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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX93550 Canola nucleus 56.54 98.12
AT1G08600.3 Thale cress nucleus 48.13 84.31
Bra031634.1-P Field mustard nucleus 14.94 66.61
VIT_14s0036g01460.t01 Wine grape nucleus 34.97 61.34
KRH34128 Soybean nucleus 26.01 59.7
KRG92726 Soybean nucleus 34.0 59.33
Solyc04g050150.2.1 Tomato nucleus 26.94 57.35
GSMUA_Achr4P25080_001 Banana nucleus 24.74 56.83
Solyc04g050160.2.1 Tomato nucleus 6.52 53.65
GSMUA_Achr4P25070_001 Banana golgi 5.06 51.78
KXG38419 Sorghum nucleus 28.98 50.64
Zm00001d032801_P005 Maize nucleus 28.79 50.27
TraesCS1D01G143000.1 Wheat nucleus 28.75 49.9
HORVU1Hr1G038370.1 Barley nucleus 28.6 49.8
TraesCS1A01G144000.3 Wheat nucleus 28.75 49.7
TraesCS1B01G161400.5 Wheat nucleus 29.1 47.51
Bra022395.1-P Field mustard nucleus 7.99 22.67
Bra021841.1-P Field mustard cytosol 6.1 20.68
Os07t0692600-01 Rice mitochondrion 3.67 20.0
Bra024192.1-P Field mustard nucleus 8.49 18.95
Bra024250.1-P Field mustard cytosol 7.22 16.22
Bra000888.1-P Field mustard cytosol 2.7 15.25
Bra001944.1-P Field mustard nucleus 6.06 14.73
Bra015035.1-P Field mustard nucleus 5.91 14.68
Bra021058.1-P Field mustard nucleus 6.29 12.82
Bra002302.1-P Field mustard cytosol 5.94 12.36
Bra032544.1-P Field mustard nucleus 7.18 11.32
Bra007061.1-P Field mustard mitochondrion 8.61 10.89
Bra015430.1-P Field mustard nucleus 6.41 10.49
Os02t0161200-01 Rice nucleus 1.16 7.04
KRH77275 Soybean cytosol 0.19 5.43
KRH28211 Soybean mitochondrion 0.19 5.43
Os07t0692500-01 Rice cytosol 0.73 3.34
Os07t0692401-00 Rice mitochondrion 0.15 0.83
Protein Annotations
MapMan:12.3.3.9.4MapMan:12.4.1.3.2MapMan:15.5.29Gene3D:3.30.160.360Gene3D:3.40.50.10810InterPro:ADD
EnsemblPlantsGene:Bra018612EnsemblPlants:Bra018612.1EnsemblPlants:Bra018612.1-Pncoils:CoilInterPro:FYrich_CInterPro:FYrich_N
GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR003347
InterPro:IPR003349InterPro:IPR003888InterPro:IPR003889InterPro:IPR014001InterPro:IPR025766InterPro:IPR038718
InterPro:JmjC_domInterPro:JmjNUniProt:M4DQ21InterPro:P-loop_NTPasePFAM:PF00176PFAM:PF00271
PFAM:PF02373PFAM:PF02375PFAM:PF02928PFAM:PF05964PFAM:PF05965PFscan:PS51183
PFscan:PS51184PFscan:PS51192PFscan:PS51194PFscan:PS51533PFscan:PS51542PFscan:PS51543
PANTHER:PTHR10694PANTHER:PTHR10694:SF53SMART:SM00487SMART:SM00490SMART:SM00541SMART:SM00542
