Factsheet for Bra000888.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67491	Canola	cytosol	33.77	98.1
CDY16534	Canola	nucleus	88.89	93.58
Bra021841.1-P	Field mustard	cytosol	77.12	46.34
VIT_03s0038g04290.t01	Wine grape	nucleus	19.39	40.27
AT2G21450.2	Thale cress	nucleus	64.05	35.72
Os08t0289400-00	Rice	cytosol, nucleus	29.85	25.95
TraesCS2D01G143100.1	Wheat	cytosol	34.2	25.32
Os07t0434500-01	Rice	cytoskeleton, cytosol, nucleus	32.9	22.47
VIT_06s0004g08480.t01	Wine grape	mitochondrion, plastid	31.59	21.29
KRH27453	Soybean	cytosol	39.0	20.27
KRH20806	Soybean	cytosol	40.74	19.62
VIT_03s0038g00030.t01	Wine grape	nucleus	40.3	19.45
Os08t0243866-00	Rice	endoplasmic reticulum	27.23	19.35
PGSC0003DMT400079488	Potato	nucleus	38.34	19.03
Solyc01g109970.2.1	Tomato	extracellular	37.47	18.96
EER92800	Sorghum	nucleus, plastid	36.17	17.57
TraesCS4D01G279200.1	Wheat	cytosol	36.38	17.56
TraesCS4B01G280600.1	Wheat	nucleus	36.38	17.49
TraesCS2B01G164300.3	Wheat	nucleus	36.38	17.47
TraesCS2A01G140400.2	Wheat	cytosol	36.38	17.47
Os06t0255700-01	Rice	cytosol	35.73	17.34
TraesCS2B01G208700.1	Wheat	cytosol	34.42	17.25
TraesCS5A01G340400.1	Wheat	nucleus	35.51	17.01
TraesCS2D01G189900.1	Wheat	nucleus	35.08	16.91
TraesCS5D01G344400.1	Wheat	nucleus	35.29	16.91
TraesCS4A01G022800.1	Wheat	mitochondrion, plastid	36.6	16.87
Zm00001d024677_P003	Maize	cytosol	34.86	16.84
KXG24379	Sorghum	cytosol	35.29	16.7
Zm00001d049605_P037	Maize	cytosol	35.29	16.58
HORVU2Hr1G034330.2	Barley	mitochondrion, nucleus, plastid	35.08	16.51
HORVU4Hr1G074230.3	Barley	nucleus, plastid	36.17	16.18
HORVU5Hr1G085320.1	Barley	plastid	34.2	16.1
Os03t0165266-00	Rice	nucleus	37.25	15.92
TraesCS2A01G182200.1	Wheat	plastid	35.95	15.88
GSMUA_Achr6P04530_001	Banana	nucleus	29.19	15.11
Bra015035.1-P	Field mustard	nucleus	19.39	8.54
Bra001944.1-P	Field mustard	nucleus	19.39	8.35
Bra002302.1-P	Field mustard	cytosol	19.61	7.22
Bra021058.1-P	Field mustard	nucleus	19.39	7.0
Bra022395.1-P	Field mustard	nucleus	11.55	5.81
Bra015430.1-P	Field mustard	nucleus	18.95	5.5
Bra024250.1-P	Field mustard	cytosol	11.76	4.68
Bra024192.1-P	Field mustard	nucleus	8.93	3.53
Bra018612.1-P	Field mustard	nucleus	15.25	2.7
Bra032544.1-P	Field mustard	nucleus	9.59	2.68
Bra007061.1-P	Field mustard	mitochondrion	10.24	2.29
Bra031634.1-P	Field mustard	nucleus	2.18	1.72
HORVU2Hr1G024970.1	Barley	nucleus	1.09	1.53

Protein Annotations

Gene3D:3.40.50.10810	MapMan:35.1	EnsemblPlantsGene:Bra000888	EnsemblPlants:Bra000888.1	EnsemblPlants:Bra000888.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:IPR038718
UniProt:M4C9K9	InterPro:P-loop_NTPase	PFAM:PF00176	PFscan:PS51192	PANTHER:PTHR10799	PANTHER:PTHR10799:SF807
SMART:SM00487	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI0002540606	SEG:seg

