Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73492 | Canola | mitochondrion | 99.22 | 97.65 |
| AT3G54280.2 | Thale cress | mitochondrion | 91.5 | 88.02 |
| PGSC0003DMT400076122 | Potato | cytosol, nucleus, plastid | 28.22 | 79.61 |
| KXG34530 | Sorghum | endoplasmic reticulum, golgi, plasma membrane | 6.35 | 74.29 |
| Solyc08g074500.2.1 | Tomato | cytosol, nucleus, plastid | 44.73 | 72.24 |
| VIT_15s0024g00350.t01 | Wine grape | mitochondrion | 68.51 | 69.39 |
| KRH23760 | Soybean | mitochondrion | 68.75 | 68.78 |
| KRH40039 | Soybean | mitochondrion | 68.16 | 68.2 |
| GSMUA_Achr4P27500_001 | Banana | mitochondrion | 63.33 | 63.21 |
| Zm00001d039160_P031 | Maize | cytosol, mitochondrion, nucleus, plasma membrane | 61.23 | 61.35 |
| KXG22701 | Sorghum | mitochondrion | 61.33 | 61.33 |
| HORVU1Hr1G094870.2 | Barley | mitochondrion | 61.28 | 60.66 |
| TraesCS1B01G476500.1 | Wheat | mitochondrion | 61.23 | 60.61 |
| TraesCS1A01G442400.2 | Wheat | mitochondrion | 61.23 | 60.61 |
| TraesCS1D01G450200.1 | Wheat | mitochondrion | 61.18 | 60.56 |
| Bra022395.1-P | Field mustard | nucleus | 8.94 | 20.04 |
| Bra024192.1-P | Field mustard | nucleus | 10.74 | 18.95 |
| Bra024250.1-P | Field mustard | cytosol | 10.6 | 18.82 |
| Bra021841.1-P | Field mustard | cytosol | 5.22 | 14.01 |
| Bra015035.1-P | Field mustard | nucleus | 6.64 | 13.05 |
| Bra001944.1-P | Field mustard | nucleus | 6.4 | 12.29 |
| Bra002302.1-P | Field mustard | cytosol | 7.18 | 11.8 |
| Bra032544.1-P | Field mustard | nucleus | 8.89 | 11.08 |
| Bra021058.1-P | Field mustard | nucleus | 6.79 | 10.94 |
| Bra000888.1-P | Field mustard | cytosol | 2.29 | 10.24 |
| Bra015430.1-P | Field mustard | nucleus | 7.42 | 9.6 |
| Bra018612.1-P | Field mustard | nucleus | 10.89 | 8.61 |
| Bra031634.1-P | Field mustard | nucleus | 2.2 | 7.75 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:12.4.1.4.2 | MapMan:15.3.5.7.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | InterPro:ARM-like |
