Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32510 | Canola | mitochondrion, nucleus | 97.5 | 99.75 |
| AT1G03750.1 | Thale cress | plastid | 45.1 | 85.96 |
| VIT_12s0028g03440.t01 | Wine grape | plastid | 35.3 | 66.36 |
| KRH25617 | Soybean | nucleus | 34.69 | 65.52 |
| PGSC0003DMT400082782 | Potato | plastid | 34.33 | 63.51 |
| Solyc07g053870.2.1 | Tomato | plastid | 33.84 | 62.68 |
| GSMUA_Achr7P00330_001 | Banana | plastid | 32.74 | 61.91 |
| TraesCS2D01G202400.1 | Wheat | plastid | 31.65 | 59.98 |
| HORVU2Hr1G037590.4 | Barley | plastid | 31.89 | 59.75 |
| TraesCS2A01G185300.1 | Wheat | plastid | 31.53 | 59.75 |
| TraesCS2B01G222000.1 | Wheat | plastid | 31.47 | 59.63 |
| Zm00001d013828_P002 | Maize | plastid | 31.47 | 58.82 |
| EER91354 | Sorghum | plastid | 31.77 | 58.78 |
| Os05t0247900-01 | Rice | plastid | 30.31 | 58.18 |
| Bra022395.1-P | Field mustard | nucleus | 11.75 | 21.14 |
| Bra024192.1-P | Field mustard | nucleus | 12.78 | 18.09 |
| Bra021841.1-P | Field mustard | cytosol | 7.55 | 16.23 |
| Bra024250.1-P | Field mustard | cytosol | 11.08 | 15.78 |
| Bra015035.1-P | Field mustard | nucleus | 7.36 | 11.61 |
| Bra001944.1-P | Field mustard | nucleus | 7.36 | 11.35 |
| Bra021058.1-P | Field mustard | nucleus | 7.79 | 10.07 |
| Bra002302.1-P | Field mustard | cytosol | 7.36 | 9.71 |
| Bra000888.1-P | Field mustard | cytosol | 2.68 | 9.59 |
| Bra007061.1-P | Field mustard | mitochondrion | 11.08 | 8.89 |
| Bra015430.1-P | Field mustard | nucleus | 7.85 | 8.15 |
| Bra018612.1-P | Field mustard | nucleus | 11.32 | 7.18 |
| Bra031634.1-P | Field mustard | nucleus | 1.16 | 3.27 |
Protein Annotations
| Gene3D:1.10.510.10 | MapMan:12.4.1.4.3 | MapMan:18.4.3.1.8 | Gene3D:3.30.200.20 | Gene3D:3.40.50.10810 | EnsemblPlantsGene:Bra032544 |
| EnsemblPlants:Bra032544.1 | EnsemblPlants:Bra032544.1-P | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004672 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006464 | GO:GO:0006468 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016740 | GO:GO:0019538 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR000719 | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | InterPro:Kinase-like_dom_sf | UniProt:M4EUR2 |