Description

AT2G21450 (E=1e-118) CHR34 | CHR34 (chromatin remodeling 34); ATP binding / DNA binding / helicase/ nucleic acid binding

Coordinates

chrA03:-:13718920..13720874

Molecular Weight (calculated)

52926.1 Da

IEP (calculated)

5.548

GRAVY (calculated)

-0.418

Length

459 amino acids

Sequence
(BLAST)

001: MESRRGSGRS LVSEVVSTFV YKAWILMSES KRISQSELAK RPGPFFLLDL LDWFEESKYG WLADDVKRLC ELKRKLLNGS VSVGLPQESV TLCIFYVVKT
101: EDCSGSDASP ERYNEEDSSS KTPTDDDNET HLNGVDEEEE ENSGGKWLLL KNHLKLVTVE NVQDNDPKQT EDCEHSFIYK DDVGEVCRVC GLIKTPIENI
201: IEVVYYKPKR SRRAYTREQE EETETTRMDF TETHSSSHTN NILGDKMFIH PRHDYEMRPH HIVGFKFLCN NLTSEDPGGC ILAHAPGSGK TFLLFSFLQS
301: FMAMDPQAKP LIVLPKGIIE SWKREFTKWA VENIPLYSVK AESRRQQLKV LREWVEERSI LFLGYQQFAK IICDVSINID DEVSEDCKRI LLEKPTLLIL
401: DEGHTSRNKE TNMLISLARV RTPRKVVLTG TFVFIMADWY TLTLNNRFTL FTLNSFVRL

Best Arabidopsis Sequence Match ( AT2G21450.1 )
(BLAST)

001: MFTAWNLRSR SRSITQEELA KRPDPFCLPN LLDGLEDGLY GRLADDVKRL CKLRQEYLNG SISLEDIEAR QDNKRAKSSH NLIIDSDDEL PQESVTQINP
101: LEKRLKKLKE VIVVKNGDSS GSDSSPQGYD EEDSSRNSTD IDNQSLYVDA EEEEELWRKM AFAQESIKVT VEDSQSNDHK QIEDCDHSFI CKDDIGEVCR
201: VCGLIKKPIE SMIEVVFNKQ KRSRRTYMRE KENGETSRDF SGIQSSHTNI LGEKMFIHPW HDQEMRPHQT EGFRFLCNNL AADEPGGCIL AHAPGSGKTF
301: LLISFLQSFM AMDPQARPLV VLPKGIIESW KREFTLWEVE KIPLLDFYSV KAESRKQQLK VLGQWIKERS ILFLGYQQFT RIICDDNFEA ASEDCKLILL
401: EKPTLLILDE GHTSRNKETY MLSSLARVKT RRKVVLTGTL FQNNVEEVFN ILDLVRPKFL KRPGTREIVS RIMSKAEIPR GKQVNQSSSS IEGTFFAAVE
501: LTLQRSTNFS AKASLIKDLR EMTRNILHYH KADFSGLLPG LSEFTVMLNL SSIQRDEVKG LRKMELFKQI SLGAALYIHP KLKSFLEENP SNGEKGFSDN
601: NTTVMKLDKM LKKINVRDGV KMKFFLNLLA LCESTGEKLL VFSQYIVPIK TLERLMSSMK GWRLGKEMFT ITGDSSNEQR EWSMERFNNS LEAKVFFGSI
701: KACGEGISLV GASRVLILDV HLNPSVTQQA VARAYRPGQK RKVYAYKLVA ADSPEEENYE TCTRKEMMSK MWFEWNVGSG REDFGFRAID ADHSGDAFLE
801: TTKMKEDIKC LYTKVN

Arabidopsis Description

CHR34chromatin remodeling 34 [Source:TAIR;Acc:AT2G21450]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.