| InterPro:ARM-type_fold | EnsemblPlantsGene:Bra007061 | EnsemblPlants:Bra007061.1 | EnsemblPlants:Bra007061.1-P | ncoils:Coil | InterPro:DUF3535 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR011989 | InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M4CS69 | InterPro:P-loop_NTPase |
| PFAM:PF00176 | PFAM:PF00271 | PFAM:PF12054 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR36498 |
| SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF48371 | SUPFAM:SSF52540 |
| UniParc:UPI00025428AE | SEG:seg | : | : | : | : |
Description
AT3G54280 (E=0.0) CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | RGD3 (ROOT GROWTH DEFECTIVE 3); ATP binding / DNA binding / binding / helicase/ nucleic acid binding
Coordinates
chrA09:+:27099232..27110864
Molecular Weight (calculated)
227299.0 Da
IEP (calculated)
5.935
GRAVY (calculated)
-0.170
Length
2048 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAQQQQSSRL SRLLTLLDTG STQTTRLTAA RQIGDIAKSH PQDLSSLLRK VLHYLRSKKW DTRVAAAHAI GAIVLNVKHT SLSELLNSLA TKLGEAGLSG
0101: NVDEVVASGN LQSKLLENAP FRSFEMNKVL EFGALLASGG QEYDILNDNS KNPRDRMARQ KKNLRRRLGL DMCEQFMDVN EMIGDEDLIE QKSNVHANGV
0201: GNRLYANYSP HHIQQFVSRM VPRVAHKRPS ARELNLLKRK AKISSKDQAK GNCEGADVEM SSSHASTSKR TLSDSMDSNK ANIGNEDDME PDADGRWPFH
0301: SFVEQLILDM FDPAWEIRHG SVMALREILM LHGGSAGVST AEFSSDNGFD LNEDLTKVTR EKEIDLNMQF SVNELEPLRK RPKIEDPSKS FVGNTVLEPM
0401: VSDYENSVKD EEVESLLPPV KVNGQVNFIS TKAEPESSID GSSCQSDRNH VAEVSNHVED KSFVEKSLLP NKNQEENIEV LDLVKQARHS WIKNFEFLQD
0501: CTIRFLCVLS LDRFGDYISD QVVAPVREAC AQALGATFKY MSPSLIYETL NILLQMQRRP EWEIRHGSLL GIKYLVAVRQ EMLQDLLGHI LPACKAGLED
0601: SDDDVRAVAA DALIPAAAAI VSLRGQTLLS IVMLLWDILL ELDDLSPSTS SVMNLLAEIY SQDDMTVVMH EELSVGEGQK VDLNETVHVE SVRERRDVRE
0701: SPYALSGLAP RLWPFTRHDI TSVRFSAIRT LERLLEAGCR KNISEQSKSS FWPSSILGDT LRIVFQNLLL ESTEEILECS ERVWKLLVQC PVEDLEEAAK
0801: SYMASWIELA ATPYGSTLDA TKMFWPVAPP RMSHFKAAAK MKAVQLENEA SSTLGFDYAR SFASLGKNED ASARSTKIIV GSDMEMSVTR TRVVTASALG
0901: ILASRLSDRS MQFVVDPLSS TLTSLSGVQR QVASVVLISW FREIKCKVPS PSDGSGSLPG FPTPLKKWML DLLACSDPAF PTKDILLPYA ELSRTYTKMR
