CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0028g03440.t01	Wine grape	plastid	72.64	72.31
PGSC0003DMT400082782	Potato	plastid	70.11	68.69
Solyc07g053870.2.1	Tomato	plastid	69.31	67.98
AT1G03750.1	Thale cress	plastid	64.94	65.55
GSMUA_Achr7P00330_001	Banana	plastid	65.4	65.48
TraesCS2A01G185300.1	Wheat	plastid	62.87	63.09
TraesCS2B01G222000.1	Wheat	plastid	62.64	62.86
TraesCS2D01G202400.1	Wheat	plastid	62.41	62.63
HORVU2Hr1G037590.4	Barley	plastid	62.76	62.26
Os05t0247900-01	Rice	plastid	61.03	62.03
EER91354	Sorghum	plastid	63.22	61.94
Zm00001d013828_P002	Maize	plastid	61.95	61.32
KRH32203	Soybean	cytosol, mitochondrion, nucleus	11.84	37.32
CDY37413	Canola	mitochondrion, nucleus	65.63	35.64
CDY32510	Canola	mitochondrion, nucleus	65.4	35.43
Bra032544.1-P	Field mustard	nucleus	65.52	34.69
KRH05276	Soybean	cytosol, nucleus	8.28	29.03
KRH59600	Soybean	cytosol, nucleus, plastid	21.26	23.6
KRH77966	Soybean	nucleus	20.8	20.11
KRH40956	Soybean	nucleus	22.3	18.84
KRH19578	Soybean	nucleus	25.06	17.8
KRH34128	Soybean	nucleus	21.03	16.21
KRH39939	Soybean	nucleus	10.57	14.91
KRH27453	Soybean	cytosol	14.71	14.5
KRH20806	Soybean	cytosol	14.71	13.43
KRG92726	Soybean	nucleus	22.18	13.0
KRH23851	Soybean	mitochondrion, nucleus	14.25	10.63
KRH46527	Soybean	nucleus	14.02	10.63
KRG97679	Soybean	nucleus	14.83	10.45
KRG88505	Soybean	endoplasmic reticulum, nucleus	14.25	10.29
KRH46528	Soybean	cytosol, extracellular, nucleus	14.25	9.95
KRH73247	Soybean	nucleus	14.6	9.69
KRH40039	Soybean	mitochondrion	22.07	9.38
KRH23760	Soybean	mitochondrion	21.95	9.33
KRH77275	Soybean	cytosol	0.11	1.09
KRH28211	Soybean	mitochondrion	0.11	1.09

Protein Annotations

EntrezGene:100781003	MapMan:12.4.1.4.3	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EMBL:ACUP02007299	ncoils:Coil
EnsemblPlantsGene:GLYMA_12G115800	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0016020	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1LS51	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR038718	EnsemblPlants:KRH25617	ProteinID:KRH25617	ProteinID:KRH25617.1	InterPro:P-loop_NTPase	PFAM:PF00176
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF804	SMART:SM00487
SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI000233CBE5	SEG:seg

Description

hypothetical protein

Coordinates

chr12:+:11598507..11605137

Molecular Weight (calculated)

99041.7 Da

IEP (calculated)

7.801

GRAVY (calculated)

-0.454

Length

870 amino acids

Sequence
(BLAST)

