	cytosol	15.27	40.55
Solyc08g062000.1.1	Tomato	cytosol	12.86	38.36
Solyc08g061390.1.1	Tomato	cytosol	8.15	38.31
Solyc08g061350.1.1	Tomato	mitochondrion	2.32	38.03
CDX94823	Canola	nucleus	31.56	37.78
CDX93009	Canola	nucleus	31.39	37.73
Solyc01g049740.1.1	Tomato	endoplasmic reticulum, extracellular	7.63	36.93
Bra015035.1-P	Field mustard	nucleus	32.76	36.66
CDY66441	Canola	nucleus	32.42	36.59
PGSC0003DMT400090992	Potato	mitochondrion	7.63	36.33
Solyc08g061340.1.1	Tomato	cytosol	6.69	34.98
Bra001944.1-P	Field mustard	nucleus	31.9	34.9
Solyc08g077600.1.1	Tomato	cytosol	11.75	34.86
Solyc08g061990.1.1	Tomato	mitochondrion	11.49	34.81
PGSC0003DMT400004629	Potato	nucleus	26.42	34.53
PGSC0003DMT400085993	Potato	cytosol	4.97	34.52
Os02t0650800-00	Rice	cytosol	26.93	33.51
GSMUA_Achr7P06840_001	Banana	nucleus	27.02	33.4
Solyc08g077670.1.1	Tomato	cytosol	12.95	33.33
AT3G24340.1	Thale cress	nucleus	31.9	32.86
PGSC0003DMT400004672	Potato	nucleus	27.87	32.66
PGSC0003DMT400004673	Potato	nucleus	25.64	32.64
Solyc08g062070.1.1	Tomato	cytosol	3.52	30.83
TraesCS3A01G220700.1	Wheat	nucleus	27.87	30.78
TraesCS3B01G251000.1	Wheat	nucleus	27.79	30.54
TraesCS3A01G238800.1	Wheat	nucleus	27.62	30.46
CDY47279	Canola	nucleus	33.79	29.47
PGSC0003DMT400085944	Potato	cytosol	5.83	28.94
PGSC0003DMT400037430	Potato	nucleus	16.64	28.87
AT1G05490.1	Thale cress	mitochondrion, nucleus	34.73	28.72
CDY10115	Canola	nucleus	33.7	28.5
TraesCS6A01G241100.1	Wheat	nucleus	27.02	27.66
TraesCS2D01G053900.1	Wheat	nucleus	25.47	27.35
PGSC0003DMT400017313	Potato	nucleus	28.22	27.3
HORVU6Hr1G061720.1	Barley	cytosol	8.15	26.76
PGSC0003DMT400038789	Potato	nucleus	25.3	26.67
TraesCS3D01G231800.1	Wheat	nucleus	28.9	26.54
KXG31163	Sorghum	nucleus	28.64	26.13
HORVU3Hr1G054100.2	Barley	nucleus	28.39	26.02
KRH05276	Soybean	cytosol, nucleus	5.4	25.4
Bra015430.1-P	Field mustard	nucleus	34.13	25.14
Zm00001d051324_P001	Maize	nucleus	28.73	25.06
Zm00001d038113_P001	Maize	mitochondrion, nucleus	30.36	24.67
HORVU1Hr1G062970.3	Barley	mitochondrion	31.22	24.56
TraesCS1A01G245700.1	Wheat	mitochondrion, nucleus	31.22	24.45
TraesCS1D01G245400.1	Wheat	nucleus	31.05	24.38
TraesCS1B01G256700.1	Wheat	mitochondrion, nucleus	31.05	24.25
OQU77943	Sorghum	mitochondrion	29.93	23.94
KRH32203	Soybean	cytosol, mitochondrion, nucleus	5.49	23.19
KRH27453	Soybean	cytosol	17.07	22.54
KRH20806	Soybean	cytosol	17.5	21.41
KRG97679	Soybean	nucleus	22.13	20.89
KRG88505	Soybean	endoplasmic reticulum, nucleus	21.53	20.83
KRH73247	Soybean	nucleus	21.78	19.39
KRH59600	Soybean	cytosol, nucleus, plastid	10.89	16.2
KRH25617	Soybean	nucleus	10.63	14.25
KRH77966	Soybean	nucleus	10.89	14.11
KRH40956	Soybean	nucleus	12.18	13.79
KRH34128	Soybean	nucleus	13.12	13.55
KRG92726	Soybean	nucleus	15.01	11.78
KRH19578	Soybean	nucleus	12.35	11.76
KRH77275	Soybean	cytosol	0.69	8.7
KRH28211	Soybean	mitochondrion	0.69	8.7
KRH40039	Soybean	mitochondrion	13.04	7.43
KRH23760	Soybean	mitochondrion	12.95	7.38
HORVU3Hr1G014620.1	Barley	nucleus	0.6	6.48
Os02t0762600-01	Rice	cytosol	0.0	0.0