1001: NEASQLLHTV ETYHCFDKLL STTKLNADSL SADETIEFAS TLALWNKDSA EKESLEKQVF EDVESSRQQL LSTAGYLKCV QNNLHITVTS LIAAAVVWMS
1101: EFPSRLNPII LPLMASIKRE QEQILQQKAA EALAELIAYC VDRKPSPNDK LIKNICSLTC MDPSETPQAS IIRSIDIVDD LDFLSSRSNA GKQKSKAVLA
1201: GGEDRSKVEG FITRRGAELA LKHLSVKFGG SLFDKLPKLW ECLTEVLVPV TPEDQQDFDL KMESVSDPQV LINNIQVVRS VAPVMEETLK PRLLSLLPCI
1301: FKCVRHSHVA VRLAASRCVM TMAKSMTTNV MAAVVENAIP MLGDLTCVNA RQGAGMLIGL LVQGLGVELV PYSPLLVVPL LRCMSDVDSS VRQSVTRSFA
1401: ALVPMLPLAR GVPPPVGLSQ DLSSNAEDAK FLEQLLDNSH IDDYKLCTEL KVTLRRYQQE GINWLGFLKR FKLHGILCDD MGLGKTLQAS AIVASDAAER
1501: RGLTDEPDVF PSIIVCPSTL VGHWAFEIEK YIDLSLLSVL QYVGSAQDRV SLRELFKNHN VIITSYDVVR KDADYLTQFS WNYCILDEGH IIKNAKSKIT
1601: SAVKQLKAQH RLILSGTPIQ NNIIELWSLF DFLMPGFLGT ERQFQASYGK PLLAARDPKC SAKDAEAGVL AMEALHKQVM PFLLRRTKEE VLSDLPEKII
1701: QDRYCDLSPV QLKLYEQFSG SHAKQEISTI IKVDGSADSS NVEVAPTKAS THVFQALQYL LKLCSHPLLV LGEKVTEPVA SDLAAMINGC SDIITELHKV
1801: QHSPKLVALQ EILEECGIGS EASSSDGTLS VGQHRVLIFA QHKALLDIIE KDLFQAHMKS VTYMRLDGSV VPEKRFEIVK AFNSDPTIDV LLLTTHVGGL
1901: GLNLTSADTI VFMEHDWNPM RDHQAMDRAH RLGQKRVVNV HRLIMRGTLE EKVMSLQRFK VSVANTVINA ENASMKTMNT DQLLDLFASA ETSKKGGASS
2001: KKGSEDNDQT AGTGKGIKAI LGNLEELWDQ SQYTEEYNLN QFLAKLNG
0101: NVDEVVASGN LQSKLLENAP FRSFEMNKVL EFGALLASGG QEYDILNDNS KNPRDRMARQ KKNLRRRLGL DMCEQFMDVN EMIGDEDLIE QKSNVHANGV
0201: GNRLYANYSP HHIQQFVSRM VPRVAHKRPS ARELNLLKRK AKISSKDQAK GNCEGADVEM SSSHASTSKR TLSDSMDSNK ANIGNEDDME PDADGRWPFH
0301: SFVEQLILDM FDPAWEIRHG SVMALREILM LHGGSAGVST AEFSSDNGFD LNEDLTKVTR EKEIDLNMQF SVNELEPLRK RPKIEDPSKS FVGNTVLEPM
0401: VSDYENSVKD EEVESLLPPV KVNGQVNFIS TKAEPESSID GSSCQSDRNH VAEVSNHVED KSFVEKSLLP NKNQEENIEV LDLVKQARHS WIKNFEFLQD
0501: CTIRFLCVLS LDRFGDYISD QVVAPVREAC AQALGATFKY MSPSLIYETL NILLQMQRRP EWEIRHGSLL GIKYLVAVRQ EMLQDLLGHI LPACKAGLED
0601: SDDDVRAVAA DALIPAAAAI VSLRGQTLLS IVMLLWDILL ELDDLSPSTS SVMNLLAEIY SQDDMTVVMH EELSVGEGQK VDLNETVHVE SVRERRDVRE
0701: SPYALSGLAP RLWPFTRHDI TSVRFSAIRT LERLLEAGCR KNISEQSKSS FWPSSILGDT LRIVFQNLLL ESTEEILECS ERVWKLLVQC PVEDLEEAAK
0801: SYMASWIELA ATPYGSTLDA TKMFWPVAPP RMSHFKAAAK MKAVQLENEA SSTLGFDYAR SFASLGKNED ASARSTKIIV GSDMEMSVTR TRVVTASALG