| InterPro:P-loop_NTPase | PFAM:PF00069 | PFAM:PF00176 | PFAM:PF00271 | ScanProsite:PS00107 | ScanProsite:PS00108 |
| PFscan:PS50011 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24056 | PANTHER:PTHR24056:SF326 | InterPro:Prot_kinase_dom |
| InterPro:Protein_kinase_ATP_BS | SMART:SM00220 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N |
| SUPFAM:SSF52540 | SUPFAM:SSF56112 | InterPro:Ser/Thr_kinase_AS | UniParc:UPI0002543691 | SEG:seg | : |
Description
AT1G03750 (E=0.0) CHR9 | SWI2 (SWITCH 2); ATP binding / DNA binding / helicase/ nucleic acid binding
Coordinates
chrA09:-:36543528..36551429
Molecular Weight (calculated)
186748.0 Da
IEP (calculated)
8.470
GRAVY (calculated)
-0.571
Length
1643 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGCVSSKHRL FRRKSTLKES SVKRSSAIDS PRINDGIQQG DGFDRSSSRG EAKDKLVDSE TLSSTRFNDH PEIVDHVVQA VHDQELARAS SAVVEPDLEI
0101: GPNVTKPKLD RWNSRDSKVH MDHDQELTRG LSDVVKHDLE IGPNVLKQKL DQWNSNDSKV RLVESQKLSS KRFSDHHHVE KEPENLGAEA SVQAVPWEVK
0201: KNQSVIVSRD IELKQAWPTW LVSVAGEALV DWAPRRASTF EKLEKIGQGT YSSVYRARDL IHNKIVALKK VRFDLNDIES VKFMAREIIV MRRLDHPNVL
0301: KLEALITDHV SSSLYLVFEY MDHDLLGLSS LPGVKFSEPQ VKCYMQQLLS GLEHCHSRGV LHRDIKGSNL LIDRNGVLKI ADFGLATFFD PAKTIPLTSH
0401: VVTLWYRPPE LLLGASHYGV GVDLWSTGCI LGELYAGKPI LPGKTEVEQL HKIFKLCGSP TESYWRKHNL PSSAGFRSRV PYRRKLSEMF KDFPTSVLLL
0501: LETLLSIDPD HRNSADSALE SEYFKTKPFA CDPSCLPKYP PSKEIDANER DEAKTQRQMV EKQERQESQA ISHKRKYVPP IKANHLSVTI EKQYLDLKRR
0601: NDSFKSFKEE RTPNGQVPGY QNMNTRNNQT GERGSHSGPF MSKRNMAKST IHVKENVPAP RYPPSRVNPK ILTSSLSSKA LLDQPVMDQR KIDRRVYNRA
0701: DTMDSRRMTT PVDLAWYNPS DSNIYMSRPL LAQPSRVDQM LEEHDIQLQE CNRQAKKSRE GKTDKALDFL SLWQRDRLAM SSLLHTFKQT LKPCSTFPSS
0801: SSSSSQTSST QELEPTRKPP KSSLSQQLLR LDDSYFLPSK HESRISNTQV EDSNLLPEET HKRSIKFDEE DDEISIEFGR PGLNRVEFDY SGPYEPLVLS
0901: SIGEIPIIQV PASINCRLLE HQREGVKFLF NLYRNNHGGI LGDDMGLGKT IQTIAFLAGV YGKDSDAAGT DTSVSDSQKG PVLIICPSSV IHNWESEFSR
1001: WASFFKVSVY HGANRDTILE KLNARGVEVL VTSFDTFRIQ GPVLSEINWE IVIADEAHRL KNEKSKLYEA CLKIKTKKRL GLTGTVMQNK ITELFNLFEW
1101: VAPGSLGTRE HFREYYDEPL KQGQRATAPE RFVHIAEKRK QHLVSVLSKY MLRRTKEETI GHLMMGKEDN VVFCQMSELQ KRVYQRMLQL PEIQCLVNKD
