Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G143000.1 | Wheat | nucleus | 96.93 | 97.32 |
| HORVU1Hr1G038370.1 | Barley | nucleus | 92.13 | 92.81 |
| TraesCS1B01G161400.5 | Wheat | nucleus | 96.93 | 91.56 |
| Os10t0457700-01 | Rice | nucleus | 69.45 | 78.92 |
| Zm00001d032801_P005 | Maize | nucleus | 75.52 | 76.28 |
| KXG38419 | Sorghum | nucleus | 75.45 | 76.26 |
| GSMUA_Achr4P25080_001 | Banana | nucleus | 43.83 | 58.24 |
| KRH34128 | Soybean | nucleus | 42.09 | 55.89 |
| VIT_14s0036g01460.t01 | Wine grape | nucleus | 55.04 | 55.86 |
| KRG92726 | Soybean | nucleus | 53.17 | 53.67 |
| Solyc04g050150.2.1 | Tomato | nucleus | 43.56 | 53.66 |
| GSMUA_Achr4P25070_001 | Banana | golgi | 8.94 | 52.96 |
| AT1G08600.3 | Thale cress | nucleus | 50.17 | 50.85 |
| Solyc04g050160.2.1 | Tomato | nucleus | 10.01 | 47.62 |
| CDY22674 | Canola | nucleus | 24.15 | 47.01 |
| Bra018612.1-P | Field mustard | nucleus | 49.7 | 28.75 |
| TraesCS3A01G015600.1 | Wheat | endoplasmic reticulum, golgi | 10.81 | 26.82 |
| TraesCS2A01G185300.1 | Wheat | plastid | 12.54 | 21.68 |
| TraesCS6A01G321200.1 | Wheat | nucleus | 14.01 | 21.58 |
| TraesCS3A01G081900.1 | Wheat | nucleus | 15.08 | 18.31 |
| TraesCS5A01G340400.1 | Wheat | nucleus | 11.54 | 18.06 |
| TraesCS2A01G561600.1 | Wheat | mitochondrion | 12.61 | 17.68 |
| TraesCS2A01G140400.2 | Wheat | cytosol | 10.87 | 17.05 |
| TraesCS2A01G182200.1 | Wheat | plastid | 10.87 | 15.69 |
| TraesCS4A01G022800.1 | Wheat | mitochondrion, plastid | 10.41 | 15.66 |
| TraesCS3A01G220700.1 | Wheat | nucleus | 10.94 | 15.53 |
| TraesCS3A01G238800.1 | Wheat | nucleus | 10.81 | 15.33 |
| TraesCS6A01G241100.1 | Wheat | nucleus | 10.54 | 13.87 |
| TraesCS2A01G089500.1 | Wheat | plastid | 11.07 | 13.16 |
| TraesCS1A01G245700.1 | Wheat | mitochondrion, nucleus | 12.54 | 12.63 |
| TraesCS1A01G442400.2 | Wheat | mitochondrion | 14.41 | 10.44 |
| KRH77275 | Soybean | cytosol | 0.2 | 3.26 |
| KRH28211 | Soybean | mitochondrion | 0.2 | 3.26 |
Protein Annotations
| MapMan:12.4.1.3.2 | Gene3D:3.40.50.10810 | InterPro:ADD | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR025766 | InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51533 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF843 | SMART:SM00487 | SMART:SM00490 |
| InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS1A01G144000 | EnsemblPlants:TraesCS1A01G144000.3 | TIGR:cd00046 |
| TIGR:cd00079 | TIGR:cd11726 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1A:+:249043666..249056801
Molecular Weight (calculated)
169762.0 Da
IEP (calculated)
5.658
GRAVY (calculated)
-0.630
Length