0901: ILASRLSDRS MQFVVDPLSS TLTSLSGVQR QVASVVLISW FREIKCKVPS PSDGSGSLPG FPTPLKKWML DLLACSDPAF PTKDILLPYA ELSRTYTKMR
1001: NEASQLLHTV ETYHCFDKLL STTKLNADSL SADETIEFAS TLALWNKDSA EKESLEKQVF EDVESSRQQL LSTAGYLKCV QNNLHITVTS LIAAAVVWMS
1101: EFPSRLNPII LPLMASIKRE QEQILQQKAA EALAELIAYC VDRKPSPNDK LIKNICSLTC MDPSETPQAS IIRSIDIVDD LDFLSSRSNA GKQKSKAVLA
1201: GGEDRSKVEG FITRRGAELA LKHLSVKFGG SLFDKLPKLW ECLTEVLVPV TPEDQQDFDL KMESVSDPQV LINNIQVVRS VAPVMEETLK PRLLSLLPCI
1301: FKCVRHSHVA VRLAASRCVM TMAKSMTTNV MAAVVENAIP MLGDLTCVNA RQGAGMLIGL LVQGLGVELV PYSPLLVVPL LRCMSDVDSS VRQSVTRSFA
1401: ALVPMLPLAR GVPPPVGLSQ DLSSNAEDAK FLEQLLDNSH IDDYKLCTEL KVTLRRYQQE GINWLGFLKR FKLHGILCDD MGLGKTLQAS AIVASDAAER
1501: RGLTDEPDVF PSIIVCPSTL VGHWAFEIEK YIDLSLLSVL QYVGSAQDRV SLRELFKNHN VIITSYDVVR KDADYLTQFS WNYCILDEGH IIKNAKSKIT
1601: SAVKQLKAQH RLILSGTPIQ NNIIELWSLF DFLMPGFLGT ERQFQASYGK PLLAARDPKC SAKDAEAGVL AMEALHKQVM PFLLRRTKEE VLSDLPEKII
1701: QDRYCDLSPV QLKLYEQFSG SHAKQEISTI IKVDGSADSS NVEVAPTKAS THVFQALQYL LKLCSHPLLV LGEKVTEPVA SDLAAMINGC SDIITELHKV
1801: QHSPKLVALQ EILEECGIGS EASSSDGTLS VGQHRVLIFA QHKALLDIIE KDLFQAHMKS VTYMRLDGSV VPEKRFEIVK AFNSDPTIDV LLLTTHVGGL
1901: GLNLTSADTI VFMEHDWNPM RDHQAMDRAH RLGQKRVVNV HRLIMRGTLE EKVMSLQRFK VSVANTVINA ENASMKTMNT DQLLDLFASA ETSKKGGASS
2001: KKGSEDNDQT AGTGKGIKAI LGNLEELWDQ SQYTEEYNLN QFLAKLNG
0001: MAQQQSSRLN RLLTLLDTGS TQATRLTAAK QIGDIAKSHP QDLSSLLRKV LHHLRSKKWD TRVAAAHAIG AIVLNVKHPS LSELLNSLAT KLGEAGISDN
0101: VDEVVAFRNL QSKILANAPF RSFEMNKVLE FGALLASGGQ EYDILNDNSK NPRDRVARQK KNLRRRLGLD MCEQFMDVNE MIRDEDLIEQ KSNVPANGVG
0201: NRLYANCSPH HIQQFVSRMV PRVNSRRPSA RELNLLKRKA KISSKDQAKG SCEVADVEMS SSHVASTSKR ILSDSLDSSK ADIGNEDDIE PDGDGKWPFH
0301: SFVEQLILDM FDPAWEIRHG SVMALREILM LHGGSAGVST EEFSSDNGFE LKDVLNKVTR EREIDLNMQV SENELEPLRK RPKIEDPSKS FIDNTVLEVI
0401: GGDYDINVKD EDAEFLLPPV KVNGQTDCSS TKLEPQSSMD DSTSHSEINH VAEVNNHFED KSFIEEPVIP KQQEENLEVL DLVKQARHSW IKNFEFLQDC
0501: TIRFLCVLSL DRFGDYISDQ VVAPVREACA QALGATFKYM NPSLIYETLN ILLQMQRRPE WEIRHGSLLG IKYLVAVRQE MLQDLLGYIL PACKAGLEDS