1201: KPCACGSPLK QSECCRRIVP DGPIWSYIHR DSPDGCDSCP FCLVLPCLVK LQQVSNHLEL VKPNARDEPE KQKKDADFVS AVFGSDIDLA GGVAASESFM
1301: DLSDVKHCGK MRALEKLMAS WISKGDKILL FSYSVRMLDI LEKFLIRKGY SFARLDGSTP TNLRQSLVDD FNASPSKQVF LISTRAGGLG LNLVSANRVV
1401: IFDPNWNPSH DLQAQDRSFR YGQKRHVVVF RLLAAGSLEE LVYTRQVYKQ QLSNIAVAGK METRYFEGVQ DCKEFQGELF GISNLFRDLS DKLFTSEIVE
1501: LRKDSKKGVS DDEEEILCSS KQETQEPMLG DLGIVYAHRN EDIINGGRTA TSTSSQRFNG EGDSNENLEC ADHKKKKKRK GGSEEEEGMS FSKRERKREK
1601: YKMLAEFKGM EIMEFSRWVL SASPFVREKL LQEFSDRVKY QTS
0101: GPNVTKPKLD RWNSRDSKVH MDHDQELTRG LSDVVKHDLE IGPNVLKQKL DQWNSNDSKV RLVESQKLSS KRFSDHHHVE KEPENLGAEA SVQAVPWEVK
0201: KNQSVIVSRD IELKQAWPTW LVSVAGEALV DWAPRRASTF EKLEKIGQGT YSSVYRARDL IHNKIVALKK VRFDLNDIES VKFMAREIIV MRRLDHPNVL
0301: KLEALITDHV SSSLYLVFEY MDHDLLGLSS LPGVKFSEPQ VKCYMQQLLS GLEHCHSRGV LHRDIKGSNL LIDRNGVLKI ADFGLATFFD PAKTIPLTSH
0401: VVTLWYRPPE LLLGASHYGV GVDLWSTGCI LGELYAGKPI LPGKTEVEQL HKIFKLCGSP TESYWRKHNL PSSAGFRSRV PYRRKLSEMF KDFPTSVLLL
0501: LETLLSIDPD HRNSADSALE SEYFKTKPFA CDPSCLPKYP PSKEIDANER DEAKTQRQMV EKQERQESQA ISHKRKYVPP IKANHLSVTI EKQYLDLKRR
0601: NDSFKSFKEE RTPNGQVPGY QNMNTRNNQT GERGSHSGPF MSKRNMAKST IHVKENVPAP RYPPSRVNPK ILTSSLSSKA LLDQPVMDQR KIDRRVYNRA
0701: DTMDSRRMTT PVDLAWYNPS DSNIYMSRPL LAQPSRVDQM LEEHDIQLQE CNRQAKKSRE GKTDKALDFL SLWQRDRLAM SSLLHTFKQT LKPCSTFPSS
0801: SSSSSQTSST QELEPTRKPP KSSLSQQLLR LDDSYFLPSK HESRISNTQV EDSNLLPEET HKRSIKFDEE DDEISIEFGR PGLNRVEFDY SGPYEPLVLS
0901: SIGEIPIIQV PASINCRLLE HQREGVKFLF NLYRNNHGGI LGDDMGLGKT IQTIAFLAGV YGKDSDAAGT DTSVSDSQKG PVLIICPSSV IHNWESEFSR
1001: WASFFKVSVY HGANRDTILE KLNARGVEVL VTSFDTFRIQ GPVLSEINWE IVIADEAHRL KNEKSKLYEA CLKIKTKKRL GLTGTVMQNK ITELFNLFEW
1101: VAPGSLGTRE HFREYYDEPL KQGQRATAPE RFVHIAEKRK QHLVSVLSKY MLRRTKEETI GHLMMGKEDN VVFCQMSELQ KRVYQRMLQL PEIQCLVNKD
1201: KPCACGSPLK QSECCRRIVP DGPIWSYIHR DSPDGCDSCP FCLVLPCLVK LQQVSNHLEL VKPNARDEPE KQKKDADFVS AVFGSDIDLA GGVAASESFM
1301: DLSDVKHCGK MRALEKLMAS WISKGDKILL FSYSVRMLDI LEKFLIRKGY SFARLDGSTP TNLRQSLVDD FNASPSKQVF LISTRAGGLG LNLVSANRVV
1401: IFDPNWNPSH DLQAQDRSFR YGQKRHVVVF RLLAAGSLEE LVYTRQVYKQ QLSNIAVAGK METRYFEGVQ DCKEFQGELF GISNLFRDLS DKLFTSEIVE