1499 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDVNGKLSDG DLNKTEALHS NGQPVDDVII IESEGDENKV VVETNIIEGP FEEHKEHRCG KTDNSVHEEA STSTDDDSDS DLYGFLRESE NEQTSESDVE
0101: ETDIEVALPE EKVEELVAEF HDVESKAAEA QESLEKESLE KIEAEVRLEL SERLQGDALD LAVAIEMEQF KKEWSTELDD LEIRSAVLLE ELDAAGVELP
0201: SLYKSIESQA PNVCETEAWK NRTHWAGSQV PEQANLSIRK ADEYLQSCRP VRRKHGRLLE EGASGFLAGK VPLVDDDSVQ CHEKSWSSFN ELIKSIKCAK
0301: TSFGSSNWAS VYLANTPQEA AALGLQFPGV DEVEEIAEVD GAVDDIKCVD EIELSEEQRR KYRKVREEDD AKAIKRLRRY MEKRTDGWCK VPAHGNVGLT
0401: SSSNGCCKLP LSLDDGVLDA NRGRPLSEKQ KMDKDEVSAE LLKRTREDDV ELDHKRSKTI VIESDDDMQM DSKLVLHIKD SEHSSAELEK GVDIIDLDLF
0501: PSQSPKFSDM DLPKSFKCTI CTKMLNASDV HRHPVLDVAV CGSCRFLVIE KNRLEGPVSG GYCTWCVQCE QLLSCSSCKM LFCTKCLLKN LGEKCISEAK
0601: VTGWQCCCCQ PSQLEHLVSE CDKALSGVES SDLEGDNTSG TETNDPVSKH KRKKKIRRIM DDTELGEETK RKIAMEKARQ EHLKSMHEQS ASKLRSSNIG
0701: TSSGAVLEVF LQDAGDGHIV NPAREEDEEP VRIPSSISAK LKPHQVAGII FMWENVIQSV RTVKSGDKGF GCILAHNMGL GKTFQVITFL YVVMRCAQLG
0801: LRTALIVTPV NVLHNWKKEF TKWQPAELKP LRVYMLEDVP RLKRLYLLNK WRAKGGVLLI GYSSFRNLSL GRHVKEKDTA DEISNALQCG PDILVCDEAH
0901: MIKNRKADTT HALKQVKTQR RIALTGSPLQ NNLMEYYCMV DFVREGFLGS SHEFRNRFQN PIENGQHTNS TSDDVKIMNQ RSHILYEQLK GFVQRMDMNV
1001: VKNDLPPKKV FVITVKLSQL QRKLYRRFLD VHGFSSGTSE KPYQHGGFFA KYQKLAQIWN HPGLLQMAKE QRGSLRREDA VENFLTDESS SDDNHSIEIQ
1101: LPNGGKQKSR TDQQSKKIDL LNEESNWWEN LLDDNTFKEA DYSGKMVLLL DILATCYELG DKALVFSQNL TTLDLVEFYL SKMQIKGKEG KYWKQGKDWY
1201: RLDGSTPSSE RQNLVERFND PANTRVKCTL ISTRAGSLGI NLHAANRVVL LDGSWNPTHD LQAIYRVWRY GQMKPVYAYR LMAHGTMEEK IYKRQVTKEG
1301: LAARVVDRQQ VSRTISKEEM LHLFEFGDEE LLDESGNDTI IDRTKVGMEK LSMPNSTELP VDTLMLNLLS DHPRWIAGYH EHEVLLQENE EERLTKEEQD
1401: MAWSNFKQSQ QLDAVARKAA HDHERKPIES KPPPPKVTSR SRQAQQPKSH SNNQKKCTNL NHMLTLRSHG TKAGCTTSCD ECGQTISWET LNRSDGRLR
0101: ETDIEVALPE EKVEELVAEF HDVESKAAEA QESLEKESLE KIEAEVRLEL SERLQGDALD LAVAIEMEQF KKEWSTELDD LEIRSAVLLE ELDAAGVELP
0201: SLYKSIESQA PNVCETEAWK NRTHWAGSQV PEQANLSIRK ADEYLQSCRP VRRKHGRLLE EGASGFLAGK VPLVDDDSVQ CHEKSWSSFN ELIKSIKCAK
0301: TSFGSSNWAS VYLANTPQEA AALGLQFPGV DEVEEIAEVD GAVDDIKCVD EIELSEEQRR KYRKVREEDD AKAIKRLRRY MEKRTDGWCK VPAHGNVGLT
0401: SSSNGCCKLP LSLDDGVLDA NRGRPLSEKQ KMDKDEVSAE LLKRTREDDV ELDHKRSKTI VIESDDDMQM DSKLVLHIKD SEHSSAELEK GVDIIDLDLF
0501: PSQSPKFSDM DLPKSFKCTI CTKMLNASDV HRHPVLDVAV CGSCRFLVIE KNRLEGPVSG GYCTWCVQCE QLLSCSSCKM LFCTKCLLKN LGEKCISEAK
0601: VTGWQCCCCQ PSQLEHLVSE CDKALSGVES SDLEGDNTSG TETNDPVSKH KRKKKIRRIM DDTELGEETK RKIAMEKARQ EHLKSMHEQS ASKLRSSNIG
0701: TSSGAVLEVF LQDAGDGHIV NPAREEDEEP VRIPSSISAK LKPHQVAGII FMWENVIQSV RTVKSGDKGF GCILAHNMGL GKTFQVITFL YVVMRCAQLG