0601: DDDVRAVAAD ALIPAAAAIV SLRGQTLLSI VMLLWDILLE LDDLSPSTSS IMNLLAEIYS QDDMTLVMHE ELSLGEEQNI ELNEMGHIES IGERRDVKES
0701: PYALSGLAPR LWPFTRHDIT SVRFSAIRTL ERLLEAGCRK NISGQSKSSF WPSSILGDTL RIVFQNLLLE STEEILECSE RVWRLLVQCP VDDLEDTAKF
0801: YMASWIELAA TPYGSTLDAT KMFWPVAPPR KSHFKAAAKM KAVKLENEAS SILGFDYARS SASLEKQEDA SARSTKIIVG SDMEMSVTRT RVVTASALGI
0901: FASRLREGSM QFVVDPLSST LTSMSGVQRQ VGSIVLISWF RETKCKAPSD GSGSLPGFPS PLKKWLLDLL ACADPAFPTK DIFLPYAELS RTYTKMRNEA
1001: SQLLHTVETC HCFDKLLSTN KLNVESVTAD ETIDFASTLD LWNKESAGNE SLEKQVFEDV ESSRQQLLST AGYLKCVQSN LHITVTSLVA AAVVWMSEFP
1101: ARLNPIILPL MASIKREQEQ ILQQIAAEAL AELIAYCVDR KPSPNDKLIK NICSLTCMDP SETPQASIIS SMDIVDDMDF LSSRSNTGKQ KAKVVLASGE
1201: DRSKVEGFIT RRGSELALKH LSLKFGGSLF DKLPKLWECL TEVLVPEIPS DQQKIDLKIE SISDPQVLIN NIQVVRSIAP VMEETLKPRL LSLLPCIFKC
1301: VRHSHVAVRL AASRCVMTMA KSMTTDVMAA VVESAIPMLG DLTCISGRQG AGMLIGLLVQ GLGVELVPYS PLLVVPLLRC MSDVDSSVRQ SVTRSFAALV
1401: PMLPLARGVP PPVGLSKDLS SNAEDAKFLE QLLDNSHIDD YKLCTELKVQ LRRYQQEGIN WLGFLKRFKL HGILCDDMGL GKTLQASAIV ASDAAERRGS
1501: TDELDVFPSI IVCPSTLVGH WAFEIEKYID LSLLSVLQYV GSAQDRVSLR EQFNNHNVII TSYDVVRKDV DYLTQFSWNY CILDEGHIIK NAKSKITAAV
1601: KQLKAQHRLI LSGTPIQNNI MELWSLFDFL MPGFLGTERQ FQASYGKPLL AARDPKCSAK DAEAGVLAME ALHKQVMPFL LRRTKEEVLS DLPEKIIQDR
1701: YCDLSPVQLK LYEQFSGSSA KQEISSIIKV DGSADSGNAD VAPTKASTHV FQALQYLLKL CSHPLLVLGD KVTEPVASDL AAMINGCSDI ITELHKVQHS
1801: PKLVALQEIL EECGIGSDAS SSDGTLSVGQ HRVLIFAQHK ALLDIIEKDL FQAHMKSVTY MRLDGSVVPE KRFEIVKAFN SDPTIDVLLL TTHVGGLGLN
1901: LTSADTLVFM EHDWNPMRDH QAMDRAHRLG QKRVVNVHRL IMRGTLEEKV MSLQKFKVSV ANTVINAENA SMKTMNTDQL LDLFASAETS KKGGGSSKKG
2001: SEDNDQIAGT GKGMKAILGN LEELWDQSQY TEEYNLSQFL TKLNG
0101: VDEVVAFRNL QSKILANAPF RSFEMNKVLE FGALLASGGQ EYDILNDNSK NPRDRVARQK KNLRRRLGLD MCEQFMDVNE MIRDEDLIEQ KSNVPANGVG
0201: NRLYANCSPH HIQQFVSRMV PRVNSRRPSA RELNLLKRKA KISSKDQAKG SCEVADVEMS SSHVASTSKR ILSDSLDSSK ADIGNEDDIE PDGDGKWPFH
0301: SFVEQLILDM FDPAWEIRHG SVMALREILM LHGGSAGVST EEFSSDNGFE LKDVLNKVTR EREIDLNMQV SENELEPLRK RPKIEDPSKS FIDNTVLEVI