SMART:SM00545SMART:SM00558InterPro:SNF2-like_sfInterPro:SNF2_NSUPFAM:SSF51197SUPFAM:SSF52540
UniParc:UPI000253E79DInterPro:Znf_C5HC2SEG:seg:::
Description
AT1G08600 (E=0.0) ATRX, CHR20 | ATRX; ATP binding / DNA binding / helicase/ nucleic acid binding
Coordinates
chrA06:+:2967075..2982615
Molecular Weight (calculated)
293102.0 Da
IEP (calculated)
6.258
GRAVY (calculated)
-0.595
Length
2591 amino acids
Sequence
(BLAST)
0001: MDGREDTVEG KEEDRMEVEI EKVEAREEEQ NDEVMMEENN NQDEQKDDEE MQDTDLRSES SVSNSDEEEG LRSGNDDELD LEKPLSEEEV DELISDLLGV
0101: ESKAAEAQEA LEKESLSKVE SEVREELAQT LDGDELDKAV EAEMITFKDE WEATLDELEI ESANLLEQLD GAGIELPKLY EMIESQAPNG CYTEAWKKRA
0201: HWVGTQVTKE TGESLANAES FLLTHRPVRK RHGKLLEEGA SGFLEKKFAD DAVKECLTGT SELDWPSLNK VFSEKRDEAI SFGSKHWASV YLASTPQQAA
0301: AMGLEFPGVN EVEEIEEIDE SLADPFFADA IENERELALT EEQKKNYIRV KEEDDINIDR ELQLRLKRKR RMKRSKQVLR HTAEDRDDDS AYLYGNSIAP
0401: DPAKDQVKCP ENSTEFQNNE VNKEANGNLS NSDADKMVPV ADLNVDTMRD DSQNPASNFR CTACNNVTVE VHSHPLLEVI VCMDCKRLIE DRVAKVDASL
0501: ERHCEWCGHI ADLINCRSCE KLFCASCIKR NIGEEYLSEA QSSGWDCCCC APIPLRRLTL ELEKAMGDKK SMESSSDSSS DSSSDSSSDN NSVDTDADVN
0601: VAVSSKKKSK KKIRRIIDDA ELGKDTRSKI AIEKKRQERL RSLQFSARYK TISSMGDVKI PEGAEAEVLG DAHSGYIVNV AREIGEEAVR VPRSISAKLK
0701: PHQVTGIRFM WENIIQSINS VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK SALIVTPVNV LHNWRSEFTK WMPSEVKPLR IFMLEDVSRE
0801: RRLDLLRKWR NKGGVFLMGY AAFRNLSLGR GVKDINAAKE FCSALRDGPD ILVCDEAHII KNTRADTTQA LKQVKCQRRI ALTGSPLQNN LMEYYCMVDF
0901: VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEELKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR KLYKRFLKLY GFNDGRADER
1001: MRKNFFAAYQ VLAQILNHPG IPQLRSEDKK QGRRGSIVDI PDDCSSDENL DCNMVAGEKQ RNMSDLQDKV DGYLQKDWWV DLLQKNNYKV SEYSGKMILL
1101: LDILSMCAHV GDKALVFSQS IPTLDLIELY LSRVARHGKH GKCWKKGKDW YRIDGKTESS ERQKLVDKFN EPENKRVKCT LISTRAGSLG INLYAANRVI
1201: IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVNKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD DEKSDAVTEI SKRKEAATSS
1301: RGCDSDKLME NLLQRHSPDW ISSFHEHETL LQENEDERLT KEEKDMAWEV YRKALQWEEV QRTPVNEAPV LQKPSPSPQI QPLRHPRGFN RSRFVNRSCT
1401: RIAHELTLIS QRRKVGSSTI CGECGCVITW EDVLPAPKLS EIRIYNSRHV CLIPFPLLLP LKLMSSKRTK ADDHVLEYVY VMGTELMRVC MKEESDELPS
1501: VPPGFESYAT FTLKRPLPSA AAADKTMESS VTEQANKMEE IESDELKAAR SLRRRPWINY DNASPQNLDQ KKPSLPKGVT RGCADCNDCQ KVTARWHPDE
