Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0036g01460.t01 | Wine grape | nucleus | 63.92 | 48.82 |
| KXG38419 | Sorghum | nucleus | 59.84 | 45.52 |
| Zm00001d032801_P005 | Maize | nucleus | 59.57 | 45.28 |
| HORVU1Hr1G038370.1 | Barley | nucleus | 58.51 | 44.35 |
| TraesCS1D01G143000.1 | Wheat | nucleus | 58.42 | 44.14 |
| TraesCS1A01G144000.3 | Wheat | nucleus | 58.24 | 43.83 |
| AT1G08600.3 | Thale cress | nucleus | 56.83 | 43.34 |
| CDX95047 | Canola | nucleus | 56.74 | 43.24 |
| CDX93550 | Canola | nucleus | 56.83 | 42.93 |
| TraesCS1B01G161400.5 | Wheat | nucleus | 58.33 | 41.46 |
| Solyc04g050160.2.1 | Tomato | nucleus | 10.2 | 36.51 |
| Bra018612.1-P | Field mustard | nucleus | 56.83 | 24.74 |
| GSMUA_Achr5P24600_001 | Banana | nucleus | 15.34 | 18.52 |
| GSMUA_Achr7P00330_001 | Banana | plastid | 14.18 | 18.41 |
| Os07t0692600-01 | Rice | mitochondrion | 7.09 | 16.84 |
| GSMUA_Achr7P06840_001 | Banana | nucleus | 11.7 | 14.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 13.65 | 13.91 |
| GSMUA_Achr6P04530_001 | Banana | nucleus | 9.31 | 11.84 |
| GSMUA_Achr8P01860_001 | Banana | nucleus | 11.08 | 11.57 |
| GSMUA_Achr7P23270_001 | Banana | nucleus | 13.21 | 10.46 |
| GSMUA_Achr4P27500_001 | Banana | mitochondrion | 16.22 | 8.92 |
| Os02t0161200-01 | Rice | nucleus | 2.04 | 5.4 |
| Os07t0692500-01 | Rice | cytosol | 2.3 | 4.57 |
| GSMUA_Achr4P25070_001 | Banana | golgi | 0.71 | 3.16 |
| Os07t0692401-00 | Rice | mitochondrion | 0.27 | 0.62 |
| KRH77275 | Soybean | cytosol | 0.0 | 0.0 |
| KRH28211 | Soybean | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| MapMan:12.4.1.3.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | InterPro:ADD | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSMUA_Achr4G25080_001 | EnsemblPlants:GSMUA_Achr4P25080_001 | EnsemblPlants:GSMUA_Achr4T25080_001 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR025766 | InterPro:IPR038718 |
| UniProt:M0SRW9 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51533 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF843 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf |
| InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI00029584B9 | SEG:seg | : | : |
Description
SNF2 family N-terminal domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G25080_001]
Coordinates
chr4:-:24690725..24713279
Molecular Weight (calculated)
129483.0 Da
IEP (calculated)
6.515
GRAVY (calculated)
-0.530
Length
1128 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKVLVEEWED VLDNLETQSA LLLEQLDGAG IELPSLYKWI ESQVPGGCRT EAWKTRAHWV GSVATSELNQ SVKDAEQYLQ SCHPVRRKHG RLLESGSSGY
0101: LAKNLSVKDG DNLIENSEKD WQIFDEIIHS GRFSDSNSFG SNNWAAVYMA STPQQAANLG LHLPGVNEVE EIGEIEENPF YDEATQNEKE IGLSEEQKRN
0201: YRKVREEDDV KITKKLQCRL KQRRKRKRKY QELVENDVLD GVAQLNESQL IFRDPSSSGA DVDHPVAVAE DLKPEIPNKP KNEIPIQNDT IKRSCESEDV
0301: ELDNKRHRTV IIESDDEVQV IDDKSPSHDL IRDQCLTAQV REVVDVIDSD VLSSPTPANN DSLMDIPEKF HCTACSEVLK ASEVQRHPTL EVIVCTKCNL
0401: LIEEKMRIED PDLGVYCRWC GKCDDLIRCK SCKMLFCAMC IARNFGETRF LDVETNGWDC CCCSPVLLHQ FISECEKALK GFMVSSSESE SELSDGQMVV
0501: RLGHKKRRKK RIRRIIDDTE LGEETRRKIA MEKARQEHLK SMQAQSVGKF CNTRSNESVG EVSLDDAIEG YIVNIAREKD EEPVRIPQSI SAKLKPHQIA
0601: GIRFMWENII QSVKKVKSGD IGLGCILAHT MGLGKTFQVI AFLYTAMRKI DLGLRTALIV TPVNVLHNWR QEFVKWRPTE LKSLRVFMLE DVARERRADL
0701: LSKWRVKGGI FLIGYAAFRN LSLGRHVKDR STASEICHAL HYVPDILVCD EAHMIKNTRA DITQALKQVK TQRRIALTGS PLQNNLMEYY CMVDFVREGY
0801: LGSSHEFRNR FQNPIENGQH TNSTIDDVRI MNQRSHILYE QLKGFVQRMD MNVVKKDLPP KTVFVITVKL SPLQRKLYRK FLDVHGFTGD KISSERTIRP