0401: GGDYDINVKD EDAEFLLPPV KVNGQTDCSS TKLEPQSSMD DSTSHSEINH VAEVNNHFED KSFIEEPVIP KQQEENLEVL DLVKQARHSW IKNFEFLQDC
0501: TIRFLCVLSL DRFGDYISDQ VVAPVREACA QALGATFKYM NPSLIYETLN ILLQMQRRPE WEIRHGSLLG IKYLVAVRQE MLQDLLGYIL PACKAGLEDS
0601: DDDVRAVAAD ALIPAAAAIV SLRGQTLLSI VMLLWDILLE LDDLSPSTSS IMNLLAEIYS QDDMTLVMHE ELSLGEEQNI ELNEMGHIES IGERRDVKES
0701: PYALSGLAPR LWPFTRHDIT SVRFSAIRTL ERLLEAGCRK NISGQSKSSF WPSSILGDTL RIVFQNLLLE STEEILECSE RVWRLLVQCP VDDLEDTAKF
0801: YMASWIELAA TPYGSTLDAT KMFWPVAPPR KSHFKAAAKM KAVKLENEAS SILGFDYARS SASLEKQEDA SARSTKIIVG SDMEMSVTRT RVVTASALGI
0901: FASRLREGSM QFVVDPLSST LTSMSGVQRQ VGSIVLISWF RETKCKAPSD GSGSLPGFPS PLKKWLLDLL ACADPAFPTK DIFLPYAELS RTYTKMRNEA
1001: SQLLHTVETC HCFDKLLSTN KLNVESVTAD ETIDFASTLD LWNKESAGNE SLEKQVFEDV ESSRQQLLST AGYLKCVQSN LHITVTSLVA AAVVWMSEFP
1101: ARLNPIILPL MASIKREQEQ ILQQIAAEAL AELIAYCVDR KPSPNDKLIK NICSLTCMDP SETPQASIIS SMDIVDDMDF LSSRSNTGKQ KAKVVLASGE
1201: DRSKVEGFIT RRGSELALKH LSLKFGGSLF DKLPKLWECL TEVLVPEIPS DQQKIDLKIE SISDPQVLIN NIQVVRSIAP VMEETLKPRL LSLLPCIFKC
1301: VRHSHVAVRL AASRCVMTMA KSMTTDVMAA VVESAIPMLG DLTCISGRQG AGMLIGLLVQ GLGVELVPYS PLLVVPLLRC MSDVDSSVRQ SVTRSFAALV
1401: PMLPLARGVP PPVGLSKDLS SNAEDAKFLE QLLDNSHIDD YKLCTELKVQ LRRYQQEGIN WLGFLKRFKL HGILCDDMGL GKTLQASAIV ASDAAERRGS
1501: TDELDVFPSI IVCPSTLVGH WAFEIEKYID LSLLSVLQYV GSAQDRVSLR EQFNNHNVII TSYDVVRKDV DYLTQFSWNY CILDEGHIIK NAKSKITAAV
1601: KQLKAQHRLI LSGTPIQNNI MELWSLFDFL MPGFLGTERQ FQASYGKPLL AARDPKCSAK DAEAGVLAME ALHKQVMPFL LRRTKEEVLS DLPEKIIQDR
1701: YCDLSPVQLK LYEQFSGSSA KQEISSIIKV DGSADSGNAD VAPTKASTHV FQALQYLLKL CSHPLLVLGD KVTEPVASDL AAMINGCSDI ITELHKVQHS
1801: PKLVALQEIL EECGIGSDAS SSDGTLSVGQ HRVLIFAQHK ALLDIIEKDL FQAHMKSVTY MRLDGSVVPE KRFEIVKAFN SDPTIDVLLL TTHVGGLGLN
1901: LTSADTLVFM EHDWNPMRDH QAMDRAHRLG QKRVVNVHRL IMRGTLEEKV MSLQKFKVSV ANTVINAENA SMKTMNTDQL LDLFASAETS KKGGGSSKKG
2001: SEDNDQIAGT GKGMKAILGN LEELWDQSQY TEEYNLSQFL TKLNG
Arabidopsis Description
RGD3ROOT GROWTH DEFECTIVE 3 [Source:UniProtKB/TrEMBL;Acc:F4JCU6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.