Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS7A01G384800.1 | |
| TraesCS7B01G287700.1 | |
| TraesCS7D01G381300.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G078680.2 | Barley | nucleus | 97.02 | 96.62 |
| TraesCS6B01G351900.1 | Wheat | nucleus | 97.53 | 94.62 |
| TraesCS6D01G300900.1 | Wheat | cytosol | 98.87 | 90.84 |
| EES07568 | Sorghum | nucleus | 84.28 | 84.54 |
| HORVU1Hr1G071540.2 | Barley | nucleus | 23.33 | 83.15 |
| Zm00001d018151_P003 | Maize | nucleus | 82.53 | 82.95 |
| HORVU7Hr1G119270.3 | Barley | nucleus | 23.84 | 82.86 |
| Os02t0762800-00 | Rice | nucleus | 83.14 | 82.55 |
| GSMUA_Achr5P24600_001 | Banana | nucleus | 65.47 | 68.2 |
| KRH77966 | Soybean | nucleus | 61.15 | 66.11 |
| AT3G19210.1 | Thale cress | nucleus | 60.64 | 64.84 |
| CDX92308 | Canola | nucleus | 60.64 | 64.76 |
| Bra022395.1-P | Field mustard | nucleus | 60.64 | 64.62 |
| CDX99258 | Canola | nucleus | 60.12 | 64.5 |
| Solyc04g056400.2.1 | Tomato | cytosol, nucleus, plastid | 24.25 | 63.96 |
| Solyc04g056410.2.1 | Tomato | nucleus | 37.92 | 62.86 |
| VIT_03s0063g00580.t01 | Wine grape | nucleus | 59.81 | 59.51 |
| TraesCS3A01G015600.1 | Wheat | endoplasmic reticulum, golgi | 16.34 | 26.32 |
| TraesCS2A01G185300.1 | Wheat | plastid | 18.91 | 21.22 |
| TraesCS2A01G561600.1 | Wheat | mitochondrion | 18.81 | 17.12 |
| TraesCS3A01G081900.1 | Wheat | nucleus | 20.35 | 16.05 |
| TraesCS1A01G144000.3 | Wheat | nucleus | 21.58 | 14.01 |
| TraesCS5A01G340400.1 | Wheat | nucleus | 12.95 | 13.15 |
| TraesCS2A01G140400.2 | Wheat | cytosol | 12.02 | 12.24 |
| TraesCS4A01G022800.1 | Wheat | mitochondrion, plastid | 12.23 | 11.95 |
| TraesCS3A01G220700.1 | Wheat | nucleus | 12.74 | 11.74 |
| TraesCS2A01G182200.1 | Wheat | plastid | 12.33 | 11.55 |
| TraesCS3A01G238800.1 | Wheat | nucleus | 12.44 | 11.45 |
| TraesCS6A01G241100.1 | Wheat | nucleus | 13.16 | 11.24 |
| TraesCS2A01G089500.1 | Wheat | plastid | 12.85 | 9.91 |
| TraesCS1A01G245700.1 | Wheat | mitochondrion, nucleus | 13.98 | 9.13 |
| TraesCS1A01G442400.2 | Wheat | mitochondrion | 19.01 | 8.94 |
Protein Annotations
| Gene3D:1.20.120.850 | MapMan:12.4.1.3.1 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR10799 | PANTHER:PTHR10799:SF889 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N |
| SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS6A01G321200 | EnsemblPlants:TraesCS6A01G321200.1 | TIGR:cd00046 | TIGR:cd00079 | SEG:seg |
Description
No Description!