1501: LRKDSKKGVS DDEEEILCSS KQETQEPMLG DLGIVYAHRN EDIINGGRTA TSTSSQRFNG EGDSNENLEC ADHKKKKKRK GGSEEEEGMS FSKRERKREK
1601: YKMLAEFKGM EIMEFSRWVL SASPFVREKL LQEFSDRVKY QTS
001: MSLLHTFKET LKPCGSFPSS SSLRVSSTQE LEPSRKPPKS SLSQQLLRLD DSYFLPSKHE SKISKTQVED FDHNEDDHKR NIKFDEEEVD EDDERSIEFG
101: RPGLSRAEFD YSGPYEPLML SSIGEIPIIH VPASINCRLL EHQREGVKFM YNLYKNNHGG ILGDDMGLGK TIQTIAFLAA VYGKDGDAGE SCLLESDKGP
201: VLIICPSSII HNWESEFSRW ASFFKVSVYH GSNRDMILEK LKARGVEVLV TSFDTFRIQG PVLSGINWEI VIADEAHRLK NEKSKLYEAC LEIKTKKRIG
301: LTGTVMQNKI SELFNLFEWV APGSLGTREH FRDFYDEPLK LGQRATAPER FVQIADKRKQ HLGSLLRKYM LRRTKEETIG HLMMGKEDNV VFCQMSQLQR
401: RVYQRMIQLP EIQCLVNKDN PCACGSPLKQ SECCRRIVPD GTIWSYLHRD NHDGCDSCPF CLVLPCLMKL QQISNHLELI KPNPKDEPEK QKKDAEFVST
501: VFGTDIDLLG GISASKSFMD LSDVKHCGKM RALEKLMASW ISKGDKILLF SYSVRMLDIL EKFLIRKGYS FARLDGSTPT NLRQSLVDDF NASPSKQVFL
601: ISTKAGGLGL NLVSANRVVI FDPNWNPSHD LQAQDRSFRY GQKRHVVVFR LLSAGSLEEL VYTRQVYKQQ LSNIAVAGKM ETRYFEGVQD CKEFQGELFG
701: ISNLFRDLSD KLFTSDIVEL HRDSNIDENK KRSLLETGVS EDEKEEEVMC SYKPEMEKPI LKDLGIVYAH RNEDIINIGE TTTSTSQRLN GDGNSADRKK
801: KKRKGCSEEE DMSSSNREQK REKYKMLAEF KGMEILEFSR WVLSASPFDR EKLLQDFLER VK
101: RPGLSRAEFD YSGPYEPLML SSIGEIPIIH VPASINCRLL EHQREGVKFM YNLYKNNHGG ILGDDMGLGK TIQTIAFLAA VYGKDGDAGE SCLLESDKGP
201: VLIICPSSII HNWESEFSRW ASFFKVSVYH GSNRDMILEK LKARGVEVLV TSFDTFRIQG PVLSGINWEI VIADEAHRLK NEKSKLYEAC LEIKTKKRIG
301: LTGTVMQNKI SELFNLFEWV APGSLGTREH FRDFYDEPLK LGQRATAPER FVQIADKRKQ HLGSLLRKYM LRRTKEETIG HLMMGKEDNV VFCQMSQLQR
401: RVYQRMIQLP EIQCLVNKDN PCACGSPLKQ SECCRRIVPD GTIWSYLHRD NHDGCDSCPF CLVLPCLMKL QQISNHLELI KPNPKDEPEK QKKDAEFVST
501: VFGTDIDLLG GISASKSFMD LSDVKHCGKM RALEKLMASW ISKGDKILLF SYSVRMLDIL EKFLIRKGYS FARLDGSTPT NLRQSLVDDF NASPSKQVFL
601: ISTKAGGLGL NLVSANRVVI FDPNWNPSHD LQAQDRSFRY GQKRHVVVFR LLSAGSLEEL VYTRQVYKQQ LSNIAVAGKM ETRYFEGVQD CKEFQGELFG
701: ISNLFRDLSD KLFTSDIVEL HRDSNIDENK KRSLLETGVS EDEKEEEVMC SYKPEMEKPI LKDLGIVYAH RNEDIINIGE TTTSTSQRLN GDGNSADRKK
801: KKRKGCSEEE DMSSSNREQK REKYKMLAEF KGMEILEFSR WVLSASPFDR EKLLQDFLER VK
Arabidopsis Description
SWI2Switch 2 [Source:UniProtKB/Swiss-Prot;Acc:F4I2H2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.