0801: LRTALIVTPV NVLHNWKKEF TKWQPAELKP LRVYMLEDVP RLKRLYLLNK WRAKGGVLLI GYSSFRNLSL GRHVKEKDTA DEISNALQCG PDILVCDEAH
0901: MIKNRKADTT HALKQVKTQR RIALTGSPLQ NNLMEYYCMV DFVREGFLGS SHEFRNRFQN PIENGQHTNS TSDDVKIMNQ RSHILYEQLK GFVQRMDMNV
1001: VKNDLPPKKV FVITVKLSQL QRKLYRRFLD VHGFSSGTSE KPYQHGGFFA KYQKLAQIWN HPGLLQMAKE QRGSLRREDA VENFLTDESS SDDNHSIEIQ
1101: LPNGGKQKSR TDQQSKKIDL LNEESNWWEN LLDDNTFKEA DYSGKMVLLL DILATCYELG DKALVFSQNL TTLDLVEFYL SKMQIKGKEG KYWKQGKDWY
1201: RLDGSTPSSE RQNLVERFND PANTRVKCTL ISTRAGSLGI NLHAANRVVL LDGSWNPTHD LQAIYRVWRY GQMKPVYAYR LMAHGTMEEK IYKRQVTKEG
1301: LAARVVDRQQ VSRTISKEEM LHLFEFGDEE LLDESGNDTI IDRTKVGMEK LSMPNSTELP VDTLMLNLLS DHPRWIAGYH EHEVLLQENE EERLTKEEQD
1401: MAWSNFKQSQ QLDAVARKAA HDHERKPIES KPPPPKVTSR SRQAQQPKSH SNNQKKCTNL NHMLTLRSHG TKAGCTTSCD ECGQTISWET LNRSDGRLR
0001: MEANEESLKG KIEKLEGKEV IVESKEDEMD IIIEENREAE QEVMEVKARD GRGEQNDVLM EENNNQGEQK DEEMQDASSR SESSDFNSDE DEQILSRRDD
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRY KFFYERNFWG VKDLNAARGI CNALRDGPDI LVCDEAHIIK NTKADTTQAL KQVKCQRRIA LTGSPLQNNL MEYYCMVDFV
0901: REGFLGSSPE FRNRFQNPIE NGQHMNSTAE DVKIMNQRSH ILYEQLKGFV QRMDMNVVKK DLPPKTVFVI SVKLSPLQRI LYQRFLELYG FSDGRTDERM
1001: RKNFFAAYQV LAQILNHPGI PQLRSEDSKN GRRGSIVDIP DDCSSDENID YNMVTGEKQR TMNDLQDKVD GYLQKDWWVD LLQKNNYKVS DFSGKMILLL
1101: DILSMSADVG DKALVFSQSI PTLDLIELYL SRVPRHGKQG KFWKKGKDWY RIDGKTESSE RQKLVDRFNE PDNKRVKCTL ISTRAGSLGI NLYAANRVII
1201: VDGSWNPTYD LQAIFRAWRY GQKKPVFAYR LMARGTIEEK IYKRQVTKEG LAARVVDRQQ VHRTISKEEM LHLFEFDDDD EKSEAVTEIS KQNEAGHSNL
1301: VEQAILWTKK ATLSRVGGDK LMENLLQRHG PNWISSFHEH ETLLQENEEE RLTKEEKDMA WEVYRRALEW EEVQRVPFSE SPVVPKPSPS TQTEPLPQPK
1401: GFNRSRFVNR NCTRIAHQLT LISQGLKVGS STVCGECGRV IRWEDVIPAS KLSAVIVN
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRY KFFYERNFWG VKDLNAARGI CNALRDGPDI LVCDEAHIIK NTKADTTQAL KQVKCQRRIA LTGSPLQNNL MEYYCMVDFV
0901: REGFLGSSPE FRNRFQNPIE NGQHMNSTAE DVKIMNQRSH ILYEQLKGFV QRMDMNVVKK DLPPKTVFVI SVKLSPLQRI LYQRFLELYG FSDGRTDERM
1001: RKNFFAAYQV LAQILNHPGI PQLRSEDSKN GRRGSIVDIP DDCSSDENID YNMVTGEKQR TMNDLQDKVD GYLQKDWWVD LLQKNNYKVS DFSGKMILLL
1101: DILSMSADVG DKALVFSQSI PTLDLIELYL SRVPRHGKQG KFWKKGKDWY RIDGKTESSE RQKLVDRFNE PDNKRVKCTL ISTRAGSLGI NLYAANRVII
1201: VDGSWNPTYD LQAIFRAWRY GQKKPVFAYR LMARGTIEEK IYKRQVTKEG LAARVVDRQQ VHRTISKEEM LHLFEFDDDD EKSEAVTEIS KQNEAGHSNL
1301: VEQAILWTKK ATLSRVGGDK LMENLLQRHG PNWISSFHEH ETLLQENEEE RLTKEEKDMA WEVYRRALEW EEVQRVPFSE SPVVPKPSPS TQTEPLPQPK
1401: GFNRSRFVNR NCTRIAHQLT LISQGLKVGS STVCGECGRV IRWEDVIPAS KLSAVIVN
Arabidopsis Description
ATRXCHR20 [Source:UniProtKB/TrEMBL;Acc:A0A178VZQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.