001: MSLRALKESL RPCSTLKPSS SSSITQTQPY SILRESDSLF PIHRKPPKSS LSHQLRRLDD SLTQTHSKTL QQQQQQQEEK EEEPEIKITK FASPKLPQFQ
101: FDHTGPFEPL LLSSHGEFPP VQVPASINCR LLEHQREGVR FLYGLYKNNH GGILGDDMGL GKTIQAIAFL AAVFAKEGHS TLNENHVEKR DPALIICPTS
201: VIHNWESEFS KWSNFSVSIY HGANRNLIYD KLEANEVEIL ITSFDTYRIH GSSLLDINWN IVIIDEAHRL KNEKSKLYKA CLEIKTLRRY GLTGTAMQNK
301: IMELFNLFDW VAPGSLGTRE HFREFYDEPL KHGQRSTAPD RFVQIANKRK QHLVAVLHKY LLRRTKEETI GHLMMGKEDN IVFCAMSDVQ KRVYRRMLQL
401: PDIQCLINKN LPCSCGSPLT QVECCKRIVP DGAIWPYLHR DNPDGCDSCP FCLVLPCLVK LQQISNHLEL IKPNPKDDPD KQNKDAEFAA AVFGPDIDLV
501: GGNTQNESFM GLSDVTHCGK MRALEKLLYS WFSQGDKVLL FSYSVRMLDI LEKFLIRKGY CFSRLDGSTP TNLRQSLVDD FNSSPSKQVF LISTRAGGLG
601: LNLVSANRVV IFDPNWNPAQ DLQAQDRSFR FGQKRHVVVF RLLAAGSLEE LVYSRQVYKQ QLSNIAVSGK MEKRYFEGVQ DCKEFQGELF GISNLFRDLS
701: DKLFTGEIIE LHEEHGHETE QPEEVNLSEE ETSSSVLESE TRLCNKSVRD ATSKPDLVDL GIVYTHRNED IVNFGPGIQG KIDTSIPLDD SLVKPSISLD
801: LDHQRKKPDS IPKKQKVPLI DERKRTQYRL LAQSLGMGEL AFSKWLLSAT PLEREKVLLD FKKKKKIPNG

Best Arabidopsis Sequence Match ( AT1G03750.1 )
(BLAST)

001: MSLLHTFKET LKPCGSFPSS SSLRVSSTQE LEPSRKPPKS SLSQQLLRLD DSYFLPSKHE SKISKTQVED FDHNEDDHKR NIKFDEEEVD EDDERSIEFG
101: RPGLSRAEFD YSGPYEPLML SSIGEIPIIH VPASINCRLL EHQREGVKFM YNLYKNNHGG ILGDDMGLGK TIQTIAFLAA VYGKDGDAGE SCLLESDKGP
201: VLIICPSSII HNWESEFSRW ASFFKVSVYH GSNRDMILEK LKARGVEVLV TSFDTFRIQG PVLSGINWEI VIADEAHRLK NEKSKLYEAC LEIKTKKRIG
301: LTGTVMQNKI SELFNLFEWV APGSLGTREH FRDFYDEPLK LGQRATAPER FVQIADKRKQ HLGSLLRKYM LRRTKEETIG HLMMGKEDNV VFCQMSQLQR
401: RVYQRMIQLP EIQCLVNKDN PCACGSPLKQ SECCRRIVPD GTIWSYLHRD NHDGCDSCPF CLVLPCLMKL QQISNHLELI KPNPKDEPEK QKKDAEFVST
501: VFGTDIDLLG GISASKSFMD LSDVKHCGKM RALEKLMASW ISKGDKILLF SYSVRMLDIL EKFLIRKGYS FARLDGSTPT NLRQSLVDDF NASPSKQVFL
601: ISTKAGGLGL NLVSANRVVI FDPNWNPSHD LQAQDRSFRY GQKRHVVVFR LLSAGSLEEL VYTRQVYKQQ LSNIAVAGKM ETRYFEGVQD CKEFQGELFG
701: ISNLFRDLSD KLFTSDIVEL HRDSNIDENK KRSLLETGVS EDEKEEEVMC SYKPEMEKPI LKDLGIVYAH RNEDIINIGE TTTSTSQRLN GDGNSADRKK
801: KKRKGCSEEE DMSSSNREQK REKYKMLAEF KGMEILEFSR WVLSASPFDR EKLLQDFLER VK

Arabidopsis Description

SWI2Switch 2 [Source:UniProtKB/Swiss-Prot;Acc:F4I2H2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.