Coordinates
chr6A:+:555723204..555732132
Molecular Weight (calculated)
108204.0 Da
IEP (calculated)
6.258
GRAVY (calculated)
-0.542
Length
973 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSRSKRDRR GSDSEEEEEE EVVTLSSDPD ESESEAERGA EAADDDDDEY VADSSDAGGV EDEAEEGGDS DDGGGDGGRP VRGGRRGAAE PDEERKSQNV
101: DALVRGNLVV RRQPLIPRIL SVSDAAAIAR KPFKPPCGNG YSENSELLAR RLSARKRFVP WGSAQPFAVP NNLQQLPTIA SVDSSEKEEP LPPGIEPLIL
201: WQPEECDKEN NNFTAIEVDH LLVRYLRPHQ REGVQFMFDC VSGLLSDDGI AGCILADDMG LGKTLQSITL LYTLLAQGFE GKPMVKRAVI VTPTSLVSNW
301: ESEISKWLKG KVHLLALCES TRADVLSGIG SFLKPLSHLQ VLIVSYETFR MHSSKFEIPG SCDLLICDEA HRLKNDQTLT NKALASLPCT RRILLSGTPM
401: QNDLEEFFSM VNFTNPGVLG DAAYFRRYYE APIIRGREPT ATAEEKKLGS ERSGQLSAKV NQFILRRTNA LLSNHLPPKI VEVVCCKLTP LQMTLYNHFI
501: HSKNVKRLIS EEAKSSKVLA YITALKKLCN HPKLIYDTIK SSKSGGSGFD DCLRFFPPEL FQGRSGSWTG GGGMWVELSG KMHVLARLLG HLRLKTDDRI
601: VLVSNYTQTL DLFAQLCRER RYPYVRLDGS TSINKRQKLV NQFNDLSRDE FAFLLSSKAG GCGLNLVGGN RLVLFDPDWN PANDKQAAAR VWRDGQKKRV
701: YIYRFLSTGT IEEKVYQRQM AKEGLQRVIQ QEQADDKMQD QGNSLSTEDL RDLFTLHDQV RSEIHENLKC DRCNKDHCMP LDGNGLDLDA AKHDTVSTSK
801: EKLYTDIGGF REISGCVQKM NCSNQQIEQP SEEDLRSWGH HSDPSTVPDT ILQCSAGDEV SFVFTNQVDG KLVPVESMVR STAHQPNGVT ANGEKEAVKI
901: NSPRKPGRQS LLGKNLKMMG FNLKNSSLRS PTESKRTSPV CLQPLKKTNP SSDHQPQTKR LHVASDISDD DFV
101: DALVRGNLVV RRQPLIPRIL SVSDAAAIAR KPFKPPCGNG YSENSELLAR RLSARKRFVP WGSAQPFAVP NNLQQLPTIA SVDSSEKEEP LPPGIEPLIL
201: WQPEECDKEN NNFTAIEVDH LLVRYLRPHQ REGVQFMFDC VSGLLSDDGI AGCILADDMG LGKTLQSITL LYTLLAQGFE GKPMVKRAVI VTPTSLVSNW
301: ESEISKWLKG KVHLLALCES TRADVLSGIG SFLKPLSHLQ VLIVSYETFR MHSSKFEIPG SCDLLICDEA HRLKNDQTLT NKALASLPCT RRILLSGTPM
401: QNDLEEFFSM VNFTNPGVLG DAAYFRRYYE APIIRGREPT ATAEEKKLGS ERSGQLSAKV NQFILRRTNA LLSNHLPPKI VEVVCCKLTP LQMTLYNHFI
501: HSKNVKRLIS EEAKSSKVLA YITALKKLCN HPKLIYDTIK SSKSGGSGFD DCLRFFPPEL FQGRSGSWTG GGGMWVELSG KMHVLARLLG HLRLKTDDRI
601: VLVSNYTQTL DLFAQLCRER RYPYVRLDGS TSINKRQKLV NQFNDLSRDE FAFLLSSKAG GCGLNLVGGN RLVLFDPDWN PANDKQAAAR VWRDGQKKRV
701: YIYRFLSTGT IEEKVYQRQM AKEGLQRVIQ QEQADDKMQD QGNSLSTEDL RDLFTLHDQV RSEIHENLKC DRCNKDHCMP LDGNGLDLDA AKHDTVSTSK
801: EKLYTDIGGF REISGCVQKM NCSNQQIEQP SEEDLRSWGH HSDPSTVPDT ILQCSAGDEV SFVFTNQVDG KLVPVESMVR STAHQPNGVT ANGEKEAVKI
901: NSPRKPGRQS LLGKNLKMMG FNLKNSSLRS PTESKRTSPV CLQPLKKTNP SSDHQPQTKR LHVASDISDD DFV
001: MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV
Arabidopsis Description
CHR25Protein CHROMATIN REMODELING 25 [Source:UniProtKB/Swiss-Prot;Acc:Q0PCS3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.