1601: ARRPDLEDAP IFYPTEEEFE DTLSYISKIR PKAEKYGICR IVPPPSWKPP CPLKEKQLWE GSKFTTRVQR VDKLQNRSSM KKILSNQMRR KKRKCMKTGV
1701: DAVTNGNAST ETSGFETFGF EPGPGFTLND FKKYADEFKA QYFKKSETSS VGNSWEPGVE DVEGEYWRIV DKATEEIEVL YGADLETGVF GSGFPKISSS
1801: SSDEKYAKSG WNLNNFSRLP GSLLKHEGSD ISGVLVPWLY IGMCFSSFCW HVEDHHLYSL NYMHWGAPKL WYGVSGKDAV KLEEAMRKHL PDLFEEQPDL
1901: LHKLVTQLSP SKLKTAGVPV HRCVQHAGEF VLTFPRAYHA GFNCGFNCAE AVNVAPGDWL PHGQIAIELY CQQGRKTSIS HDKLLLGAAR EVVKADWELN
2001: LLKKNTIDNL RWKQFSGKDG VLAKTLKARI DIERTRREFL CSSSLALKMH SNFDATNERE CCICFFDLHL SAAGCRCSPE KYTCLTHVNQ LCSCPWVSRY
2101: FLFRYDIDEL NVLVEAVEGK LSAVYRWARQ DLGLALSAHV SERKMEMDEE GKVHKDLSPQ ADVSLLVKDK EEQLSPSQFM KPVKEETVSV PKDSVCQQPS
2201: EGGMMVSVAA AAKPTSGKKN SRGSVSSGKH LRIIRERPTH VLALEAIGKQ VTSLPDTRNT ISSLPTNDQR EMGGDVPSSV SHTEVNAVAD DDICNRVNIS
2301: NQPSSSKSKT SGGLAILDVV DGTRRSKSST PSCSQNNNGT ARSNSGTPTC SQNNSPDRII RQKGPRIAKV VRRVKCKVEP LSYGCVLSGK SWCNRQAIFP
2401: KGFRSRVRYI NILDPTNMSF YVSEILDAGR NSPLFMVYLE GNPSEVFAHL SPTRCWEMVR DRVNQEISKQ HKAGRLDLPP LQPSGSPDGF EMFGYTSPAI
2501: IQAIEALDVN RVCTEYWDSR PYSRPQVQFP ANPLPRESPR QGLLPAGTNS TLKVLLKKAN MEELSSLQQV LSESNIDLVT ELVKEEIQNR R
Best Arabidopsis Sequence Match ( AT1G08600.4 )
(BLAST)
0001: MEANEESLKG KIEKLEGKEV IVESKEDEMD IIIEENREAE QEVMEVKARD GRGEQNDVLM EENNNQGEQK DEEMQDASSR SESSDFNSDE DEQILSRRDD
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRE RRFDLLTKWR KKGGVFLMGY TNFRNLSLGR GVKDLNAARG ICNALRDGPD ILVCDEAHII KNTKADTTQA LKQVKCQRRI
0901: ALTGSPLQNN LMEYYCMVDF VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEQLKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR
1001: ILYQRFLELY GFSDGRTDER MRKNFFAAYQ VLAQILNHPG IPQLRSEDSK NGRRGSIVDI PDDCSSDENI DYNMVTGEKQ RTMNDLQDKV DGYLQKDWWV
1101: DLLQKNNYKV SDFSGKMILL LDILSMSADV GDKALVFSQS IPTLDLIELY LSRVPRHGKQ GKFWKKGKDW YRIDGKTESS ERQKLVDRFN EPDNKRVKCT
1201: LISTRAGSLG INLYAANRVI IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVTKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD
1301: DEKSEAVTEI SKQNEAGHSN LVEQAILWTK KATLSRVGGD KLMENLLQRH GPNWISSFHE HETLLQENEE ERLTKEEKDM AWEVYRRALE WEEVQRVPFS
1401: ESPVVPKPSP STQTEPLPQP KGFNRSRFVN RNCTRIAHQL TLISQGLKVG SSTVCGECGR VIRWEDVIPA SKLSAVIVN
Arabidopsis Description
ATRXCHR20 [Source:UniProtKB/TrEMBL;Acc:A0A178VZQ9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.