Protein Annotations

MapMan:16.10.1.2	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EMBL:ACUP02007161	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G006900
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	UniProt:K7LSB6	EnsemblPlants:KRH23851	ProteinID:KRH23851
ProteinID:KRH23851.1	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR10799	PANTHER:PTHR10799:SF858	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF52540	UniParc:UPI00029640BD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:517991..522104

Molecular Weight (calculated)

132517.0 Da

IEP (calculated)

6.704

GRAVY (calculated)

-0.728

Length

1166 amino acids

Sequence
(BLAST)

0001: MYRGVPVACR TRSKRGRVVG SGLIMGQKKK KVHDHEPVSL KRVRVSERGF DCSGGHAGDP IVIGDSGDDV SEAEEGLRHT EKRFLVEKEW KSEEGKRCSV
0101: FVDKVDNFGN DDYACVPENR VILPDDSYGD NQSEKEHCAD KSGSDDSFLC LTESEDGATS DEDFQVDYDE NDCCSSSEDS DSSSYDDDER GGYSKTVKER
0201: VRKVEGETES SGVCKRKGGR KDNEEGEQWI GADCASATSS KSEIYKQEAR NAAQKHESKR VKSANVDAEV FGDHWKSSGC SMPSEAEALE HRKKRDTGHQ
0301: SASLQKKTEY STMIKKNLDD HEGKKHHHVK GDSAKVVTKK DRKGRKHKYG FNSNKCEKVR VVDDETGDKD ELHEVLRMPS RTKNRCFKLF NECFWGKNDS
0401: VKDDSNQLEE KDDDFGQGQT KPLASRETIP LDWNFMKKEP IENLEFEKEL DILWGEMDML LRGEEIGSQV DNIGTNEARE NEENSASQCK HDTIFNEEIG
0501: IYCRWCGWIA TEIKYITPPF VDSERCCRRV SSGGGNTSQF DGDLFNDPGD DSEAVWSHNE GTVWDLIPDI KQSLYPHQQE GFEFIWTNLA GTTDLAKLKR
0601: VDPCSEGGCI VSHAPGTGKT RLTMVFLQTY LQSFPKCLPI IIAPANILLT WEDELRKWNI GIPFHNLNNS ELSGKEKLIN EVDWSGNQKQ NKDAIRMVKL
0701: CSWYKEKSIL LISYNLYEKL AGSTAEGDGK KEKKNNKMKK KKKRARPREY IESGMGKVLR DYPGLLVLDE GHTPRNQNSY IWKVLSESRT KKRILLSGTP
0801: FQNNFLELYN ILCLMKPSFP DSIPQELKKF CQSRQMQERK DVSWDWEPVS SGNTADEKIK LLKLLMNPFV HVHKGSILQK NLPGLRDCVL VLKPDILQQE
0901: TLESIEYSQS ALNFEHKLAL VSVHPSLFLN CSLSKKEESV VDKGKLEKLR LNPYGGVKTK FLFEFIRLCD AVNEKVLIFS QFIDTLCLIK DQLESAFNWS
1001: VGTEVLYMYG KLDHKQKQSL IRSFNDSNSQ AKVLLASIKA SSEGINLIGA SRVVLLDVVW NPSVERQAIC RAYRLGQKRV VFTYHLLAQG TPECTKYCKQ
1101: AEKNRLSELV FSNRNAESHK LKSSGVMLED IEDRVLDLMV QHKKLKDMFG ECLVQPKERY LETLGP

Best Arabidopsis Sequence Match ( AT1G05490.1 )
(BLAST)

0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP

Arabidopsis Description

CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.