0901: RCFFANYQAL AQVWNHPGLL QVAKEHRDYL RQEDAVENFL VEDGSSDDNM ENDFSNGEKQ KAKDDIFYKR NDGVFYHQET DWWTDLLGEK IYQEVDYSGK
1001: MVLLLDILTM SSEVGDKVLV FSQSLTTLDL IEMFLSKLPR KESEGKFWKQ GKDWYRLDGS TQSSERQKLV ERFNEPTNKR VKCTLISTRA GSLGINLYAA
1101: NRVIVVDGSW NPTYDLQAIY RVWRHDYN
0101: LAKNLSVKDG DNLIENSEKD WQIFDEIIHS GRFSDSNSFG SNNWAAVYMA STPQQAANLG LHLPGVNEVE EIGEIEENPF YDEATQNEKE IGLSEEQKRN
0201: YRKVREEDDV KITKKLQCRL KQRRKRKRKY QELVENDVLD GVAQLNESQL IFRDPSSSGA DVDHPVAVAE DLKPEIPNKP KNEIPIQNDT IKRSCESEDV
0301: ELDNKRHRTV IIESDDEVQV IDDKSPSHDL IRDQCLTAQV REVVDVIDSD VLSSPTPANN DSLMDIPEKF HCTACSEVLK ASEVQRHPTL EVIVCTKCNL
0401: LIEEKMRIED PDLGVYCRWC GKCDDLIRCK SCKMLFCAMC IARNFGETRF LDVETNGWDC CCCSPVLLHQ FISECEKALK GFMVSSSESE SELSDGQMVV
0501: RLGHKKRRKK RIRRIIDDTE LGEETRRKIA MEKARQEHLK SMQAQSVGKF CNTRSNESVG EVSLDDAIEG YIVNIAREKD EEPVRIPQSI SAKLKPHQIA
0601: GIRFMWENII QSVKKVKSGD IGLGCILAHT MGLGKTFQVI AFLYTAMRKI DLGLRTALIV TPVNVLHNWR QEFVKWRPTE LKSLRVFMLE DVARERRADL
0701: LSKWRVKGGI FLIGYAAFRN LSLGRHVKDR STASEICHAL HYVPDILVCD EAHMIKNTRA DITQALKQVK TQRRIALTGS PLQNNLMEYY CMVDFVREGY
0801: LGSSHEFRNR FQNPIENGQH TNSTIDDVRI MNQRSHILYE QLKGFVQRMD MNVVKKDLPP KTVFVITVKL SPLQRKLYRK FLDVHGFTGD KISSERTIRP
0901: RCFFANYQAL AQVWNHPGLL QVAKEHRDYL RQEDAVENFL VEDGSSDDNM ENDFSNGEKQ KAKDDIFYKR NDGVFYHQET DWWTDLLGEK IYQEVDYSGK
1001: MVLLLDILTM SSEVGDKVLV FSQSLTTLDL IEMFLSKLPR KESEGKFWKQ GKDWYRLDGS TQSSERQKLV ERFNEPTNKR VKCTLISTRA GSLGINLYAA
1101: NRVIVVDGSW NPTYDLQAIY RVWRHDYN
0001: MEANEESLKG KIEKLEGKEV IVESKEDEMD IIIEENREAE QEVMEVKARD GRGEQNDVLM EENNNQGEQK DEEMQDASSR SESSDFNSDE DEQILSRRDD
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRE RRFDLLTKWR KKGGVFLMGY TNFRNLSLGR GVKDLNAARG ICNALRDGPD ILVCDEAHII KNTKADTTQA LKQVKCQRRI
0901: ALTGSPLQNN LMEYYCMVDF VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEQLKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR
1001: ILYQRFLELY GFSDGRTDER MRKNFFAAYQ VLAQILNHPG IPQLRSEDSK NGRRGSIVDI PDDCSSDENI DYNMVTGEKQ RTMNDLQDKV DGYLQKDWWV
1101: DLLQKNNYKV SDFSGKMILL LDILSMSADV GDKALVFSQS IPTLDLIELY LSRVPRHGKQ GKFWKKGKDW YRIDGKTESS ERQKLVDRFN EPDNKRVKCT
1201: LISTRAGSLG INLYAANRVI IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVTKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD
1301: DEKSEAVTEI SKQNEAGHSN LVEQAILWTK KATLSRVGGD KLMENLLQRH GPNWISSFHE HETLLQENEE ERLTKEEKDM AWEVYRRALE WEEVQRVPFS
1401: ESPVVPKPSP STQTEPLPQP KGFNRSRFVN RNCTRIAHQL TLISQGLKVG SSTVCGECGR VIRWEDVIPA SKLSAVIVN
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRE RRFDLLTKWR KKGGVFLMGY TNFRNLSLGR GVKDLNAARG ICNALRDGPD ILVCDEAHII KNTKADTTQA LKQVKCQRRI
0901: ALTGSPLQNN LMEYYCMVDF VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEQLKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR
1001: ILYQRFLELY GFSDGRTDER MRKNFFAAYQ VLAQILNHPG IPQLRSEDSK NGRRGSIVDI PDDCSSDENI DYNMVTGEKQ RTMNDLQDKV DGYLQKDWWV
1101: DLLQKNNYKV SDFSGKMILL LDILSMSADV GDKALVFSQS IPTLDLIELY LSRVPRHGKQ GKFWKKGKDW YRIDGKTESS ERQKLVDRFN EPDNKRVKCT
1201: LISTRAGSLG INLYAANRVI IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVTKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD
1301: DEKSEAVTEI SKQNEAGHSN LVEQAILWTK KATLSRVGGD KLMENLLQRH GPNWISSFHE HETLLQENEE ERLTKEEKDM AWEVYRRALE WEEVQRVPFS
1401: ESPVVPKPSP STQTEPLPQP KGFNRSRFVN RNCTRIAHQL TLISQGLKVG SSTVCGECGR VIRWEDVIPA SKLSAVIVN
Arabidopsis Description
ATRXCHR20 [Source:UniProtKB/TrEMBL;Acc:A0A178VZQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.